FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5126, 342 aa
  1>>>pF1KB5126 342 - 342 aa - 342 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.4641+/-0.000724; mu= 11.2218+/- 0.043
 mean_var=119.9283+/-25.210, 0's: 0 Z-trim(112.5): 122  B-trim: 0 in 0/54
 Lambda= 0.117115
 statistics sampled from 13063 (13217) to 13063 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.406), width:  16
 Scan time:  2.010

The best scores are:                                      opt bits E(32554)
CCDS835.1 WDR77 gene_id:79084|Hs108|chr1           ( 342) 2341 406.2  2e-113


>>CCDS835.1 WDR77 gene_id:79084|Hs108|chr1                (342 aa)
 initn: 2341 init1: 2341 opt: 2341  Z-score: 2150.0  bits: 406.2 E(32554): 2e-113
Smith-Waterman score: 2341; 100.0% identity (100.0% similar) in 342 aa overlap (1-342:1-342)

               10        20        30        40        50        60
pF1KB5 MRKETPPPLVPPAAREWNLPPNAPACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 MRKETPPPLVPPAAREWNLPPNAPACMERQLEAARYRSDGALLLGASSLSGRCWAGSLWL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 FKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 FKDPCAAPNEGFCSAGVQTEAGVADLTWVGERGILVASDSGAVELWELDENETLIVSKFC
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 KYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 DTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS83 DTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFV
              250       260       270       280       290       300

              310       320       330       340  
pF1KB5 RDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLPAPGPASVTE
       ::::::::::::::::::::::::::::::::::::::::::
CCDS83 RDATWSPLNHSLLTTVGWDHQVVHHVVPTEPLPAPGPASVTE
              310       320       330       340  




342 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:19:00 2016 done: Sat Nov  5 06:19:00 2016
 Total Scan time:  2.010 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]