FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB5024, 428 aa
  1>>>pF1KB5024 428 - 428 aa - 428 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.5838+/-0.0014; mu= 7.2749+/- 0.083
 mean_var=152.3953+/-31.121, 0's: 0 Z-trim(103.7): 43  B-trim: 58 in 2/48
 Lambda= 0.103894
 statistics sampled from 7522 (7537) to 7522 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.576), E-opt: 0.2 (0.232), width:  16
 Scan time:  2.940

The best scores are:                                      opt bits E(32554)
CCDS11245.2 FLOT2 gene_id:2319|Hs108|chr17         ( 428) 2688 415.3 5.6e-116
CCDS82097.1 FLOT2 gene_id:2319|Hs108|chr17         ( 428) 2634 407.3 1.5e-113
CCDS4688.1 FLOT1 gene_id:10211|Hs108|chr6          ( 427) 1240 198.3 1.2e-50


>>CCDS11245.2 FLOT2 gene_id:2319|Hs108|chr17              (428 aa)
 initn: 2688 init1: 2688 opt: 2688  Z-score: 2195.7  bits: 415.3 E(32554): 5.6e-116
Smith-Waterman score: 2688; 100.0% identity (100.0% similar) in 428 aa overlap (1-428:1-428)

               10        20        30        40        50        60
pF1KB5 MGNCHTVGPNEALVVSGGCCGSDYKQYVFGGWAWAWWCISDTQRISLEIMTLQPRCEDVE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MGNCHTVGPNEALVVSGGCCGSDYKQYVFGGWAWAWWCISDTQRISLEIMTLQPRCEDVE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 TAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 EQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTAVVQRDAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 EQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTAVVQRDAD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 IGVAEAERDAGIREAECKKEMLDVKFMADTKIADSKRAFELQKSAFSEEVNIKTAEAQLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 IGVAEAERDAGIREAECKKEMLDVKFMADTKIADSKRAFELQKSAFSEEVNIKTAEAQLA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 YELQGAREQQKIRQEEIEIEVVQRKKQIAVEAQEILRTDKELIATVRRPAEAEAHRIQQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 YELQGAREQQKIRQEEIEIEVVQRKKQIAVEAQEILRTDKELIATVRRPAEAEAHRIQQI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 AEGEKVKQVLLAQAEAEKIRKIGEAEAAVIEAMGKAEAERMKLKAEAYQKYGDAAKMALV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 AEGEKVKQVLLAQAEAEKIRKIGEAEAAVIEAMGKAEAERMKLKAEAYQKYGDAAKMALV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 LEALPQIAAKIAAPLTKVDEIVVLSGDNSKVTSEVNRLLAELPASVHALTGVDLSKIPLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LEALPQIAAKIAAPLTKVDEIVVLSGDNSKVTSEVNRLLAELPASVHALTGVDLSKIPLI
              370       380       390       400       410       420

               
pF1KB5 KKATGVQV
       ::::::::
CCDS11 KKATGVQV
               

>>CCDS82097.1 FLOT2 gene_id:2319|Hs108|chr17              (428 aa)
 initn: 2634 init1: 2634 opt: 2634  Z-score: 2152.0  bits: 407.3 E(32554): 1.5e-113
Smith-Waterman score: 2634; 97.7% identity (99.1% similar) in 428 aa overlap (1-428:1-428)

               10        20        30        40        50        60
pF1KB5 MGNCHTVGPNEALVVSGGCCGSDYKQYVFGGWAWAWWCISDTQRISLEIMTLQPRCEDVE
       ::::::::::::::::::::::::::::::::::::::::::::.:::.::.  :::..:
CCDS82 MGNCHTVGPNEALVVSGGCCGSDYKQYVFGGWAWAWWCISDTQRLSLEVMTILCRCENIE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB5 TAEGVALTVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTV
       :.::: : ::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 TSEGVPLFVTGVAQVKIMTEKELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLTV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB5 EQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTAVVQRDAD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 EQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTAVVQRDAD
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB5 IGVAEAERDAGIREAECKKEMLDVKFMADTKIADSKRAFELQKSAFSEEVNIKTAEAQLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 IGVAEAERDAGIREAECKKEMLDVKFMADTKIADSKRAFELQKSAFSEEVNIKTAEAQLA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB5 YELQGAREQQKIRQEEIEIEVVQRKKQIAVEAQEILRTDKELIATVRRPAEAEAHRIQQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 YELQGAREQQKIRQEEIEIEVVQRKKQIAVEAQEILRTDKELIATVRRPAEAEAHRIQQI
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB5 AEGEKVKQVLLAQAEAEKIRKIGEAEAAVIEAMGKAEAERMKLKAEAYQKYGDAAKMALV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 AEGEKVKQVLLAQAEAEKIRKIGEAEAAVIEAMGKAEAERMKLKAEAYQKYGDAAKMALV
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB5 LEALPQIAAKIAAPLTKVDEIVVLSGDNSKVTSEVNRLLAELPASVHALTGVDLSKIPLI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LEALPQIAAKIAAPLTKVDEIVVLSGDNSKVTSEVNRLLAELPASVHALTGVDLSKIPLI
              370       380       390       400       410       420

               
pF1KB5 KKATGVQV
       ::::::::
CCDS82 KKATGVQV
               

>>CCDS4688.1 FLOT1 gene_id:10211|Hs108|chr6               (427 aa)
 initn: 1406 init1: 987 opt: 1240  Z-score: 1022.8  bits: 198.3 E(32554): 1.2e-50
Smith-Waterman score: 1240; 47.6% identity (80.4% similar) in 418 aa overlap (6-417:4-419)

               10        20        30        40        50        60
pF1KB5 MGNCHTVGPNEALVVSGGCCGSDYKQYVFGGWAWAWWCISDTQRISLEIMTLQPRCEDVE
            : :::::.:::: : .     .: :: ...  ::.. :::::. .::. . : : 
CCDS46   MFFTCGPNEAMVVSGFCRSPPV--MVAGGRVFVLPCIQQIQRISLNTLTLNVKSEKVY
                 10        20          30        40        50      

               70        80         90       100       110         
pF1KB5 TAEGVALTVTGVAQVKIMTE-KELLAVACEQFLGKNVQDIKNVVLQTLEGHLRSILGTLT
       : .:: ..:::.:::::. . ::.::.::..::::.  .: ...:.::::: :.:.. .:
CCDS46 TRHGVPISVTGIAQVKIQGQNKEMLAAACQMFLGKTEAEIAHIALETLEGHQRAIMAHMT
         60        70        80        90       100       110      

     120       130       140       150       160       170         
pF1KB5 VEQIYQDRDQFAKLVREVAAPDVGRMGIEILSFTIKDVYDKVDYLSSLGKTQTAVVQRDA
       ::.::.::..:.. : .::. :.  ::: ..:.:.::..:  ::: ::::..:: ::.::
CCDS46 VEEIYKDRQKFSEQVFKVASSDLVNMGISVVSYTLKDIHDDQDYLHSLGKARTAQVQKDA
        120       130       140       150       160       170      

     180       190       200       210       220       230         
pF1KB5 DIGVAEAERDAGIREAECKKEMLDVKFMADTKIADSKRAFELQKSAFSEEVNIKTAEAQL
        :: :::.::::::::. :.: ........ ..: ..: .::.:.:.. ::: . :.:.:
CCDS46 RIGEAEAKRDAGIREAKAKQEKVSAQYLSEIEMAKAQRDYELKKAAYDIEVNTRRAQADL
        180       190       200       210       220       230      

     240       250       260       270       280       290         
pF1KB5 AYELQGAREQQKIRQEEIEIEVVQRKKQIAVEAQEILRTDKELIATVRRPAEAEAHRIQQ
       ::.:: :. .:.:........::.: .:.::. ::: : .::: : ::.::::: .....
CCDS46 AYQLQVAKTKQQIEEQRVQVQVVERAQQVAVQEQEIARREKELEARVRKPAEAERYKLER
        240       250       260       270       280       290      

     300       310       320       330       340       350         
pF1KB5 IAEGEKVKQVLLAQAEAEKIRKIGEAEAAVIEAMGKAEAERMKLKAEAYQKYGDAAKMAL
       .::.:: . .. :.::: ..:  ::::: .: : ..::::.:  ::::.: : .::.. .
CCDS46 LAEAEKSQLIMQAEAEAASVRMRGEAEAFAIGARARAEAEQMAKKAEAFQLYQEAAQLDM
        300       310       320       330       340       350      

     360       370       380            390       400       410    
pF1KB5 VLEALPQIAAKIAAPLTKVDEIVVLSGDN-----SKVTSEVNRLLAELPASVHALTGVDL
       .:: :::.: .:..:::....:...:. .     .:::.::  .:..:: ::. ::::..
CCDS46 LLEKLPQVAEEISGPLTSANKITLVSSGSGTMGAAKVTGEVLDILTRLPESVERLTGVSI
        360       370       380       390       400       410      

          420        
pF1KB5 SKIPLIKKATGVQV
       :..           
CCDS46 SQVNHKPLRTA   
        420          




428 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:21:09 2016 done: Sat Nov  5 12:21:10 2016
 Total Scan time:  2.940 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]