FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4945, 312 aa
  1>>>pF1KB4945 312 - 312 aa - 312 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5668+/-0.000904; mu= 14.1273+/- 0.054
 mean_var=63.4353+/-12.776, 0's: 0 Z-trim(105.1): 21  B-trim: 411 in 1/49
 Lambda= 0.161031
 statistics sampled from 8254 (8258) to 8254 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.632), E-opt: 0.2 (0.254), width:  16
 Scan time:  2.330

The best scores are:                                      opt bits E(32554)
CCDS13699.1 PDXK gene_id:8566|Hs108|chr21          ( 312) 2061 487.5 5.7e-138
CCDS82679.1 PDXK gene_id:8566|Hs108|chr21          ( 272) 1756 416.6 1.1e-116


>>CCDS13699.1 PDXK gene_id:8566|Hs108|chr21               (312 aa)
 initn: 2061 init1: 2061 opt: 2061  Z-score: 2590.5  bits: 487.5 E(32554): 5.7e-138
Smith-Waterman score: 2061; 100.0% identity (100.0% similar) in 312 aa overlap (1-312:1-312)

               10        20        30        40        50        60
pF1KB4 MEEECRVLSIQSHVIRGYVGNRAATFPLQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MEEECRVLSIQSHVIRGYVGNRAATFPLQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSD
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 ELQELYEGLRLNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ELQELYEGLRLNNMNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKW
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 DGEGSMYVPEDLLPVYKEKVVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DGEGSMYVPEDLLPVYKEKVVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 DTVVITSSDLPSPQGSNYLIVLGSQRRRNPAGSVVMERIRMDIRKVDAVFVGTGDLFAAM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DTVVITSSDLPSPQGSNYLIVLGSQRRRNPAGSVVMERIRMDIRKVDAVFVGTGDLFAAM
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 LLAWTHKHPNNLKVACEKTVSTLHHVLQRTIQCAKAQAGEGVRPSPMQLELRMVQSKRDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LLAWTHKHPNNLKVACEKTVSTLHHVLQRTIQCAKAQAGEGVRPSPMQLELRMVQSKRDI
              250       260       270       280       290       300

              310  
pF1KB4 EDPEIVVQATVL
       ::::::::::::
CCDS13 EDPEIVVQATVL
              310  

>>CCDS82679.1 PDXK gene_id:8566|Hs108|chr21               (272 aa)
 initn: 1756 init1: 1756 opt: 1756  Z-score: 2208.5  bits: 416.6 E(32554): 1.1e-116
Smith-Waterman score: 1756; 98.9% identity (98.9% similar) in 269 aa overlap (44-312:4-272)

            20        30        40        50        60        70   
pF1KB4 VIRGYVGNRAATFPLQVLGFEIDAVNSVQFSNHTGYAHWKGQVLNSDELQELYEGLRLNN
                                     :   ::::::::::::::::::::::::::
CCDS82                            MGRSRPPGYAHWKGQVLNSDELQELYEGLRLNN
                                          10        20        30   

            80        90       100       110       120       130   
pF1KB4 MNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDGEGSMYVPEDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MNKYDYVLTGYTRDKSFLAMVVDIVQELKQQNPRLVYVCDPVLGDKWDGEGSMYVPEDLL
            40        50        60        70        80        90   

           140       150       160       170       180       190   
pF1KB4 PVYKEKVVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPDTVVITSSDLPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PVYKEKVVPLADIITPNQFEAELLSGRKIHSQEEALRVMDMLHSMGPDTVVITSSDLPSP
           100       110       120       130       140       150   

           200       210       220       230       240       250   
pF1KB4 QGSNYLIVLGSQRRRNPAGSVVMERIRMDIRKVDAVFVGTGDLFAAMLLAWTHKHPNNLK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 QGSNYLIVLGSQRRRNPAGSVVMERIRMDIRKVDAVFVGTGDLFAAMLLAWTHKHPNNLK
           160       170       180       190       200       210   

           260       270       280       290       300       310  
pF1KB4 VACEKTVSTLHHVLQRTIQCAKAQAGEGVRPSPMQLELRMVQSKRDIEDPEIVVQATVL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 VACEKTVSTLHHVLQRTIQCAKAQAGEGVRPSPMQLELRMVQSKRDIEDPEIVVQATVL
           220       230       240       250       260       270  




312 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 06:08:02 2016 done: Sat Nov  5 06:08:02 2016
 Total Scan time:  2.330 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]