FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4995, 674 aa
  1>>>pF1KB4995 674 - 674 aa - 674 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.8057+/-0.000968; mu= -0.6800+/- 0.059
 mean_var=380.3251+/-76.836, 0's: 0 Z-trim(116.4): 95  B-trim: 11 in 1/54
 Lambda= 0.065765
 statistics sampled from 16930 (17021) to 16930 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.779), E-opt: 0.2 (0.523), width:  16
 Scan time:  4.940

The best scores are:                                      opt bits E(32554)
CCDS12652.2 CLASRP gene_id:11129|Hs108|chr19       ( 674) 4457 436.8 4.7e-122
CCDS62710.1 CLASRP gene_id:11129|Hs108|chr19       ( 612) 3739 368.7 1.4e-101


>>CCDS12652.2 CLASRP gene_id:11129|Hs108|chr19            (674 aa)
 initn: 4457 init1: 4457 opt: 4457  Z-score: 2304.7  bits: 436.8 E(32554): 4.7e-122
Smith-Waterman score: 4457; 100.0% identity (100.0% similar) in 674 aa overlap (1-674:1-674)

               10        20        30        40        50        60
pF1KB4 MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 ESPVNMMPWQGDTNNMIDRFDVRAHLDHIPDYTPPLLTTISPEQESDERKCNYERYRGLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 ESPVNMMPWQGDTNNMIDRFDVRAHLDHIPDYTPPLLTTISPEQESDERKCNYERYRGLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 QNDFAGISEEQCLYQIYIDELYGGLQRPSEDEKKKLAEKKASIGYTYEDSTVAEVEKAAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QNDFAGISEEQCLYQIYIDELYGGLQRPSEDEKKKLAEKKASIGYTYEDSTVAEVEKAAE
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 KPEEEESAAEEESNSDEDEVIPDIDVEVDVDELNQEQVADLNKQATTYGMADGDFVRMLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KPEEEESAAEEESNSDEDEVIPDIDVEVDVDELNQEQVADLNKQATTYGMADGDFVRMLR
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 KDKEEAEAIKHAKALEEEKAMYSGRRSRRQRREFREKRLRGRKISPPSYARRDSPTYDPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KDKEEAEAIKHAKALEEEKAMYSGRRSRRQRREFREKRLRGRKISPPSYARRDSPTYDPY
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 KRSPSESSSESRSRSRSPTPGREEKITFITSFGGSDEEAAAAAAAAAASGVTTGKPPAPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 KRSPSESSSESRSRSRSPTPGREEKITFITSFGGSDEEAAAAAAAAAASGVTTGKPPAPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 QPGGPAPGRNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 QPGGPAPGRNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 SWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSRSPARRGGYGPRRRSRSRSHSGDRYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 SWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSRSPARRGGYGPRRRSRSRSHSGDRYR
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB4 RGGRGLRHHSSSRSRSSWSLSPSRSRSLTRSRSHSPSPSQSRSRSRSRSQSPSPSPAREK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 RGGRGLRHHSSSRSRSSWSLSPSRSRSLTRSRSHSPSPSQSRSRSRSRSQSPSPSPAREK
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB4 LTRPAASPAVGEKLKKTEPAAGKETGAAKPKLTPQEKLKLRMQKALNRQFKADKKAAQEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 LTRPAASPAVGEKLKKTEPAAGKETGAAKPKLTPQEKLKLRMQKALNRQFKADKKAAQEK
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB4 MIQQEHERQEREDELRAMARKIRMKERERREKEREEWERQYSRQSRSPSPRYSREYSSSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS12 MIQQEHERQEREDELRAMARKIRMKERERREKEREEWERQYSRQSRSPSPRYSREYSSSR
              610       620       630       640       650       660

              670    
pF1KB4 RRSRSRSRSPHYRH
       ::::::::::::::
CCDS12 RRSRSRSRSPHYRH
              670    

>>CCDS62710.1 CLASRP gene_id:11129|Hs108|chr19            (612 aa)
 initn: 3739 init1: 3739 opt: 3739  Z-score: 1937.1  bits: 368.7 E(32554): 1.4e-101
Smith-Waterman score: 3890; 90.8% identity (90.8% similar) in 674 aa overlap (1-674:1-612)

               10        20        30        40        50        60
pF1KB4 MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQVHGRACKVHLDSAVALAA
       ::::::::::::::::::::::::::::::::::::::::::                  
CCDS62 MWHEARKHERKLRGMMVDYKKRAERRREYYEKIKKDPAQFLQ------------------
               10        20        30        40                    

               70        80        90       100       110       120
pF1KB4 ESPVNMMPWQGDTNNMIDRFDVRAHLDHIPDYTPPLLTTISPEQESDERKCNYERYRGLV
                                                   ::::::::::::::::
CCDS62 --------------------------------------------ESDERKCNYERYRGLV
                                                         50        

              130       140       150       160       170       180
pF1KB4 QNDFAGISEEQCLYQIYIDELYGGLQRPSEDEKKKLAEKKASIGYTYEDSTVAEVEKAAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 QNDFAGISEEQCLYQIYIDELYGGLQRPSEDEKKKLAEKKASIGYTYEDSTVAEVEKAAE
       60        70        80        90       100       110        

              190       200       210       220       230       240
pF1KB4 KPEEEESAAEEESNSDEDEVIPDIDVEVDVDELNQEQVADLNKQATTYGMADGDFVRMLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 KPEEEESAAEEESNSDEDEVIPDIDVEVDVDELNQEQVADLNKQATTYGMADGDFVRMLR
      120       130       140       150       160       170        

              250       260       270       280       290       300
pF1KB4 KDKEEAEAIKHAKALEEEKAMYSGRRSRRQRREFREKRLRGRKISPPSYARRDSPTYDPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 KDKEEAEAIKHAKALEEEKAMYSGRRSRRQRREFREKRLRGRKISPPSYARRDSPTYDPY
      180       190       200       210       220       230        

              310       320       330       340       350       360
pF1KB4 KRSPSESSSESRSRSRSPTPGREEKITFITSFGGSDEEAAAAAAAAAASGVTTGKPPAPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 KRSPSESSSESRSRSRSPTPGREEKITFITSFGGSDEEAAAAAAAAAASGVTTGKPPAPP
      240       250       260       270       280       290        

              370       380       390       400       410       420
pF1KB4 QPGGPAPGRNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 QPGGPAPGRNASARRRSSSSSSSSSASRTSSSRSSSRSSSRSRRGGGYYRSGRHARSRSR
      300       310       320       330       340       350        

              430       440       450       460       470       480
pF1KB4 SWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSRSPARRGGYGPRRRSRSRSHSGDRYR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 SWSRSRSRSRRYSRSRSRGRRHSGGGSRDGHRYSRSPARRGGYGPRRRSRSRSHSGDRYR
      360       370       380       390       400       410        

              490       500       510       520       530       540
pF1KB4 RGGRGLRHHSSSRSRSSWSLSPSRSRSLTRSRSHSPSPSQSRSRSRSRSQSPSPSPAREK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 RGGRGLRHHSSSRSRSSWSLSPSRSRSLTRSRSHSPSPSQSRSRSRSRSQSPSPSPAREK
      420       430       440       450       460       470        

              550       560       570       580       590       600
pF1KB4 LTRPAASPAVGEKLKKTEPAAGKETGAAKPKLTPQEKLKLRMQKALNRQFKADKKAAQEK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 LTRPAASPAVGEKLKKTEPAAGKETGAAKPKLTPQEKLKLRMQKALNRQFKADKKAAQEK
      480       490       500       510       520       530        

              610       620       630       640       650       660
pF1KB4 MIQQEHERQEREDELRAMARKIRMKERERREKEREEWERQYSRQSRSPSPRYSREYSSSR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS62 MIQQEHERQEREDELRAMARKIRMKERERREKEREEWERQYSRQSRSPSPRYSREYSSSR
      540       550       560       570       580       590        

              670    
pF1KB4 RRSRSRSRSPHYRH
       ::::::::::::::
CCDS62 RRSRSRSRSPHYRH
      600       610  




674 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 15:41:33 2016 done: Thu Nov  3 15:41:34 2016
 Total Scan time:  4.940 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]