Result of FASTA (omim) for
pF1KB5046
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5046, 396 aa
1>>>pF1KB5046 396 - 396 aa - 396 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.2147+/-0.000341; mu= 17.1746+/- 0.021
mean_var=61.4141+/-12.338, 0's: 0 Z-trim(113.8): 21 B-trim: 0 in 0/55
Lambda= 0.163659
statistics sampled from 23253 (23274) to 23253 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.646), E-opt: 0.2 (0.273), width: 16
Scan time: 8.810
The best scores are: opt bits E(85289)
NP_001107657 (OMIM: 175900,251170,260920,610377) m ( 396) 2593 620.8 1.8e-177
XP_016874803 (OMIM: 175900,251170,260920,610377) P ( 396) 2593 620.8 1.8e-177
NP_000422 (OMIM: 175900,251170,260920,610377) meva ( 396) 2593 620.8 1.8e-177
XP_011536674 (OMIM: 175900,251170,260920,610377) P ( 496) 2593 620.8 2.2e-177
XP_016874802 (OMIM: 175900,251170,260920,610377) P ( 344) 1460 353.2 5.4e-97
NP_001288111 (OMIM: 175900,251170,260920,610377) m ( 344) 1460 353.2 5.4e-97
>>NP_001107657 (OMIM: 175900,251170,260920,610377) meval (396 aa)
initn: 2593 init1: 2593 opt: 2593 Z-score: 3307.2 bits: 620.8 E(85289): 1.8e-177
Smith-Waterman score: 2593; 99.7% identity (100.0% similar) in 396 aa overlap (1-396:1-396)
10 20 30 40 50 60
pF1KB5 MLSEVLLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLNLPNIGIKR
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_001 MLSEVLLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLSLPNIGIKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 AWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSIC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 RKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 NQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQAL
310 320 330 340 350 360
370 380 390
pF1KB5 TSCGFDCLETSIGAPGVSIHSATSLDSRVQQALDGL
::::::::::::::::::::::::::::::::::::
NP_001 TSCGFDCLETSIGAPGVSIHSATSLDSRVQQALDGL
370 380 390
>>XP_016874803 (OMIM: 175900,251170,260920,610377) PREDI (396 aa)
initn: 2593 init1: 2593 opt: 2593 Z-score: 3307.2 bits: 620.8 E(85289): 1.8e-177
Smith-Waterman score: 2593; 99.7% identity (100.0% similar) in 396 aa overlap (1-396:1-396)
10 20 30 40 50 60
pF1KB5 MLSEVLLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLNLPNIGIKR
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
XP_016 MLSEVLLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLSLPNIGIKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 AWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSIC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 RKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 NQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQAL
310 320 330 340 350 360
370 380 390
pF1KB5 TSCGFDCLETSIGAPGVSIHSATSLDSRVQQALDGL
::::::::::::::::::::::::::::::::::::
XP_016 TSCGFDCLETSIGAPGVSIHSATSLDSRVQQALDGL
370 380 390
>>NP_000422 (OMIM: 175900,251170,260920,610377) mevalona (396 aa)
initn: 2593 init1: 2593 opt: 2593 Z-score: 3307.2 bits: 620.8 E(85289): 1.8e-177
Smith-Waterman score: 2593; 99.7% identity (100.0% similar) in 396 aa overlap (1-396:1-396)
10 20 30 40 50 60
pF1KB5 MLSEVLLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLNLPNIGIKR
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_000 MLSEVLLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLSLPNIGIKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 AWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 AWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSIC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 RKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 RKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 NQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_000 NQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQAL
310 320 330 340 350 360
370 380 390
pF1KB5 TSCGFDCLETSIGAPGVSIHSATSLDSRVQQALDGL
::::::::::::::::::::::::::::::::::::
NP_000 TSCGFDCLETSIGAPGVSIHSATSLDSRVQQALDGL
370 380 390
>>XP_011536674 (OMIM: 175900,251170,260920,610377) PREDI (496 aa)
initn: 2593 init1: 2593 opt: 2593 Z-score: 3305.7 bits: 620.8 E(85289): 2.2e-177
Smith-Waterman score: 2593; 99.7% identity (100.0% similar) in 396 aa overlap (1-396:101-496)
10 20 30
pF1KB5 MLSEVLLVSAPGKVILHGEHAVVHGKVALA
::::::::::::::::::::::::::::::
XP_011 TGPDPARFPSSPRGDSTHSWPRHRSGFPGAMLSEVLLVSAPGKVILHGEHAVVHGKVALA
80 90 100 110 120 130
40 50 60 70 80 90
pF1KB5 VSLNLRTFLRLQPHSNGKVDLNLPNIGIKRAWDVARLQSLDTSFLEQGDVTTPTSEQVEK
:::::::::::::::::::::.::::::::::::::::::::::::::::::::::::::
XP_011 VSLNLRTFLRLQPHSNGKVDLSLPNIGIKRAWDVARLQSLDTSFLEQGDVTTPTSEQVEK
140 150 160 170 180 190
100 110 120 130 140 150
pF1KB5 LKEVAGLPDDCAVTERLAVLAFLYLYLSICRKQRALPSLDIVVWSELPPGAGLGSSAAYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LKEVAGLPDDCAVTERLAVLAFLYLYLSICRKQRALPSLDIVVWSELPPGAGLGSSAAYS
200 210 220 230 240 250
160 170 180 190 200 210
pF1KB5 VCLAAALLTVCEEIPNPLKDGDCVNRWTKEDLELINKWAFQGERMIHGNPSGVDNAVSTW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VCLAAALLTVCEEIPNPLKDGDCVNRWTKEDLELINKWAFQGERMIHGNPSGVDNAVSTW
260 270 280 290 300 310
220 230 240 250 260 270
pF1KB5 GGALRYHQGKISSLKRSPALQILLTNTKVPRNTRALVAGVRNRLLKFPEIVAPLLTSIDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GGALRYHQGKISSLKRSPALQILLTNTKVPRNTRALVAGVRNRLLKFPEIVAPLLTSIDA
320 330 340 350 360 370
280 290 300 310 320 330
pF1KB5 ISLECERVLGEMGEAPAPEQYLVLEELIDMNQHHLNALGVGHASLDQLCQVTRARGLHSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 ISLECERVLGEMGEAPAPEQYLVLEELIDMNQHHLNALGVGHASLDQLCQVTRARGLHSK
380 390 400 410 420 430
340 350 360 370 380 390
pF1KB5 LTGAGGGGCGITLLKPGLEQPEVEATKQALTSCGFDCLETSIGAPGVSIHSATSLDSRVQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 LTGAGGGGCGITLLKPGLEQPEVEATKQALTSCGFDCLETSIGAPGVSIHSATSLDSRVQ
440 450 460 470 480 490
pF1KB5 QALDGL
::::::
XP_011 QALDGL
>>XP_016874802 (OMIM: 175900,251170,260920,610377) PREDI (344 aa)
initn: 1460 init1: 1460 opt: 1460 Z-score: 1862.4 bits: 353.2 E(85289): 5.4e-97
Smith-Waterman score: 2126; 86.6% identity (86.9% similar) in 396 aa overlap (1-396:1-344)
10 20 30 40 50 60
pF1KB5 MLSEVLLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLNLPNIGIKR
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
XP_016 MLSEVLLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLSLPNIGIKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 AWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSIC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 RKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKE
:::: ::::
XP_016 RKQR----------------------------------------------------WTKE
190 200 210 220 230 240
pF1KB5 DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP
130 140 150 160 170 180
250 260 270 280 290 300
pF1KB5 RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDM
190 200 210 220 230 240
310 320 330 340 350 360
pF1KB5 NQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQAL
250 260 270 280 290 300
370 380 390
pF1KB5 TSCGFDCLETSIGAPGVSIHSATSLDSRVQQALDGL
::::::::::::::::::::::::::::::::::::
XP_016 TSCGFDCLETSIGAPGVSIHSATSLDSRVQQALDGL
310 320 330 340
>>NP_001288111 (OMIM: 175900,251170,260920,610377) meval (344 aa)
initn: 1460 init1: 1460 opt: 1460 Z-score: 1862.4 bits: 353.2 E(85289): 5.4e-97
Smith-Waterman score: 2126; 86.6% identity (86.9% similar) in 396 aa overlap (1-396:1-344)
10 20 30 40 50 60
pF1KB5 MLSEVLLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLNLPNIGIKR
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_001 MLSEVLLVSAPGKVILHGEHAVVHGKVALAVSLNLRTFLRLQPHSNGKVDLSLPNIGIKR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 AWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSIC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AWDVARLQSLDTSFLEQGDVTTPTSEQVEKLKEVAGLPDDCAVTERLAVLAFLYLYLSIC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 RKQRALPSLDIVVWSELPPGAGLGSSAAYSVCLAAALLTVCEEIPNPLKDGDCVNRWTKE
:::: ::::
NP_001 RKQR----------------------------------------------------WTKE
190 200 210 220 230 240
pF1KB5 DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DLELINKWAFQGERMIHGNPSGVDNAVSTWGGALRYHQGKISSLKRSPALQILLTNTKVP
130 140 150 160 170 180
250 260 270 280 290 300
pF1KB5 RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RNTRALVAGVRNRLLKFPEIVAPLLTSIDAISLECERVLGEMGEAPAPEQYLVLEELIDM
190 200 210 220 230 240
310 320 330 340 350 360
pF1KB5 NQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQAL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 NQHHLNALGVGHASLDQLCQVTRARGLHSKLTGAGGGGCGITLLKPGLEQPEVEATKQAL
250 260 270 280 290 300
370 380 390
pF1KB5 TSCGFDCLETSIGAPGVSIHSATSLDSRVQQALDGL
::::::::::::::::::::::::::::::::::::
NP_001 TSCGFDCLETSIGAPGVSIHSATSLDSRVQQALDGL
310 320 330 340
396 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:21:47 2016 done: Fri Nov 4 03:21:48 2016
Total Scan time: 8.810 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]