Result of FASTA (omim) for
pF1KB4828
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4828, 291 aa
1>>>pF1KB4828 291 - 291 aa - 291 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.1806+/-0.000305; mu= 12.0354+/- 0.019
mean_var=92.9501+/-19.010, 0's: 0 Z-trim(119.2): 75 B-trim: 2716 in 2/56
Lambda= 0.133030
statistics sampled from 32924 (33017) to 32924 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.387), width: 16
Scan time: 4.900
The best scores are: opt bits E(85289)
NP_659458 (OMIM: 613335) E3 ubiquitin-protein liga ( 291) 2010 395.3 7.3e-110
XP_016871383 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 291) 2010 395.3 7.3e-110
XP_011537797 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 291) 2010 395.3 7.3e-110
NP_001002266 (OMIM: 613335) E3 ubiquitin-protein l ( 291) 2010 395.3 7.3e-110
XP_011537794 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 1536 304.5 3.1e-82
XP_011537795 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 1536 304.5 3.1e-82
XP_011537796 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 1536 304.5 3.1e-82
NP_001269795 (OMIM: 613335) E3 ubiquitin-protein l ( 573) 1536 304.5 3.1e-82
XP_005271861 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 1536 304.5 3.1e-82
XP_006717767 (OMIM: 613335) PREDICTED: E3 ubiquiti ( 573) 1536 304.5 3.1e-82
XP_016863825 (OMIM: 613331) PREDICTED: E3 ubiquiti ( 285) 1335 265.7 7.1e-71
XP_016863824 (OMIM: 613331) PREDICTED: E3 ubiquiti ( 285) 1335 265.7 7.1e-71
XP_016863823 (OMIM: 613331) PREDICTED: E3 ubiquiti ( 289) 1246 248.7 1e-65
NP_001159845 (OMIM: 613331) E3 ubiquitin-protein l ( 289) 1246 248.7 1e-65
NP_060393 (OMIM: 613331) E3 ubiquitin-protein liga ( 272) 1190 237.9 1.6e-62
XP_011530357 (OMIM: 613331) PREDICTED: E3 ubiquiti ( 545) 1125 225.6 1.6e-58
XP_016882342 (OMIM: 613332) PREDICTED: E3 ubiquiti ( 246) 322 71.3 2.1e-12
NP_057580 (OMIM: 613332) E3 ubiquitin-protein liga ( 246) 322 71.3 2.1e-12
NP_001005415 (OMIM: 613332) E3 ubiquitin-protein l ( 246) 322 71.3 2.1e-12
XP_011526348 (OMIM: 613332) PREDICTED: E3 ubiquiti ( 256) 305 68.0 2.1e-11
XP_011526349 (OMIM: 613332) PREDICTED: E3 ubiquiti ( 256) 305 68.0 2.1e-11
NP_848545 (OMIM: 613333) E3 ubiquitin-protein liga ( 253) 293 65.7 1e-10
XP_016864504 (OMIM: 613333) PREDICTED: E3 ubiquiti ( 154) 268 60.8 1.9e-09
XP_011541431 (OMIM: 613333) PREDICTED: E3 ubiquiti ( 280) 267 60.8 3.5e-09
XP_011541432 (OMIM: 613333) PREDICTED: E3 ubiquiti ( 280) 267 60.8 3.5e-09
XP_011541433 (OMIM: 613333) PREDICTED: E3 ubiquiti ( 280) 267 60.8 3.5e-09
XP_006722826 (OMIM: 613332) PREDICTED: E3 ubiquiti ( 176) 262 59.7 4.7e-09
NP_001005416 (OMIM: 613332) E3 ubiquitin-protein l ( 176) 262 59.7 4.7e-09
NP_612405 (OMIM: 613336) E3 ubiquitin-protein liga ( 346) 264 60.2 6.3e-09
XP_016864433 (OMIM: 613297) PREDICTED: E3 ubiquiti ( 460) 260 59.5 1.4e-08
NP_065865 (OMIM: 608208) E3 ubiquitin-protein liga ( 410) 259 59.3 1.4e-08
XP_011512238 (OMIM: 613297) PREDICTED: E3 ubiquiti ( 637) 260 59.6 1.8e-08
XP_011512236 (OMIM: 613297) PREDICTED: E3 ubiquiti ( 791) 260 59.7 2.1e-08
NP_005876 (OMIM: 613297) E3 ubiquitin-protein liga ( 910) 260 59.7 2.4e-08
NP_001257589 (OMIM: 613297) E3 ubiquitin-protein l ( 862) 257 59.1 3.4e-08
NP_001096032 (OMIM: 613338) E3 ubiquitin-protein l ( 402) 252 58.0 3.5e-08
XP_005257163 (OMIM: 613337) PREDICTED: probable E3 ( 752) 217 51.4 6.2e-06
NP_001275709 (OMIM: 613337) probable E3 ubiquitin- ( 799) 217 51.4 6.5e-06
XP_005257160 (OMIM: 613337) PREDICTED: probable E3 ( 799) 217 51.4 6.5e-06
XP_011522739 (OMIM: 613337) PREDICTED: probable E3 ( 807) 217 51.4 6.6e-06
NP_689811 (OMIM: 613337) probable E3 ubiquitin-pro ( 808) 217 51.4 6.6e-06
NP_001094345 (OMIM: 613337) probable E3 ubiquitin- ( 808) 217 51.4 6.6e-06
XP_005257159 (OMIM: 613337) PREDICTED: probable E3 ( 824) 217 51.4 6.7e-06
XP_011522738 (OMIM: 613337) PREDICTED: probable E3 ( 825) 217 51.4 6.7e-06
XP_005257157 (OMIM: 613337) PREDICTED: probable E3 ( 825) 217 51.4 6.7e-06
NP_001275708 (OMIM: 613337) probable E3 ubiquitin- ( 846) 217 51.5 6.8e-06
XP_011522737 (OMIM: 613337) PREDICTED: probable E3 ( 862) 217 51.5 6.9e-06
XP_005257155 (OMIM: 613337) PREDICTED: probable E3 ( 862) 217 51.5 6.9e-06
XP_005257152 (OMIM: 613337) PREDICTED: probable E3 ( 863) 217 51.5 6.9e-06
XP_005257153 (OMIM: 613337) PREDICTED: probable E3 ( 863) 217 51.5 6.9e-06
>>NP_659458 (OMIM: 613335) E3 ubiquitin-protein ligase M (291 aa)
initn: 2010 init1: 2010 opt: 2010 Z-score: 2093.4 bits: 395.3 E(85289): 7.3e-110
Smith-Waterman score: 2010; 100.0% identity (100.0% similar) in 291 aa overlap (1-291:1-291)
10 20 30 40 50 60
pF1KB4 MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 PAPVSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 PAPVSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 RCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 RCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 AEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 AEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQN
190 200 210 220 230 240
250 260 270 280 290
pF1KB4 CPETSKKNIFEKSPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGAEIIHV
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_659 CPETSKKNIFEKSPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGAEIIHV
250 260 270 280 290
>>XP_016871383 (OMIM: 613335) PREDICTED: E3 ubiquitin-pr (291 aa)
initn: 2010 init1: 2010 opt: 2010 Z-score: 2093.4 bits: 395.3 E(85289): 7.3e-110
Smith-Waterman score: 2010; 100.0% identity (100.0% similar) in 291 aa overlap (1-291:1-291)
10 20 30 40 50 60
pF1KB4 MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 PAPVSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PAPVSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 RCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 AEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQN
190 200 210 220 230 240
250 260 270 280 290
pF1KB4 CPETSKKNIFEKSPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGAEIIHV
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 CPETSKKNIFEKSPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGAEIIHV
250 260 270 280 290
>>XP_011537797 (OMIM: 613335) PREDICTED: E3 ubiquitin-pr (291 aa)
initn: 2010 init1: 2010 opt: 2010 Z-score: 2093.4 bits: 395.3 E(85289): 7.3e-110
Smith-Waterman score: 2010; 100.0% identity (100.0% similar) in 291 aa overlap (1-291:1-291)
10 20 30 40 50 60
pF1KB4 MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 PAPVSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PAPVSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 RCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 AEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQN
190 200 210 220 230 240
250 260 270 280 290
pF1KB4 CPETSKKNIFEKSPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGAEIIHV
:::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 CPETSKKNIFEKSPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGAEIIHV
250 260 270 280 290
>>NP_001002266 (OMIM: 613335) E3 ubiquitin-protein ligas (291 aa)
initn: 2010 init1: 2010 opt: 2010 Z-score: 2093.4 bits: 395.3 E(85289): 7.3e-110
Smith-Waterman score: 2010; 100.0% identity (100.0% similar) in 291 aa overlap (1-291:1-291)
10 20 30 40 50 60
pF1KB4 MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 PAPVSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PAPVSSFSRTSITPSSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 RCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 AEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AEEIKQGQATGILEWPFWTKLVVVAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQN
190 200 210 220 230 240
250 260 270 280 290
pF1KB4 CPETSKKNIFEKSPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGAEIIHV
:::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 CPETSKKNIFEKSPLTEPNFENKHGYGICHSDTNSSCCTEPEDTGAEIIHV
250 260 270 280 290
>>XP_011537794 (OMIM: 613335) PREDICTED: E3 ubiquitin-pr (573 aa)
initn: 1526 init1: 1526 opt: 1536 Z-score: 1597.4 bits: 304.5 E(85289): 3.1e-82
Smith-Waterman score: 1536; 92.9% identity (94.5% similar) in 238 aa overlap (54-291:343-573)
30 40 50 60 70 80
pF1KB4 SKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASAPAPVSSFSRTSITPSSQDICRIC
:: : . : :.: : .: :.::::
XP_011 FEDSTSAKLKSRVLRAPLCSTEKDSDLDCPSPFSEKLP-PISPVS------TSGDVCRIC
320 330 340 350 360
90 100 110 120 130 140
pF1KB4 HCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLKPLRKWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLKPLRKWE
370 380 390 400 410 420
150 160 170 180 190 200
pF1KB4 KLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGILEWPFWTKLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGILEWPFWTKLVV
430 440 450 460 470 480
210 220 230 240 250 260
pF1KB4 VAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEKSPLTEPNFENK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEKSPLTEPNFENK
490 500 510 520 530 540
270 280 290
pF1KB4 HGYGICHSDTNSSCCTEPEDTGAEIIHV
::::::::::::::::::::::::::::
XP_011 HGYGICHSDTNSSCCTEPEDTGAEIIHV
550 560 570
>--
initn: 547 init1: 515 opt: 527 Z-score: 550.8 bits: 110.8 E(85289): 6.1e-24
Smith-Waterman score: 527; 78.4% identity (86.5% similar) in 111 aa overlap (1-103:1-110)
10 20 30 40 50 60
pF1KB4 MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
10 20 30 40 50 60
70 80 90 100 110
pF1KB4 PAPVSSFSRTSITPSSQDIC-------RICHCEGDDESPLITPC-HCTGSLHFVHQACLQ
:::::::::::::::::::: . :: ... .: ... :: .::
XP_011 PAPVSSFSRTSITPSSQDICSSSAVFSECCH-HSSVQSAVVSKAPHCQSSLTQGLTVTVI
70 80 90 100 110
120 130 140 150 160 170
pF1KB4 QWIKSSDTRCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWS
XP_011 CKDTLQASKRNSFGSEWAQALKPAKNTKARRTLKFSRSLNDVGEKAQDTSESFAYVERTC
120 130 140 150 160 170
>>XP_011537795 (OMIM: 613335) PREDICTED: E3 ubiquitin-pr (573 aa)
initn: 1526 init1: 1526 opt: 1536 Z-score: 1597.4 bits: 304.5 E(85289): 3.1e-82
Smith-Waterman score: 1536; 92.9% identity (94.5% similar) in 238 aa overlap (54-291:343-573)
30 40 50 60 70 80
pF1KB4 SKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASAPAPVSSFSRTSITPSSQDICRIC
:: : . : :.: : .: :.::::
XP_011 FEDSTSAKLKSRVLRAPLCSTEKDSDLDCPSPFSEKLP-PISPVS------TSGDVCRIC
320 330 340 350 360
90 100 110 120 130 140
pF1KB4 HCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLKPLRKWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLKPLRKWE
370 380 390 400 410 420
150 160 170 180 190 200
pF1KB4 KLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGILEWPFWTKLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGILEWPFWTKLVV
430 440 450 460 470 480
210 220 230 240 250 260
pF1KB4 VAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEKSPLTEPNFENK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEKSPLTEPNFENK
490 500 510 520 530 540
270 280 290
pF1KB4 HGYGICHSDTNSSCCTEPEDTGAEIIHV
::::::::::::::::::::::::::::
XP_011 HGYGICHSDTNSSCCTEPEDTGAEIIHV
550 560 570
>--
initn: 547 init1: 515 opt: 527 Z-score: 550.8 bits: 110.8 E(85289): 6.1e-24
Smith-Waterman score: 527; 78.4% identity (86.5% similar) in 111 aa overlap (1-103:1-110)
10 20 30 40 50 60
pF1KB4 MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
10 20 30 40 50 60
70 80 90 100 110
pF1KB4 PAPVSSFSRTSITPSSQDIC-------RICHCEGDDESPLITPC-HCTGSLHFVHQACLQ
:::::::::::::::::::: . :: ... .: ... :: .::
XP_011 PAPVSSFSRTSITPSSQDICSSSAVFSECCH-HSSVQSAVVSKAPHCQSSLTQGLTVTVI
70 80 90 100 110
120 130 140 150 160 170
pF1KB4 QWIKSSDTRCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWS
XP_011 CKDTLQASKRNSFGSEWAQALKPAKNTKARRTLKFSRSLNDVGEKAQDTSESFAYVERTC
120 130 140 150 160 170
>>XP_011537796 (OMIM: 613335) PREDICTED: E3 ubiquitin-pr (573 aa)
initn: 1526 init1: 1526 opt: 1536 Z-score: 1597.4 bits: 304.5 E(85289): 3.1e-82
Smith-Waterman score: 1536; 92.9% identity (94.5% similar) in 238 aa overlap (54-291:343-573)
30 40 50 60 70 80
pF1KB4 SKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASAPAPVSSFSRTSITPSSQDICRIC
:: : . : :.: : .: :.::::
XP_011 FEDSTSAKLKSRVLRAPLCSTEKDSDLDCPSPFSEKLP-PISPVS------TSGDVCRIC
320 330 340 350 360
90 100 110 120 130 140
pF1KB4 HCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLKPLRKWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLKPLRKWE
370 380 390 400 410 420
150 160 170 180 190 200
pF1KB4 KLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGILEWPFWTKLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGILEWPFWTKLVV
430 440 450 460 470 480
210 220 230 240 250 260
pF1KB4 VAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEKSPLTEPNFENK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEKSPLTEPNFENK
490 500 510 520 530 540
270 280 290
pF1KB4 HGYGICHSDTNSSCCTEPEDTGAEIIHV
::::::::::::::::::::::::::::
XP_011 HGYGICHSDTNSSCCTEPEDTGAEIIHV
550 560 570
>--
initn: 547 init1: 515 opt: 527 Z-score: 550.8 bits: 110.8 E(85289): 6.1e-24
Smith-Waterman score: 527; 78.4% identity (86.5% similar) in 111 aa overlap (1-103:1-110)
10 20 30 40 50 60
pF1KB4 MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
10 20 30 40 50 60
70 80 90 100 110
pF1KB4 PAPVSSFSRTSITPSSQDIC-------RICHCEGDDESPLITPC-HCTGSLHFVHQACLQ
:::::::::::::::::::: . :: ... .: ... :: .::
XP_011 PAPVSSFSRTSITPSSQDICSSSAVFSECCH-HSSVQSAVVSKAPHCQSSLTQGLTVTVI
70 80 90 100 110
120 130 140 150 160 170
pF1KB4 QWIKSSDTRCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWS
XP_011 CKDTLQASKRNSFGSEWAQALKPAKNTKARRTLKFSRSLNDVGEKAQDTSESFAYVERTC
120 130 140 150 160 170
>>NP_001269795 (OMIM: 613335) E3 ubiquitin-protein ligas (573 aa)
initn: 1526 init1: 1526 opt: 1536 Z-score: 1597.4 bits: 304.5 E(85289): 3.1e-82
Smith-Waterman score: 1536; 92.9% identity (94.5% similar) in 238 aa overlap (54-291:343-573)
30 40 50 60 70 80
pF1KB4 SKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASAPAPVSSFSRTSITPSSQDICRIC
:: : . : :.: : .: :.::::
NP_001 FEDSTSAKLKSRVLRAPLCSTEKDSDLDCPSPFSEKLP-PISPVS------TSGDVCRIC
320 330 340 350 360
90 100 110 120 130 140
pF1KB4 HCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLKPLRKWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLKPLRKWE
370 380 390 400 410 420
150 160 170 180 190 200
pF1KB4 KLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGILEWPFWTKLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGILEWPFWTKLVV
430 440 450 460 470 480
210 220 230 240 250 260
pF1KB4 VAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEKSPLTEPNFENK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEKSPLTEPNFENK
490 500 510 520 530 540
270 280 290
pF1KB4 HGYGICHSDTNSSCCTEPEDTGAEIIHV
::::::::::::::::::::::::::::
NP_001 HGYGICHSDTNSSCCTEPEDTGAEIIHV
550 560 570
>--
initn: 547 init1: 515 opt: 527 Z-score: 550.8 bits: 110.8 E(85289): 6.1e-24
Smith-Waterman score: 527; 78.4% identity (86.5% similar) in 111 aa overlap (1-103:1-110)
10 20 30 40 50 60
pF1KB4 MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
10 20 30 40 50 60
70 80 90 100 110
pF1KB4 PAPVSSFSRTSITPSSQDIC-------RICHCEGDDESPLITPC-HCTGSLHFVHQACLQ
:::::::::::::::::::: . :: ... .: ... :: .::
NP_001 PAPVSSFSRTSITPSSQDICSSSAVFSECCH-HSSVQSAVVSKAPHCQSSLTQGLTVTVI
70 80 90 100 110
120 130 140 150 160 170
pF1KB4 QWIKSSDTRCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWS
NP_001 CKDTLQASKRNSFGSEWAQALKPAKNTKARRTLKFSRSLNDVGEKAQDTSESFAYVERTC
120 130 140 150 160 170
>>XP_005271861 (OMIM: 613335) PREDICTED: E3 ubiquitin-pr (573 aa)
initn: 1526 init1: 1526 opt: 1536 Z-score: 1597.4 bits: 304.5 E(85289): 3.1e-82
Smith-Waterman score: 1536; 92.9% identity (94.5% similar) in 238 aa overlap (54-291:343-573)
30 40 50 60 70 80
pF1KB4 SKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASAPAPVSSFSRTSITPSSQDICRIC
:: : . : :.: : .: :.::::
XP_005 FEDSTSAKLKSRVLRAPLCSTEKDSDLDCPSPFSEKLP-PISPVS------TSGDVCRIC
320 330 340 350 360
90 100 110 120 130 140
pF1KB4 HCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLKPLRKWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLKPLRKWE
370 380 390 400 410 420
150 160 170 180 190 200
pF1KB4 KLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGILEWPFWTKLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 KLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGILEWPFWTKLVV
430 440 450 460 470 480
210 220 230 240 250 260
pF1KB4 VAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEKSPLTEPNFENK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEKSPLTEPNFENK
490 500 510 520 530 540
270 280 290
pF1KB4 HGYGICHSDTNSSCCTEPEDTGAEIIHV
::::::::::::::::::::::::::::
XP_005 HGYGICHSDTNSSCCTEPEDTGAEIIHV
550 560 570
>--
initn: 547 init1: 515 opt: 527 Z-score: 550.8 bits: 110.8 E(85289): 6.1e-24
Smith-Waterman score: 527; 78.4% identity (86.5% similar) in 111 aa overlap (1-103:1-110)
10 20 30 40 50 60
pF1KB4 MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
10 20 30 40 50 60
70 80 90 100 110
pF1KB4 PAPVSSFSRTSITPSSQDIC-------RICHCEGDDESPLITPC-HCTGSLHFVHQACLQ
:::::::::::::::::::: . :: ... .: ... :: .::
XP_005 PAPVSSFSRTSITPSSQDICSSSAVFSECCH-HSSVQSAVVSKAPHCQSSLTQGLTVTVI
70 80 90 100 110
120 130 140 150 160 170
pF1KB4 QWIKSSDTRCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWS
XP_005 CKDTLQASKRNSFGSEWAQALKPAKNTKARRTLKFSRSLNDVGEKAQDTSESFAYVERTC
120 130 140 150 160 170
>>XP_006717767 (OMIM: 613335) PREDICTED: E3 ubiquitin-pr (573 aa)
initn: 1526 init1: 1526 opt: 1536 Z-score: 1597.4 bits: 304.5 E(85289): 3.1e-82
Smith-Waterman score: 1536; 92.9% identity (94.5% similar) in 238 aa overlap (54-291:343-573)
30 40 50 60 70 80
pF1KB4 SKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASAPAPVSSFSRTSITPSSQDICRIC
:: : . : :.: : .: :.::::
XP_006 FEDSTSAKLKSRVLRAPLCSTEKDSDLDCPSPFSEKLP-PISPVS------TSGDVCRIC
320 330 340 350 360
90 100 110 120 130 140
pF1KB4 HCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLKPLRKWE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 HCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLKPLRKWE
370 380 390 400 410 420
150 160 170 180 190 200
pF1KB4 KLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGILEWPFWTKLVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 KLQMTSSERRKIMCSVTFHVIAITCVVWSLYVLIDRTAEEIKQGQATGILEWPFWTKLVV
430 440 450 460 470 480
210 220 230 240 250 260
pF1KB4 VAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEKSPLTEPNFENK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VAIGFTGGLLFMYVQCKVYVQLWKRLKAYNRVIYVQNCPETSKKNIFEKSPLTEPNFENK
490 500 510 520 530 540
270 280 290
pF1KB4 HGYGICHSDTNSSCCTEPEDTGAEIIHV
::::::::::::::::::::::::::::
XP_006 HGYGICHSDTNSSCCTEPEDTGAEIIHV
550 560 570
>--
initn: 547 init1: 515 opt: 527 Z-score: 550.8 bits: 110.8 E(85289): 6.1e-24
Smith-Waterman score: 527; 78.4% identity (86.5% similar) in 111 aa overlap (1-103:1-110)
10 20 30 40 50 60
pF1KB4 MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MSMPLHQISAIPSQDAISARVYRSKTKEKEREEQNEKTLGHFMSHSSNISKAGSPPSASA
10 20 30 40 50 60
70 80 90 100 110
pF1KB4 PAPVSSFSRTSITPSSQDIC-------RICHCEGDDESPLITPC-HCTGSLHFVHQACLQ
:::::::::::::::::::: . :: ... .: ... :: .::
XP_006 PAPVSSFSRTSITPSSQDICSSSAVFSECCH-HSSVQSAVVSKAPHCQSSLTQGLTVTVI
70 80 90 100 110
120 130 140 150 160 170
pF1KB4 QWIKSSDTRCCELCKYEFIMETKLKPLRKWEKLQMTSSERRKIMCSVTFHVIAITCVVWS
XP_006 CKDTLQASKRNSFGSEWAQALKPAKNTKARRTLKFSRSLNDVGEKAQDTSESFAYVERTC
120 130 140 150 160 170
291 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 06:02:54 2016 done: Sat Nov 5 06:02:55 2016
Total Scan time: 4.900 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]