FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5161, 463 aa
  1>>>pF1KB5161 463 - 463 aa - 463 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6829+/-0.00108; mu= 15.5912+/- 0.065
 mean_var=64.7146+/-13.065, 0's: 0 Z-trim(103.3): 19  B-trim: 167 in 1/47
 Lambda= 0.159431
 statistics sampled from 7337 (7343) to 7337 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.584), E-opt: 0.2 (0.226), width:  16
 Scan time:  2.880

The best scores are:                                      opt bits E(32554)
CCDS9406.1 SUCLA2 gene_id:8803|Hs108|chr13         ( 463) 2968 691.8  4e-199
CCDS43104.1 SUCLG2 gene_id:8801|Hs108|chr3         ( 432) 1357 321.2 1.3e-87
CCDS54605.1 SUCLG2 gene_id:8801|Hs108|chr3         ( 440) 1290 305.8 5.9e-83


>>CCDS9406.1 SUCLA2 gene_id:8803|Hs108|chr13              (463 aa)
 initn: 2968 init1: 2968 opt: 2968  Z-score: 3688.3  bits: 691.8 E(32554): 4e-199
Smith-Waterman score: 2968; 99.8% identity (100.0% similar) in 463 aa overlap (1-463:1-463)

               10        20        30        40        50        60
pF1KB5 MAASMFYGRLVAVATLRNHRPRTAQRAAAQVLGSSGLFNNHGLQVQQQQQRNLSLHEYMS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 MAASMFYGRLVAVATLRNHRPRTAQRAAAQVLGSSGLFNNHGLQVQQQQQRNLSLHEYMS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 MELLQEAGVSVPKGYVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 MELLQEAGVSVPKGYVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLKGGVK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERKYPRREYYFAITMERSFQGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 IVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERKYPRREYYFAITMERSFQGP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 VLIGSSHGGVNIEDVAAETPEAIIKEPIDIEEGIKKEQALQLAQKMGFPPNIVESAAENM
       ::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::
CCDS94 VLIGSSHGGVNIEDVAAESPEAIIKEPIDIEEGIKKEQALQLAQKMGFPPNIVESAAENM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 VKLYSLFLKYDATMIEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 VKLYSLFLKYDATMIEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQEDER
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 DKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 DKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQVTEA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 FKLITSDKKVLAILVNIFGGIMRCDVIAQGIVMAVKDLEIKIPVVVRLQGTRVDDAKALI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS94 FKLITSDKKVLAILVNIFGGIMRCDVIAQGIVMAVKDLEIKIPVVVRLQGTRVDDAKALI
              370       380       390       400       410       420

              430       440       450       460   
pF1KB5 ADSGLKILACDDLDEAARMVVKLSEIVTLAKQAHVDVKFQLPI
       :::::::::::::::::::::::::::::::::::::::::::
CCDS94 ADSGLKILACDDLDEAARMVVKLSEIVTLAKQAHVDVKFQLPI
              430       440       450       460   

>>CCDS43104.1 SUCLG2 gene_id:8801|Hs108|chr3              (432 aa)
 initn: 1377 init1: 1354 opt: 1357  Z-score: 1686.2  bits: 321.2 E(32554): 1.3e-87
Smith-Waterman score: 1357; 52.0% identity (78.6% similar) in 425 aa overlap (21-441:4-426)

               10        20        30           40         50      
pF1KB5 MAASMFYGRLVAVATLRNHRPRTAQRAAAQVLGSSGL---FNNHGLQ-VQQQQQRNLSLH
                           : .::  :...: . .:   :   : : ::  ..: :.:.
CCDS43                  MASPVAAQ--AGKLLRALALRPRFLAAGSQAVQLTSRRWLNLQ
                                  10        20        30        40 

         60        70        80        90       100       110      
pF1KB5 EYMSMELLQEAGVSVPKGYVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLK
       ::.: .:... :: : . .:: . .::   ::.:..:..:.:::.::::::::.:.::::
CCDS43 EYQSKKLMSDNGVRVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFNSGLK
              50        60        70        80        90       100 

        120       130       140       150       160       170      
pF1KB5 GGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERKYPRREYYFAITMERS
       :::... .:. .  ...:::: .: :::: ..:   :.:.: :     :: :.:: :.::
CCDS43 GGVHLTKDPNVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRS
             110       120       130       140       150       160 

        180       190       200       210       220       230      
pF1KB5 FQGPVLIGSSHGGVNIEDVAAETPEAIIKEPIDIEEGIKKEQALQLAQKMGFPPNIVESA
        .::::.:: .:::.::.::: .:: :.:: ::: ::::  :: ..:...::   .  .:
CCDS43 CNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIFEGIKDSQAQRMAENLGFVGPLKSQA
             170       180       190       200       210       220 

        240       250       260       270       280       290      
pF1KB5 AENMVKLYSLFLKYDATMIEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQ
       :....:::.:::: :::..:.::. :  .: :.:.:::::::.:. .::: :: ..: ..
CCDS43 ADQITKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSE
             230       240       250       260       270       280 

        300       310       320       330       340       350      
pF1KB5 EDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQ
       ..  ...::: .:.::::::::.:.:::::::::: ::: :.:: ::::::.:::.   :
CCDS43 NEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKEAQ
             290       300       310       320       330       340 

        360       370       380       390       400       410      
pF1KB5 VTEAFKLITSDKKVLAILVNIFGGIMRCDVIAQGIVMAVKDLEIKIPVVVRLQGTRVDDA
       : .::::.:.: :: ::::::::::. : .::.::. : ..::.:.:.::::.:: :..:
CCDS43 VYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTNVQEA
             350       360       370       380       390       400 

        420       430       440       450       460   
pF1KB5 KALIADSGLKILACDDLDEAARMVVKLSEIVTLAKQAHVDVKFQLPI
       . .. .::: : .  ::..::. .:                      
CCDS43 QKILNNSGLPITSAIDLEDAAKKAVASVAKK                
             410       420       430                  

>>CCDS54605.1 SUCLG2 gene_id:8801|Hs108|chr3              (440 aa)
 initn: 1287 init1: 1287 opt: 1290  Z-score: 1602.8  bits: 305.8 E(32554): 5.9e-83
Smith-Waterman score: 1290; 53.2% identity (79.0% similar) in 395 aa overlap (21-411:4-396)

               10        20        30           40         50      
pF1KB5 MAASMFYGRLVAVATLRNHRPRTAQRAAAQVLGSSGL---FNNHGLQ-VQQQQQRNLSLH
                           : .::  :...: . .:   :   : : ::  ..: :.:.
CCDS54                  MASPVAAQ--AGKLLRALALRPRFLAAGSQAVQLTSRRWLNLQ
                                  10        20        30        40 

         60        70        80        90       100       110      
pF1KB5 EYMSMELLQEAGVSVPKGYVAKSPDEAYAIAKKLGSKDVVIKAQVLAGGRGKGTFESGLK
       ::.: .:... :: : . .:: . .::   ::.:..:..:.:::.::::::::.:.::::
CCDS54 EYQSKKLMSDNGVRVQRFFVADTANEALEAAKRLNAKEIVLKAQILAGGRGKGVFNSGLK
              50        60        70        80        90       100 

        120       130       140       150       160       170      
pF1KB5 GGVKIVFSPEEAKAVSSQMIGKKLFTKQTGEKGRICNQVLVCERKYPRREYYFAITMERS
       :::... .:. .  ...:::: .: :::: ..:   :.:.: :     :: :.:: :.::
CCDS54 GGVHLTKDPNVVGQLAKQMIGYNLATKQTPKEGVKVNKVMVAEALDISRETYLAILMDRS
             110       120       130       140       150       160 

        180       190       200       210       220       230      
pF1KB5 FQGPVLIGSSHGGVNIEDVAAETPEAIIKEPIDIEEGIKKEQALQLAQKMGFPPNIVESA
        .::::.:: .:::.::.::: .:: :.:: ::: ::::  :: ..:...::   .  .:
CCDS54 CNGPVLVGSPQGGVDIEEVAASNPELIFKEQIDIFEGIKDSQAQRMAENLGFVGPLKSQA
             170       180       190       200       210       220 

        240       250       260       270       280       290      
pF1KB5 AENMVKLYSLFLKYDATMIEINPMVEDSDGAVLCMDAKINFDSNSAYRQKKIFDLQDWTQ
       :....:::.:::: :::..:.::. :  .: :.:.:::::::.:. .::: :: ..: ..
CCDS54 ADQITKLYNLFLKIDATQVEVNPFGETPEGQVVCFDAKINFDDNAEFRQKDIFAMDDKSE
             230       240       250       260       270       280 

        300       310       320       330       340       350      
pF1KB5 EDERDKDAAKANLNYIGLDGNIGCLVNGAGLAMATMDIIKLHGGTPANFLDVGGGATVHQ
       ..  ...::: .:.::::::::.:.:::::::::: ::: :.:: ::::::.:::.   :
CCDS54 NEPIENEAAKYDLKYIGLDGNIACFVNGAGLAMATCDIIFLNGGKPANFLDLGGGVKEAQ
             290       300       310       320       330       340 

        360       370       380       390       400       410      
pF1KB5 VTEAFKLITSDKKVLAILVNIFGGIMRCDVIAQGIVMAVKDLEIKIPVVVRLQGTRVDDA
       : .::::.:.: :: ::::::::::. : .::.::. : ..::.:.:.::::.::     
CCDS54 VYQAFKLLTADPKVEAILVNIFGGIVNCAIIANGITKACRELELKVPLVVRLEGTFMEKK
             350       360       370       380       390       400 

        420       430       440       450       460   
pF1KB5 KALIADSGLKILACDDLDEAARMVVKLSEIVTLAKQAHVDVKFQLPI
                                                      
CCDS54 GSYMHIKQETGNSNENITGIQENVAHQNLSKCAISIFLC        
             410       420       430       440        




463 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:21:59 2016 done: Sat Nov  5 06:22:00 2016
 Total Scan time:  2.880 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]