FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5034, 316 aa
  1>>>pF1KB5034 316 - 316 aa - 316 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7926+/-0.000955; mu= 13.3909+/- 0.057
 mean_var=71.2824+/-13.709, 0's: 0 Z-trim(105.1): 17  B-trim: 0 in 0/51
 Lambda= 0.151909
 statistics sampled from 8223 (8231) to 8223 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.629), E-opt: 0.2 (0.253), width:  16
 Scan time:  2.580

The best scores are:                                      opt bits E(32554)
CCDS10517.1 HMOX2 gene_id:3163|Hs108|chr16         ( 316) 2072 463.3 1.1e-130
CCDS73818.1 HMOX2 gene_id:3163|Hs108|chr16         ( 370) 2072 463.3 1.3e-130
CCDS66931.1 HMOX2 gene_id:3163|Hs108|chr16         ( 287) 1896 424.7 4.2e-119
CCDS13914.1 HMOX1 gene_id:3162|Hs108|chr22         ( 288)  837 192.6 3.1e-49


>>CCDS10517.1 HMOX2 gene_id:3163|Hs108|chr16              (316 aa)
 initn: 2072 init1: 2072 opt: 2072  Z-score: 2459.5  bits: 463.3 E(32554): 1.1e-130
Smith-Waterman score: 2072; 100.0% identity (100.0% similar) in 316 aa overlap (1-316:1-316)

               10        20        30        40        50        60
pF1KB5 MSAEVETSEGVDESEKKNSGALEKENQMRMADLSELLKEGTKEAHDRAENTQFVKDFLKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSAEVETSEGVDESEKKNSGALEKENQMRMADLSELLKEGTKEAHDRAENTQFVKDFLKG
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 NIKKELFKLATTALYFTYSALEEEMERNKDHPAFAPLYFPMELHRKEALTKDMEYFFGEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 NIKKELFKLATTALYFTYSALEEEMERNKDHPAFAPLYFPMELHRKEALTKDMEYFFGEN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 WEEQVQCPKAAQKYVERIHYIGQNEPELLVAHAYTRYMGDLSGGQVLKKVAQRALKLPST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 WEEQVQCPKAAQKYVERIHYIGQNEPELLVAHAYTRYMGDLSGGQVLKKVAQRALKLPST
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 GEGTQFYLFENVDNAQQFKQLYRARMNALDLNMKTKERIVEEANKAFEYNMQIFNELDQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GEGTQFYLFENVDNAQQFKQLYRARMNALDLNMKTKERIVEEANKAFEYNMQIFNELDQA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 GSTLARETLEDGFPVHDGKGDMRKCPFYAAEQDKGALEGSSCPFRTAMAVLRKPSLQFIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GSTLARETLEDGFPVHDGKGDMRKCPFYAAEQDKGALEGSSCPFRTAMAVLRKPSLQFIL
              250       260       270       280       290       300

              310      
pF1KB5 AAGVALAAGLLAWYYM
       ::::::::::::::::
CCDS10 AAGVALAAGLLAWYYM
              310      

>>CCDS73818.1 HMOX2 gene_id:3163|Hs108|chr16              (370 aa)
 initn: 2072 init1: 2072 opt: 2072  Z-score: 2458.4  bits: 463.3 E(32554): 1.3e-130
Smith-Waterman score: 2072; 100.0% identity (100.0% similar) in 316 aa overlap (1-316:55-370)

                                             10        20        30
pF1KB5                               MSAEVETSEGVDESEKKNSGALEKENQMRM
                                     ::::::::::::::::::::::::::::::
CCDS73 GSRDSPASASCVAGITGPEEREQQEPHPAAMSAEVETSEGVDESEKKNSGALEKENQMRM
           30        40        50        60        70        80    

               40        50        60        70        80        90
pF1KB5 ADLSELLKEGTKEAHDRAENTQFVKDFLKGNIKKELFKLATTALYFTYSALEEEMERNKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 ADLSELLKEGTKEAHDRAENTQFVKDFLKGNIKKELFKLATTALYFTYSALEEEMERNKD
           90       100       110       120       130       140    

              100       110       120       130       140       150
pF1KB5 HPAFAPLYFPMELHRKEALTKDMEYFFGENWEEQVQCPKAAQKYVERIHYIGQNEPELLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 HPAFAPLYFPMELHRKEALTKDMEYFFGENWEEQVQCPKAAQKYVERIHYIGQNEPELLV
          150       160       170       180       190       200    

              160       170       180       190       200       210
pF1KB5 AHAYTRYMGDLSGGQVLKKVAQRALKLPSTGEGTQFYLFENVDNAQQFKQLYRARMNALD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 AHAYTRYMGDLSGGQVLKKVAQRALKLPSTGEGTQFYLFENVDNAQQFKQLYRARMNALD
          210       220       230       240       250       260    

              220       230       240       250       260       270
pF1KB5 LNMKTKERIVEEANKAFEYNMQIFNELDQAGSTLARETLEDGFPVHDGKGDMRKCPFYAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 LNMKTKERIVEEANKAFEYNMQIFNELDQAGSTLARETLEDGFPVHDGKGDMRKCPFYAA
          270       280       290       300       310       320    

              280       290       300       310      
pF1KB5 EQDKGALEGSSCPFRTAMAVLRKPSLQFILAAGVALAAGLLAWYYM
       ::::::::::::::::::::::::::::::::::::::::::::::
CCDS73 EQDKGALEGSSCPFRTAMAVLRKPSLQFILAAGVALAAGLLAWYYM
          330       340       350       360       370

>>CCDS66931.1 HMOX2 gene_id:3163|Hs108|chr16              (287 aa)
 initn: 1896 init1: 1896 opt: 1896  Z-score: 2251.7  bits: 424.7 E(32554): 4.2e-119
Smith-Waterman score: 1896; 100.0% identity (100.0% similar) in 287 aa overlap (30-316:1-287)

               10        20        30        40        50        60
pF1KB5 MSAEVETSEGVDESEKKNSGALEKENQMRMADLSELLKEGTKEAHDRAENTQFVKDFLKG
                                    :::::::::::::::::::::::::::::::
CCDS66                              MADLSELLKEGTKEAHDRAENTQFVKDFLKG
                                            10        20        30 

               70        80        90       100       110       120
pF1KB5 NIKKELFKLATTALYFTYSALEEEMERNKDHPAFAPLYFPMELHRKEALTKDMEYFFGEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 NIKKELFKLATTALYFTYSALEEEMERNKDHPAFAPLYFPMELHRKEALTKDMEYFFGEN
              40        50        60        70        80        90 

              130       140       150       160       170       180
pF1KB5 WEEQVQCPKAAQKYVERIHYIGQNEPELLVAHAYTRYMGDLSGGQVLKKVAQRALKLPST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 WEEQVQCPKAAQKYVERIHYIGQNEPELLVAHAYTRYMGDLSGGQVLKKVAQRALKLPST
             100       110       120       130       140       150 

              190       200       210       220       230       240
pF1KB5 GEGTQFYLFENVDNAQQFKQLYRARMNALDLNMKTKERIVEEANKAFEYNMQIFNELDQA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GEGTQFYLFENVDNAQQFKQLYRARMNALDLNMKTKERIVEEANKAFEYNMQIFNELDQA
             160       170       180       190       200       210 

              250       260       270       280       290       300
pF1KB5 GSTLARETLEDGFPVHDGKGDMRKCPFYAAEQDKGALEGSSCPFRTAMAVLRKPSLQFIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GSTLARETLEDGFPVHDGKGDMRKCPFYAAEQDKGALEGSSCPFRTAMAVLRKPSLQFIL
             220       230       240       250       260       270 

              310      
pF1KB5 AAGVALAAGLLAWYYM
       ::::::::::::::::
CCDS66 AAGVALAAGLLAWYYM
             280       

>>CCDS13914.1 HMOX1 gene_id:3162|Hs108|chr22              (288 aa)
 initn: 837 init1: 837 opt: 837  Z-score: 997.4  bits: 192.6 E(32554): 3.1e-49
Smith-Waterman score: 837; 56.2% identity (83.2% similar) in 208 aa overlap (32-239:12-219)

              10        20        30        40        50        60 
pF1KB5 SAEVETSEGVDESEKKNSGALEKENQMRMADLSELLKEGTKEAHDRAENTQFVKDFLKGN
                                     :::: :::.:::.: .:::..:...: ::.
CCDS13                    MERPQPDSMPQDLSEALKEATKEVHTQAENAEFMRNFQKGQ
                                  10        20        30        40 

              70        80        90       100       110       120 
pF1KB5 IKKELFKLATTALYFTYSALEEEMERNKDHPAFAPLYFPMELHRKEALTKDMEYFFGENW
       . .. :::. ..::  : :::::.::::. :.:::.::: ::::: :: .:. ...:  :
CCDS13 VTRDGFKLVMASLYHIYVALEEEIERNKESPVFAPVYFPEELHRKAALEQDLAFWYGPRW
              50        60        70        80        90       100 

             130       140       150       160       170       180 
pF1KB5 EEQVQCPKAAQKYVERIHYIGQNEPELLVAHAYTRYMGDLSGGQVLKKVAQRALKLPSTG
       .: .    : :.::.:.: .:..:::::::::::::.:::::::::::.::.:: :::.:
CCDS13 QEVIPYTPAMQRYVKRLHEVGRTEPELLVAHAYTRYLGDLSGGQVLKKIAQKALDLPSSG
             110       120       130       140       150       160 

             190       200       210       220       230       240 
pF1KB5 EGTQFYLFENVDNAQQFKQLYRARMNALDLNMKTKERIVEEANKAFEYNMQIFNELDQAG
       ::  :. : :. .: .::::::.:::.:...  ...:..:::. ::  :.:.:.::..  
CCDS13 EGLAFFTFPNIASATKFKQLYRSRMNSLEMTPAVRQRVIEEAKTAFLLNIQLFEELQELL
             170       180       190       200       210       220 

             250       260       270       280       290       300 
pF1KB5 STLARETLEDGFPVHDGKGDMRKCPFYAAEQDKGALEGSSCPFRTAMAVLRKPSLQFILA
                                                                   
CCDS13 THDTKDQSPSRAPGLRQRASNKVQDSAPVETPRGKPPLNTRSQAPLLRWVLTLSFLVATV
             230       240       250       260       270       280 




316 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:37:57 2016 done: Sat Nov  5 19:37:57 2016
 Total Scan time:  2.580 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]