Result of FASTA (omim) for
pF1KB5126
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5126, 342 aa
1>>>pF1KB5126 342 - 342 aa - 342 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9300+/-0.000304; mu= 14.5323+/- 0.019
mean_var=132.6243+/-28.862, 0's: 0 Z-trim(119.7): 200 B-trim: 526 in 2/55
Lambda= 0.111369
statistics sampled from 33698 (34002) to 33698 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.748), E-opt: 0.2 (0.399), width: 16
Scan time: 8.090
The best scores are: opt bits E(85289)
NP_077007 (OMIM: 611734) methylosome protein 50 is ( 342) 2341 387.2 2.7e-107
NP_001303992 (OMIM: 611734) methylosome protein 50 ( 340) 2312 382.6 6.8e-106
NP_001303991 (OMIM: 611734) methylosome protein 50 ( 354) 1832 305.5 1.1e-82
NP_001303993 (OMIM: 611734) methylosome protein 50 ( 278) 1252 212.2 1.1e-54
NP_001186706 (OMIM: 614784,615973) POC1 centriolar ( 436) 244 50.4 8.4e-06
NP_758440 (OMIM: 614784,615973) POC1 centriolar pr ( 478) 244 50.5 8.9e-06
NP_000279 (OMIM: 215100,266500,601757,614879) pero ( 323) 231 48.2 2.9e-05
XP_005267076 (OMIM: 215100,266500,601757,614879) P ( 285) 229 47.8 3.4e-05
NP_004805 (OMIM: 607797) U5 small nuclear ribonucl ( 357) 217 46.0 0.00015
XP_016878353 (OMIM: 602703,616212) PREDICTED: kata ( 655) 202 43.9 0.0012
XP_016878352 (OMIM: 602703,616212) PREDICTED: kata ( 655) 202 43.9 0.0012
NP_005877 (OMIM: 602703,616212) katanin p80 WD40 r ( 655) 202 43.9 0.0012
XP_006721186 (OMIM: 602703,616212) PREDICTED: kata ( 658) 202 43.9 0.0012
XP_005255829 (OMIM: 602703,616212) PREDICTED: kata ( 672) 202 43.9 0.0012
XP_016878350 (OMIM: 602703,616212) PREDICTED: kata ( 672) 202 43.9 0.0012
XP_016878351 (OMIM: 602703,616212) PREDICTED: kata ( 672) 202 43.9 0.0012
XP_011521112 (OMIM: 602703,616212) PREDICTED: kata ( 675) 202 43.9 0.0012
XP_016878349 (OMIM: 602703,616212) PREDICTED: kata ( 675) 202 43.9 0.0012
XP_006721185 (OMIM: 602703,616212) PREDICTED: kata ( 675) 202 43.9 0.0012
XP_006721184 (OMIM: 602703,616212) PREDICTED: kata ( 675) 202 43.9 0.0012
NP_001287673 (OMIM: 610257) protein transport prot (1067) 200 43.8 0.002
NP_001070674 (OMIM: 610257) protein transport prot (1106) 200 43.8 0.0021
NP_001287674 (OMIM: 610257) protein transport prot (1166) 200 43.8 0.0022
NP_057295 (OMIM: 610257) protein transport protein (1181) 200 43.8 0.0022
NP_001177978 (OMIM: 610257) protein transport prot (1200) 200 43.9 0.0022
NP_001305048 (OMIM: 610257) protein transport prot (1205) 200 43.9 0.0022
NP_001070676 (OMIM: 610257) protein transport prot (1205) 200 43.9 0.0022
NP_001305049 (OMIM: 610257) protein transport prot (1220) 200 43.9 0.0022
NP_001070675 (OMIM: 610257) protein transport prot (1220) 200 43.9 0.0022
NP_001315 (OMIM: 600369) cleavage stimulation fact ( 431) 187 41.3 0.0048
NP_001028694 (OMIM: 600369) cleavage stimulation f ( 431) 187 41.3 0.0048
NP_001028693 (OMIM: 600369) cleavage stimulation f ( 431) 187 41.3 0.0048
XP_011526902 (OMIM: 600369) PREDICTED: cleavage st ( 431) 187 41.3 0.0048
XP_011531866 (OMIM: 614783,614813) PREDICTED: POC1 ( 246) 183 40.3 0.0051
XP_011531865 (OMIM: 614783,614813) PREDICTED: POC1 ( 246) 183 40.3 0.0051
XP_011531867 (OMIM: 614783,614813) PREDICTED: POC1 ( 246) 183 40.3 0.0051
NP_942593 (OMIM: 610767,611081) autophagy-related ( 444) 186 41.1 0.0054
XP_005246143 (OMIM: 610767,611081) PREDICTED: auto ( 463) 186 41.1 0.0056
XP_005246141 (OMIM: 610767,611081) PREDICTED: auto ( 480) 186 41.2 0.0057
NP_001177196 (OMIM: 610767,611081) autophagy-relat ( 491) 186 41.2 0.0058
XP_011531864 (OMIM: 614783,614813) PREDICTED: POC1 ( 300) 183 40.4 0.0059
NP_001177195 (OMIM: 610767,611081) autophagy-relat ( 523) 186 41.2 0.0061
XP_006712671 (OMIM: 610767,611081) PREDICTED: auto ( 540) 186 41.2 0.0062
XP_011531863 (OMIM: 614783,614813) PREDICTED: POC1 ( 326) 183 40.5 0.0062
NP_060444 (OMIM: 610767,611081) autophagy-related ( 588) 186 41.3 0.0066
NP_001155052 (OMIM: 614783,614813) POC1 centriolar ( 359) 183 40.5 0.0066
NP_110430 (OMIM: 610767,611081) autophagy-related ( 607) 186 41.3 0.0067
XP_011531862 (OMIM: 614783,614813) PREDICTED: POC1 ( 374) 183 40.5 0.0068
XP_005246139 (OMIM: 610767,611081) PREDICTED: auto ( 624) 186 41.3 0.0068
NP_056241 (OMIM: 614783,614813) POC1 centriolar pr ( 407) 183 40.6 0.0072
>>NP_077007 (OMIM: 611734) methylosome protein 50 isofor (342 aa)
initn: 2341 init1: 2341 opt: 2341 Z-score: 2047.3 bits: 387.2 E(85289): 2.7e-107
Smith-Waterman score: 2341; 100.0% identity (100.0% similar) in 342 aa overlap (1-342:1-342)
10 20 30 40 50 60
pF1KB5 MRKETPPPLVPPAAREWNLPPNAPACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 MRKETPPPLVPPAAREWNLPPNAPACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 FKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 FKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 DTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_077 DTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFV
250 260 270 280 290 300
310 320 330 340
pF1KB5 RDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLPAPGPASVTE
::::::::::::::::::::::::::::::::::::::::::
NP_077 RDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLPAPGPASVTE
310 320 330 340
>>NP_001303992 (OMIM: 611734) methylosome protein 50 iso (340 aa)
initn: 2312 init1: 1971 opt: 2312 Z-score: 2022.1 bits: 382.6 E(85289): 6.8e-106
Smith-Waterman score: 2312; 99.4% identity (99.4% similar) in 342 aa overlap (1-342:1-340)
10 20 30 40 50 60
pF1KB5 MRKETPPPLVPPAAREWNLPPNAPACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRKETPPPLVPPAAREWNLPPNAPACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 FKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLV
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 DTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFV
:::::::::::::::::::::::::::::::::::::::::::::::::: ::::::::
NP_001 DTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL--SQAHRDFV
250 260 270 280 290
310 320 330 340
pF1KB5 RDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLPAPGPASVTE
::::::::::::::::::::::::::::::::::::::::::
NP_001 RDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLPAPGPASVTE
300 310 320 330 340
>>NP_001303991 (OMIM: 611734) methylosome protein 50 iso (354 aa)
initn: 2327 init1: 1827 opt: 1832 Z-score: 1605.1 bits: 305.5 E(85289): 1.1e-82
Smith-Waterman score: 2307; 96.6% identity (96.6% similar) in 354 aa overlap (1-342:1-354)
10 20 30 40 50 60
pF1KB5 MRKETPPPLVPPAAREWNLPPNAPACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRKETPPPLVPPAAREWNLPPNAPACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 FKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLV
190 200 210 220 230 240
250 260 270 280
pF1KB5 DTKSTSCVLSSAVHSQCVTGLVFSPH------------SVPFLASLSEDCSLAVLDSSLS
:::::::::::::::::::::::::: ::::::::::::::::::::::
NP_001 DTKSTSCVLSSAVHSQCVTGLVFSPHRLDLSQPSPPSDSVPFLASLSEDCSLAVLDSSLS
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB5 ELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLPAPGPASVTE
::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELFRSQAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLPAPGPASVTE
310 320 330 340 350
>>NP_001303993 (OMIM: 611734) methylosome protein 50 iso (278 aa)
initn: 1229 init1: 1229 opt: 1252 Z-score: 1102.7 bits: 212.2 E(85289): 1.1e-54
Smith-Waterman score: 1790; 81.3% identity (81.3% similar) in 342 aa overlap (1-342:1-278)
10 20 30 40 50 60
pF1KB5 MRKETPPPLVPPAAREWNLPPNAPACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MRKETPPPLVPPAAREWNLPPNAPACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 FKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFC
::::::::::::::::::::::::::::::::::::::::
NP_001 FKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDS--------------------
70 80 90 100
130 140 150 160 170 180
pF1KB5 KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD
::::::::::::::::
NP_001 --------------------------------------------AHAAQVTCVAASPHKD
110
190 200 210 220 230 240
pF1KB5 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLV
120 130 140 150 160 170
250 260 270 280 290 300
pF1KB5 DTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFV
180 190 200 210 220 230
310 320 330 340
pF1KB5 RDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLPAPGPASVTE
::::::::::::::::::::::::::::::::::::::::::
NP_001 RDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLPAPGPASVTE
240 250 260 270
>>NP_001186706 (OMIM: 614784,615973) POC1 centriolar pro (436 aa)
initn: 143 init1: 87 opt: 244 Z-score: 225.1 bits: 50.4 E(85289): 8.4e-06
Smith-Waterman score: 244; 28.9% identity (58.7% similar) in 235 aa overlap (93-323:30-253)
70 80 90 100 110 120
pF1KB5 DPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSG--AVELWELDENETLIVSKFC
: :.:: : .:.:: :. .::
NP_001 MLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASASRDRTVRLWIPDKR-----GKFS
10 20 30 40 50
130 140 150 160 170
pF1KB5 KYE-HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK
... : : .:. ..: ...:.: ::::.. .: : : :. : :. ::
NP_001 EFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPD-
60 70 80 90 100 110
180 190 200 210 220 230
pF1KB5 DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSL
...:::::. : .::: . ..... :. :. . . ..:. . . :... ::..
NP_001 GRLIVSCSEDKTIKIWDTTNKQCVNNFSDSV-GF-ANFVDFNPSGTCIASAGSDQ-TVKV
120 130 140 150 160 170
240 250 260 270 280 290
pF1KB5 VDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS-QAHRD
:.. .. . ::: :. . : : : .: . : : .: .:: ..:. . :.:
NP_001 WDVRVNKLLQHYQVHSGGVNCISFHP-SGNYLITASSDGTLKILDLLEGRLIYTLQGHTG
180 190 200 210 220
300 310 320 330 340
pF1KB5 FVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLPAPGPASVTE
: ...: . :... : : ::.
NP_001 PVFTVSFSK-GGELFASGGADTQVLLWRTNFDELHCKGLTKRNLKRLHFDSPPHLLDIYP
230 240 250 260 270 280
>>NP_758440 (OMIM: 614784,615973) POC1 centriolar protei (478 aa)
initn: 143 init1: 87 opt: 244 Z-score: 224.7 bits: 50.5 E(85289): 8.9e-06
Smith-Waterman score: 244; 28.9% identity (58.7% similar) in 235 aa overlap (93-323:72-295)
70 80 90 100 110 120
pF1KB5 DPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSG--AVELWELDENETLIVSKFC
: :.:: : .:.:: :. .::
NP_758 LMLWNFKPHARAYRYVGHKDVVTSVQFSPHGNLLASASRDRTVRLWIPDKR-----GKFS
50 60 70 80 90
130 140 150 160 170
pF1KB5 KYE-HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK
... : : .:. ..: ...:.: ::::.. .: : : :. : :. ::
NP_758 EFKAHTAPVRSVDFSADGQFLATASEDKSIKVWSMYRQRFLYSLYRHTHWVRCAKFSPD-
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB5 DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSL
...:::::. : .::: . ..... :. :. . . ..:. . . :... ::..
NP_758 GRLIVSCSEDKTIKIWDTTNKQCVNNFSDSV-GF-ANFVDFNPSGTCIASAGSDQ-TVKV
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB5 VDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS-QAHRD
:.. .. . ::: :. . : : : .: . : : .: .:: ..:. . :.:
NP_758 WDVRVNKLLQHYQVHSGGVNCISFHP-SGNYLITASSDGTLKILDLLEGRLIYTLQGHTG
220 230 240 250 260 270
300 310 320 330 340
pF1KB5 FVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLPAPGPASVTE
: ...: . :... : : ::.
NP_758 PVFTVSFSK-GGELFASGGADTQVLLWRTNFDELHCKGLTKRNLKRLHFDSPPHLLDIYP
280 290 300 310 320 330
>>NP_000279 (OMIM: 215100,266500,601757,614879) peroxiso (323 aa)
initn: 187 init1: 131 opt: 231 Z-score: 215.4 bits: 48.2 E(85289): 2.9e-05
Smith-Waterman score: 231; 25.3% identity (51.2% similar) in 293 aa overlap (40-322:30-311)
10 20 30 40 50 60
pF1KB5 VPPAAREWNLPPNAPACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPN
: : .... : :.: :. :: :
NP_000 MSAVCGGAARMLRTPGRHGYAAEFSPYLPGRLACATAQHYGIAGCGTL-LILDPDEAGL
10 20 30 40 50
70 80 90 100 110 120
pF1KB5 EGFCSAGVQTEAGVADLTWV--GERGILVASDSGAVELWELDENE-TLIVSKFCKYEHDD
. : : . . :. :.:: .:. ... : .:...::. . : : : :: .
NP_000 RLFRS--FDWNDGLFDVTWSENNEHVLITCSGDGSLQLWDTAKAAGPLQVYK----EHAQ
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB5 IVSTVS-VLSSGTQ-AVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFL
: .:. . : : .:::: : .:.:: . : ..:.: . . . ::: . :
NP_000 EVYSVDWSQTRGEQLVVSGSWDQTVKLWDPTVGKSLCTFRGHESIIYSTIWSPHIPGCFA
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB5 SCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLA--WHPQQSEVFVFGDENGTVSLVDT
: : :. . .::.. :. . :.. :. : . ...: : . .. :
NP_000 SASGDQTLRIWDVK----AAGVRIVIPAHQAEILSCDWCKYNENLLVTGAVDCSLRGWDL
180 190 200 210 220
250 260 270 280 290
pF1KB5 KSTSC-VLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSL--SELFRSQAHRDF
... :. :. . . ::: . ::: : : .. . : : : . : .:
NP_000 RNVRQPVFELLGHTYAIRRVKFSPFHASVLASCSYDFTVRFWNFSKPDSLLETVEHHTEF
230 240 250 260 270 280
300 310 320 330 340
pF1KB5 VRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLPAPGPASVTE
. .: . . .. .::. .
NP_000 TCGLDFSLQSPTQVADCSWDETIKIYDPACLTIPA
290 300 310 320
>>XP_005267076 (OMIM: 215100,266500,601757,614879) PREDI (285 aa)
initn: 187 init1: 131 opt: 229 Z-score: 214.3 bits: 47.8 E(85289): 3.4e-05
Smith-Waterman score: 229; 25.6% identity (51.6% similar) in 277 aa overlap (56-322:8-273)
30 40 50 60 70 80
pF1KB5 CMERQLEAARYRSDGALLLGASSLSGRCWAGSLWLFKDPCAAPNEGFCSAGVQTEAGVAD
:.: :. :: : . : : . . :. :
XP_005 MHTFASCGTL-LILDPDEAGLRLFRS--FDWNDGLFD
10 20 30
90 100 110 120 130 140
pF1KB5 LTWV--GERGILVASDSGAVELWELDENE-TLIVSKFCKYEHDDIVSTVS-VLSSGTQ-A
.:: .:. ... : .:...::. . : : : :: . : .:. . : : .
XP_005 VTWSENNEHVLITCSGDGSLQLWDTAKAAGPLQVYK----EHAQEVYSVDWSQTRGEQLV
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB5 VSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCP
:::: : .:.:: . : ..:.: . . . ::: . : : : :. . .::..
XP_005 VSGSWDQTVKLWDPTVGKSLCTFRGHESIIYSTIWSPHIPGCFASASGDQTLRIWDVK--
100 110 120 130 140
210 220 230 240 250
pF1KB5 KPASQIGCSAPGYLPTSLA--WHPQQSEVFVFGDENGTVSLVDTKSTSC-VLSSAVHSQC
:. . :.. :. : . ...: : . .. : ... :. :.
XP_005 --AAGVRIVIPAHQAEILSCDWCKYNENLLVTGAVDCSLRGWDLRNVRQPVFELLGHTYA
150 160 170 180 190 200
260 270 280 290 300 310
pF1KB5 VTGLVFSPHSVPFLASLSEDCSLAVLDSSL--SELFRSQAHRDFVRDATWSPLNHSLLTT
. . ::: . ::: : : .. . : : : . : .:. .: . . ..
XP_005 IRRVKFSPFHASVLASCSYDFTVRFWNFSKPDSLLETVEHHTEFTCGLDFSLQSPTQVAD
210 220 230 240 250 260
320 330 340
pF1KB5 VGWDHQVVHHVVPTEPLPAPGPASVTE
.::. .
XP_005 CSWDETIKIYDPACLTIPA
270 280
>>NP_004805 (OMIM: 607797) U5 small nuclear ribonucleopr (357 aa)
initn: 260 init1: 89 opt: 217 Z-score: 202.7 bits: 46.0 E(85289): 0.00015
Smith-Waterman score: 217; 27.4% identity (57.4% similar) in 197 aa overlap (90-280:163-351)
60 70 80 90 100 110
pF1KB5 LFKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKF
: . . ..::.:.:.::.. .. .. .
NP_004 VAVWDSETGERVKRLKGHTSFVNSCYPARRGPQLVCTGSDDGTVKLWDIRKKAAIQT---
140 150 160 170 180
120 130 140 150 160 170
pF1KB5 CKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHK
... : .:. ... : .::. : :::::: :. . ..:.:: .:: .. : .
NP_004 --FQNTYQVLAVTFNDTSDQIISGGIDNDIKVWDLRQNKLTYTMRGHADSVTGLSLSS-E
190 200 210 220 230 240
180 190 200 210 220 230
pF1KB5 DSVFLSCSEDNRILLWDTR--CPKPAS-QIGCSAPGYLPTSL---AWHPQQSEVFVFGDE
: .:: . :: . .::.: :: .: . . .: .: :. :.. . :.
NP_004 GSYLLSNAMDNTVRVWDVRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAA-GSA
250 260 270 280 290 300
240 250 260 270 280 290
pF1KB5 NGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRS
. : . :: : . . :. .. ..: : :.. : : : :
NP_004 DRFVYVWDTTSRRILYKLPGHAGSINEVAFHPDE-PIIISASSDKRLYMGEIQ
310 320 330 340 350
300 310 320 330 340
pF1KB5 QAHRDFVRDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLPAPGPASVTE
>>XP_016878353 (OMIM: 602703,616212) PREDICTED: katanin (655 aa)
initn: 154 init1: 107 opt: 202 Z-score: 186.6 bits: 43.9 E(85289): 0.0012
Smith-Waterman score: 202; 25.8% identity (59.6% similar) in 178 aa overlap (91-265:75-241)
70 80 90 100 110 120
pF1KB5 FKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFC
:. :...:.::....:.:. . : .
XP_016 VNLWSINKPNCIMSLTGHTSPVESVRLNTPEELIVAGSQSGSIRVWDLEAAKILRTL---
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD
. : . ... : ..:::.: ::.::. .. . ::.:. : :. :: :
XP_016 -MGHKANICSLDFHPYGEFVASGSQDTNIKLWDIRRKGCVFRYRGHSQAVRCLRFSP--D
110 120 130 140 150
190 200 210 220 230
pF1KB5 SVFL-SCSEDNRILLWDTRCPKPASQIGCSAPGYL-PTSLA-WHPQQSEVFVFGDENGTV
. .: : ..:. . ::: : :.. ::. :.... .::.. ... :. . :.
XP_016 GKWLASAADDHTVKLWDLTAGKMMSEF----PGHTGPVNVVEFHPNEY-LLASGSSDRTI
160 170 180 190 200 210
240 250 260 270 280 290
pF1KB5 SLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHR
. : .. . : . : ...:.:
XP_016 RFWDLEKFQVVSCIEGEPGPVRSVLFNPDGCCLYSGCQDSLRVYGWEPERCFDVVLVNWG
220 230 240 250 260 270
342 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 06:19:00 2016 done: Sat Nov 5 06:19:02 2016
Total Scan time: 8.090 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]