FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5209, 527 aa
  1>>>pF1KB5209 527 - 527 aa - 527 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7034+/-0.000906; mu= 16.9789+/- 0.055
 mean_var=80.6750+/-16.241, 0's: 0 Z-trim(106.9): 25  B-trim: 5 in 1/50
 Lambda= 0.142792
 statistics sampled from 9231 (9239) to 9231 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.648), E-opt: 0.2 (0.284), width:  16
 Scan time:  3.370

The best scores are:                                      opt bits E(32554)
CCDS7311.1 PSAP gene_id:5660|Hs108|chr10           ( 524) 3570 745.3 3.9e-215
CCDS47009.1 PSAPL1 gene_id:768239|Hs108|chr4       ( 521)  891 193.4 5.3e-49


>>CCDS7311.1 PSAP gene_id:5660|Hs108|chr10                (524 aa)
 initn: 1941 init1: 1828 opt: 3570  Z-score: 3975.8  bits: 745.3 E(32554): 3.9e-215
Smith-Waterman score: 3570; 99.4% identity (99.4% similar) in 527 aa overlap (1-527:1-524)

               10        20        30        40        50        60
pF1KB5 MYALFLLASLLGAALAGPVLGLKECTRGSAVWCQNVKTASDCGAVKHCLQTVWNKPTVKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 MYALFLLASLLGAALAGPVLGLKECTRGSAVWCQNVKTASDCGAVKHCLQTVWNKPTVKS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 LPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILDI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 IKGEMSRPGEVCSALNLCESLQKHLAELNHQKQLESNKIPELDMTEVVAPFMANIPLLLY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 IKGEMSRPGEVCSALNLCESLQKHLAELNHQKQLESNKIPELDMTEVVAPFMANIPLLLY
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 PQDGPRSKPQPKDNGDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 PQDGPRSKPQPKDNGDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMADI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 CKNYISQYSEIAIQMMMHMQDQQPKEICALVGFCDEVKEMPMQTLVPAKVASKNVIPALE
       ::::::::::::::::::::   :::::::::::::::::::::::::::::::::::::
CCDS73 CKNYISQYSEIAIQMMMHMQ---PKEICALVGFCDEVKEMPMQTLVPAKVASKNVIPALE
              250       260          270       280       290       

              310       320       330       340       350       360
pF1KB5 LVEPIKKHEVPAKSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEEC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LVEPIKKHEVPAKSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSEEC
       300       310       320       330       340       350       

              370       380       390       400       410       420
pF1KB5 QEVVDTYGSSILSILLEEVSPELVCSMLHLCSGTRLPALTVHVTQPKDGGFCEVCKKLVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 QEVVDTYGSSILSILLEEVSPELVCSMLHLCSGTRLPALTVHVTQPKDGGFCEVCKKLVG
       360       370       380       390       400       410       

              430       440       450       460       470       480
pF1KB5 YLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVEVMDPSFVCL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 YLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEILVEVMDPSFVCL
       420       430       440       450       460       470       

              490       500       510       520       
pF1KB5 KIGACPSAHKPLLGTEKCIWGPSYWCQNTETAAQCNAVEHCKRHVWN
       :::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 KIGACPSAHKPLLGTEKCIWGPSYWCQNTETAAQCNAVEHCKRHVWN
       480       490       500       510       520    

>>CCDS47009.1 PSAPL1 gene_id:768239|Hs108|chr4            (521 aa)
 initn: 1354 init1: 501 opt: 891  Z-score: 993.2  bits: 193.4 E(32554): 5.3e-49
Smith-Waterman score: 1563; 44.1% identity (73.1% similar) in 535 aa overlap (3-526:4-510)

                10        20        30        40        50         
pF1KB5  MYALFLLASLLGAALAGPVLGLKECTRGSAVWCQNVKTASDCGAVKHCLQTVWNKPTVK
          ::.:: :::::. :.:. : .::..::.::::...::. :::: .:  .::::::.:
CCDS47 MLCALLLLPSLLGATRASPTSGPQECAKGSTVWCQDLQTAARCGAVGYCQGAVWNKPTAK
               10        20        30        40        50        60

      60        70        80        90       100       110         
pF1KB5 SLPCDICKDVVTAAGDMLKDNATEEEILVYLEKTCDWLPKPNMSASCKEIVDSYLPVILD
       :::::.:.:...:::. :. .::: .::. . :::.:::. . ::.:: .::..  .::.
CCDS47 SLPCDVCQDIAAAAGNGLNPDATESDILALVMKTCEWLPSQESSAGCKWMVDAHSSAILS
               70        80        90       100       110       120

     120        130       140       150       160       170        
pF1KB5 IIKGEM-SRPGEVCSALNLCESLQKHLAELNHQKQLESNKIPELDMTEVVAPFMANIPLL
       ...:   : :..::.::.::: ::.::: :          . . :  :.::::::: :: 
CCDS47 MLRGAPDSAPAQVCTALSLCEPLQRHLATLR--------PLSKEDTFEAVAPFMANGPLT
              130       140       150               160       170  

      180       190       200       210       220       230        
pF1KB5 LYPQDGPRSKPQPKDNGDVCQDCIQMVTDIQTAVRTNSTFVQALVEHVKEECDRLGPGMA
       ..:...:.        : .::::...:. .: :::.: :...    ...:.:. ::::.:
CCDS47 FHPRQAPE--------GALCQDCVRQVSRLQEAVRSNLTLADL---NIQEQCESLGPGLA
            180               190       200          210       220 

      240       250       260       270       280       290        
pF1KB5 DICKNYISQYSEIAIQMMMHMQDQQPKEICALVGFCDEVKEMPMQTLVPAKVASKNVIPA
        .::::. :.   : : .  .    :.:.:   :::.:.   : .    ..:.. . .:.
CCDS47 VLCKNYLFQFFVPADQALRLLP---PQELCRKGGFCEELGA-PARL---TQVVAMDGVPS
             230       240          250        260          270    

      300       310       320       330       340       350        
pF1KB5 LELVEPIKKHEVPAKSDVYCEVCEFLVKEVTKLIDNNKTEKEILDAFDKMCSKLPKSLSE
       :::  : :. :.  :. : ::::  .:... . . .:..:  :  :....:: .: :...
CCDS47 LELGLPRKQSEMQMKAGVTCEVCMNVVQKLDHWLMSNSSELMITHALERVCSVMPASITK
          280       290       300       310       320       330    

      360       370       380       390       400                  
pF1KB5 ECQEVVDTYGSSILSILLEEVSPELVCSMLHLCSGTRLPALTVH-----VTQPK-----D
       ::  .::::. :... :. ...:: ::....:: :.:  : .::     : .:.     .
CCDS47 ECIILVDTYSPSLVQ-LVAKITPEKVCKFIRLC-GNRRRARAVHDAYAIVPSPEWDAENQ
          340        350       360        370       380       390  

      410       420       430       440       450       460        
pF1KB5 GGFCEVCKKLVGYLDRNLEKNSTKQEILAALEKGCSFLPDPYQKQCDQFVAEYEPVLIEI
       :.::. ::.:.   ..:::..:::..::.:.. :::.:: ::. :: .::..::::::: 
CCDS47 GSFCNGCKRLLTVSSHNLESKSTKRDILVAFKGGCSILPLPYMIQCKHFVTQYEPVLIES
            400       410       420       430       440       450  

      470       480       490       500       510       520        
pF1KB5 LVEVMDPSFVCLKIGACPSAHKPLLGTEKCIWGPSYWCQNTETAAQCNAVEHCKRHVWN 
       : ..:::  :: :.::: . . :::::..:  :::.::.. :.:  ::::.::..:::  
CCDS47 LKDMMDPVAVCKKVGACHGPRTPLLGTDQCALGPSFWCRSQEAAKLCNAVQHCQKHVWKE
            460       470       480       490       500       510  

CCDS47 MHLHAGEHA
            520 




527 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:19:03 2016 done: Fri Nov  4 22:19:04 2016
 Total Scan time:  3.370 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]