FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5169, 437 aa
  1>>>pF1KB5169 437 - 437 aa - 437 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.5234+/-0.000994; mu= 6.7630+/- 0.060
 mean_var=348.5960+/-70.965, 0's: 0 Z-trim(115.7): 143  B-trim: 896 in 1/52
 Lambda= 0.068693
 statistics sampled from 16165 (16314) to 16165 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.782), E-opt: 0.2 (0.501), width:  16
 Scan time:  3.310

The best scores are:                                      opt bits E(32554)
CCDS12756.1 SNRNP70 gene_id:6625|Hs108|chr19       ( 437) 3063 317.1 2.1e-86
CCDS74417.1 SNRNP70 gene_id:6625|Hs108|chr19       ( 428) 2019 213.6   3e-55


>>CCDS12756.1 SNRNP70 gene_id:6625|Hs108|chr19            (437 aa)
 initn: 3063 init1: 3063 opt: 3063  Z-score: 1664.5  bits: 317.1 E(32554): 2.1e-86
Smith-Waterman score: 3063; 100.0% identity (100.0% similar) in 437 aa overlap (1-437:1-437)

               10        20        30        40        50        60
pF1KB5 MTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 ETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 GRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 GRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERE
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 RRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERAR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 RERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRS
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 ERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGG
              370       380       390       400       410       420

              430       
pF1KB5 DGYLAPENGYLMEAAPE
       :::::::::::::::::
CCDS12 DGYLAPENGYLMEAAPE
              430       

>>CCDS74417.1 SNRNP70 gene_id:6625|Hs108|chr19            (428 aa)
 initn: 1707 init1: 1707 opt: 2019  Z-score: 1105.5  bits: 213.6 E(32554): 3e-55
Smith-Waterman score: 2960; 97.9% identity (97.9% similar) in 437 aa overlap (1-437:1-428)

               10        20        30        40        50        60
pF1KB5 MTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MTQFLPPNLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 ETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ETREERMERKRREKIERRQQEVETELKMWDPHNDPNAQGDAFKTLFVARVNYDTTESKLR
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 GRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDERPGPSPLPHRDRDRDRERE
       ::::::::::::::::::::::::::::::::::::::::::         :::::::::
CCDS74 GRTVKGWRPRRLGGGLGGTRRGGADVNIRHSGRDDTSRYDER---------DRDRDRERE
              190       200       210       220                230 

              250       260       270       280       290       300
pF1KB5 RRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERAR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RRERSRERDKERERRRSRSRDRRRRSRSRDKEERRRSRERSKDKDRDRKRRSSRSRERAR
             240       250       260       270       280       290 

              310       320       330       340       350       360
pF1KB5 RERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 RERERKEELRGGGGDMAEPSEAGDAPPDDGPPGELGPDGPDGPEEKGRDRDRERRRSHRS
             300       310       320       330       340       350 

              370       380       390       400       410       420
pF1KB5 ERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ERERRRDRDRDRDRDREHKRGERGSERGRDEARGGGGGQDNGLEGLGNDSRDMYMESEGG
             360       370       380       390       400       410 

              430       
pF1KB5 DGYLAPENGYLMEAAPE
       :::::::::::::::::
CCDS74 DGYLAPENGYLMEAAPE
             420        




437 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 03:22:56 2016 done: Fri Nov  4 03:22:57 2016
 Total Scan time:  3.310 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]