Result of FASTA (ccds) for
pF1KB4735
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4735, 384 aa
1>>>pF1KB4735 384 - 384 aa - 384 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.1952+/-0.000847; mu= 16.7417+/- 0.051
mean_var=63.9875+/-12.721, 0's: 0 Z-trim(106.6): 23 B-trim: 43 in 1/49
Lambda= 0.160334
statistics sampled from 9047 (9069) to 9047 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.66), E-opt: 0.2 (0.279), width: 16
Scan time: 1.940
The best scores are: opt bits E(32554)
CCDS13984.1 APOBEC3G gene_id:60489|Hs108|chr22 ( 384) 2801 656.7 9.7e-189
CCDS13982.1 APOBEC3B gene_id:9582|Hs108|chr22 ( 382) 1471 349.1 3.9e-96
CCDS33648.1 APOBEC3F gene_id:200316|Hs108|chr22 ( 373) 1258 299.8 2.6e-81
CCDS13981.1 APOBEC3A gene_id:200315|Hs108|chr22 ( 199) 820 198.3 4.9e-51
CCDS58807.1 APOBEC3B gene_id:9582|Hs108|chr22 ( 357) 524 130.0 3.2e-30
CCDS13983.1 APOBEC3C gene_id:27350|Hs108|chr22 ( 190) 513 127.3 1.1e-29
CCDS46709.1 APOBEC3D gene_id:140564|Hs108|chr22 ( 386) 511 127.0 2.8e-29
CCDS41747.1 AICDA gene_id:57379|Hs108|chr12 ( 198) 402 101.7 6.2e-22
CCDS33649.1 APOBEC3F gene_id:200316|Hs108|chr22 ( 101) 397 100.3 7.9e-22
CCDS13985.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 183) 349 89.4 2.9e-18
CCDS54531.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 182) 344 88.2 6.3e-18
CCDS54530.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 200) 344 88.2 6.9e-18
CCDS81662.1 AICDA gene_id:57379|Hs108|chr12 ( 188) 330 85.0 6.1e-17
CCDS8579.1 APOBEC1 gene_id:339|Hs108|chr12 ( 236) 307 79.7 3e-15
CCDS4848.1 APOBEC2 gene_id:10930|Hs108|chr6 ( 224) 294 76.7 2.3e-14
CCDS54532.1 APOBEC3H gene_id:164668|Hs108|chr22 ( 154) 250 66.4 1.9e-11
>>CCDS13984.1 APOBEC3G gene_id:60489|Hs108|chr22 (384 aa)
initn: 2801 init1: 2801 opt: 2801 Z-score: 3502.0 bits: 656.7 E(32554): 9.7e-189
Smith-Waterman score: 2801; 100.0% identity (100.0% similar) in 384 aa overlap (1-384:1-384)
10 20 30 40 50 60
pF1KB4 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 ELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 ARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLPK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 ARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLPK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 YYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRRG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 FLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFIS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 FLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFIS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 KNKHVSLCIFTARIYDDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCPFQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KNKHVSLCIFTARIYDDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCPFQP
310 320 330 340 350 360
370 380
pF1KB4 WDGLDEHSQDLSGRLRAILQNQEN
::::::::::::::::::::::::
CCDS13 WDGLDEHSQDLSGRLRAILQNQEN
370 380
>>CCDS13982.1 APOBEC3B gene_id:9582|Hs108|chr22 (382 aa)
initn: 1336 init1: 572 opt: 1471 Z-score: 1839.4 bits: 349.1 E(32554): 3.9e-96
Smith-Waterman score: 1471; 56.6% identity (75.2% similar) in 387 aa overlap (1-384:1-382)
10 20 30 40 50
pF1KB4 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPPLDAKIFRGQVY
:.:..:: .:::::::: :: :.::: :. .::::::: : : : :. .::::::
CCDS13 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 SELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIF
. .:: :: :. :: .: . ...::..::.:: :. .: ::.: :.:::::
CCDS13 FKPQYHAEMCFLSWFCG-NQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTIS
70 80 90 100 110
120 130 140 150 160 170
pF1KB4 VARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLP
.:::::.:. ::..:: : : : :.: ::.:.:: .:: .:::.. . : :: ..
CCDS13 AARLYYYWERDYRRALCRLSQA--GARVT--IMDYEEFAYCWENFVYNEGQQFMPWYKFD
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB4 KYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRR
. : .:: : ::::. ::: ::::::::.: : :..:::::::::. : ::::..:.
CCDS13 ENYAFLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHM
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB4 GFLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFS--CAQEMAK
:::::.: . . :::::: :::..: .:: : :::: : ::::::: :: :.
CCDS13 GFLCNEAKNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFISWSPCFSWGCAGEVRA
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB4 FISKNKHVSLCIFTARIYDDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCP
:...: :: : ::.::::: . .:.:. : .:::..:::::.::..:::::: .::::
CCDS13 FLQENTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCP
300 310 320 330 340 350
360 370 380
pF1KB4 FQPWDGLDEHSQDLSGRLRAILQNQEN
:::::::.:::: :::::::::::: :
CCDS13 FQPWDGLEEHSQALSGRLRAILQNQGN
360 370 380
>>CCDS33648.1 APOBEC3F gene_id:200316|Hs108|chr22 (373 aa)
initn: 1306 init1: 460 opt: 1258 Z-score: 1573.2 bits: 299.8 E(32554): 2.6e-81
Smith-Waterman score: 1258; 50.8% identity (72.8% similar) in 386 aa overlap (1-380:1-373)
10 20 30 40 50 60
pF1KB4 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYS
::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::::
CCDS33 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVYS
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 ELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFV
. ..: :: :. :: .: . ...::..::.:: :. .: :::: :.::::: .
CCDS33 QPEHHAEMCFLSWFCG-NQLPAYKCFQITWFVSWTPCPDCVAKLAEFLAEHPNVTLTISA
70 80 90 100 110
130 140 150 160 170 180
pF1KB4 ARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLPK
:::::.:. ::..:: : : : : .:::. .:: .:: .::::. . : :: ..
CCDS33 ARLYYYWERDYRRALCRLSQA--GAR--VKIMDDEEFAYCWENFVYSEGQPFMPWYKFDD
120 130 140 150 160 170
190 200 210 220 230
pF1KB4 YYILLHIMLGEILRHSMD---PPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQ
: .:: : ::::. :. : : :.:.: . ::.:..::. .: ... . : .
CCDS33 NYAFLHRTLKEILRNPMEAMYPHIFYFHFKNLRKAYGRNESWLCFTMEVVKHHSPV--SW
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB4 RRGFLCNQA-PHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMA
.:: . ::. :. : ::: :::. . :. . .:.:: .:::::: :: :.:
CCDS33 KRGVFRNQVDPETHC-----HAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVA
240 250 260 270 280
300 310 320 330 340 350
pF1KB4 KFISKNKHVSLCIFTARIYD--DQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQ
.:......:.: :::::.: : :::::.:.. ::.. :: :..::.::..:: ..
CCDS33 EFLARHSNVNLTIFTARLYYFWDTDY-QEGLRSLSQEGASVEIMGYKDFKYCWENFVYND
290 300 310 320 330 340
360 370 380
pF1KB4 GCPFQPWDGLDEHSQDLSGRLRAILQNQEN
::.:: :: . :...:. ::.
CCDS33 DEPFKPWKGLKYNFLFLDSKLQEILE
350 360 370
>>CCDS13981.1 APOBEC3A gene_id:200315|Hs108|chr22 (199 aa)
initn: 828 init1: 471 opt: 820 Z-score: 1029.8 bits: 198.3 E(32554): 4.9e-51
Smith-Waterman score: 820; 65.3% identity (77.2% similar) in 193 aa overlap (194-384:10-199)
170 180 190 200 210 220
pF1KB4 FVYSQRELFEPWNNLPKYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYE
:: ::: :: :::: :::.::::::
CCDS13 MEASPASGPRHLMDPHIFTSNFNNGI---GRHKTYLCYE
10 20 30
230 240 250 260 270 280
pF1KB4 VERMHNDTWVLLNQRRGFLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFT
:::. : : : ..:.:::: ::: . . :::::: :::..: .:: : :::: :
CCDS13 VERLDNGTSVKMDQHRGFLHNQAKNLLCGFYGRHAELRFLDLVPSLQLDPAQIYRVTWFI
40 50 60 70 80 90
290 300 310 320 330 340
pF1KB4 SWSPCFS--CAQEMAKFISKNKHVSLCIFTARIYDDQGRCQEGLRTLAEAGAKISIMTYS
::::::: :: :. :...: :: : ::.::::: . .:.:. : .:::..:::::.
CCDS13 SWSPCFSWGCAGEVRAFLQENTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYD
100 110 120 130 140 150
350 360 370 380
pF1KB4 EFKHCWDTFVDHQGCPFQPWDGLDEHSQDLSGRLRAILQNQEN
:::::::::::::::::::::::::::: :::::::::::: :
CCDS13 EFKHCWDTFVDHQGCPFQPWDGLDEHSQALSGRLRAILQNQGN
160 170 180 190
>>CCDS58807.1 APOBEC3B gene_id:9582|Hs108|chr22 (357 aa)
initn: 1252 init1: 431 opt: 524 Z-score: 655.9 bits: 130.0 E(32554): 3.2e-30
Smith-Waterman score: 1350; 53.7% identity (71.1% similar) in 387 aa overlap (1-384:1-357)
10 20 30 40 50
pF1KB4 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPPLDAKIFRGQVY
:.:..:: .:::::::: :: :.::: :. .::::::: : : : :. .::::::
CCDS58 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGQVY
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 SELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIF
. .:: :: :. :: .: . ...::..::.:: :. .: ::.: :.:::::
CCDS58 FKPQYHAEMCFLSWFCG-NQLPAYKCFQITWFVSWTPCPDCVAKLAEFLSEHPNVTLTIS
70 80 90 100 110
120 130 140 150 160 170
pF1KB4 VARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLP
.:::::.:. ::..:: : : : :.: ::.:.:: .:: .:::.. . : :: ..
CCDS58 AARLYYYWERDYRRALCRLSQA--GARVT--IMDYEEFAYCWENFVYNEGQQFMPWYKFD
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB4 KYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRR
. : .:: : ::::. ::: ::::::::.: : :..:::::::::. : ::::..:.
CCDS58 ENYAFLHRTLKEILRYLMDPDTFTFNFNNDPLVLRRRQTYLCYEVERLDNGTWVLMDQHM
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB4 GFLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFS--CAQEMAK
:::::. :: : :::: : ::::::: :: :.
CCDS58 GFLCNE-------------------------LDPAQIYRVTWFISWSPCFSWGCAGEVRA
240 250 260 270
300 310 320 330 340 350
pF1KB4 FISKNKHVSLCIFTARIYDDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCP
:...: :: : ::.::::: . .:.:. : .:::..:::::.::..:::::: .::::
CCDS58 FLQENTHVRLRIFAARIYDYDPLYKEALQMLRDAGAQVSIMTYDEFEYCWDTFVYRQGCP
280 290 300 310 320 330
360 370 380
pF1KB4 FQPWDGLDEHSQDLSGRLRAILQNQEN
:::::::.:::: :::::::::::: :
CCDS58 FQPWDGLEEHSQALSGRLRAILQNQGN
340 350
>>CCDS13983.1 APOBEC3C gene_id:27350|Hs108|chr22 (190 aa)
initn: 478 init1: 275 opt: 513 Z-score: 646.3 bits: 127.3 E(32554): 1.1e-29
Smith-Waterman score: 513; 43.6% identity (67.2% similar) in 195 aa overlap (1-194:1-190)
10 20 30 40 50
pF1KB4 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVK-TKGPSRPPLDAKIFRGQVY
:.:..:: .. :: :: ..: : . :: .:::. :. : : . .::.::
CCDS13 MNPQIRNPMKAMYPGTFYFQFKNLWEANDRNETWLCFTVEGIKRRSVVSWKTGVFRNQVD
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 SELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIF
:: . : : :. :: : . .:.:::: ::::: :. ..: :::. .:.::::
CCDS13 SETHCHAERCFLSWFCD-DILSPNTKYQVTWYTSWSPCPDCAGEVAEFLARHSNVNLTIF
70 80 90 100 110
120 130 140 150 160 170
pF1KB4 VARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLP
.:::::: : :::.:::: : .: ....::.:..:..:: .:::.. : :.::..:
CCDS13 TARLYYFQYPCYQEGLRSLSQ--EG--VAVEIMDYEDFKYCWENFVYNDNEPFKPWKGLK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB4 KYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRR
. ::. : : :.
CCDS13 TNFRLLKRRLRESLQ
180 190
>>CCDS46709.1 APOBEC3D gene_id:140564|Hs108|chr22 (386 aa)
initn: 845 init1: 296 opt: 511 Z-score: 639.2 bits: 127.0 E(32554): 2.8e-29
Smith-Waterman score: 531; 40.2% identity (65.9% similar) in 229 aa overlap (157-380:165-386)
130 140 150 160 170 180
pF1KB4 WDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYSQRELFEPWNNLPKYYILLH
: .:: .:: .. . : :: .. : ::
CCDS46 LYYYRDRDWRWVLLRLHKAGARVKIMDYEDFAYCWENFVCNEGQPFMPWYKFDDNYASLH
140 150 160 170 180 190
190 200 210 220 230 240
pF1KB4 IMLGEILRHSMD---PPTFTFNFNNEPWVRGRHETYLCYEVERMHNDTWVLLNQRRGFLC
: ::::. :. : : :.:.: . ::.:..::. .: .. . :. ..:: .
CCDS46 RTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTMEVTKHHSAVF--RKRGVFR
200 210 220 230 240 250
250 260 270 280 290 300
pF1KB4 NQA-PHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPCFSCAQEMAKFISKN
::. :. : ::: :::. . :. . .:.:: .:::::: :: :.:.:....
CCDS46 NQVDPETHC-----HAERCFLSWFCDDILSPNTNYEVTWYTSWSPCPECAGEVAEFLARH
260 270 280 290 300
310 320 330 340 350 360
pF1KB4 KHVSLCIFTARI-YDDQGRCQEGLRTLAEAGAKISIMTYSEFKHCWDTFVDHQGCPFQPW
..:.: :::::. : . :::: .:.. ::...:: :..: :: .:: . ::.::
CCDS46 SNVNLTIFTARLCYFWDTDYQEGLCSLSQEGASVKIMGYKDFVSCWKNFVYSDDEPFKPW
310 320 330 340 350 360
370 380
pF1KB4 DGLDEHSQDLSGRLRAILQNQEN
::. . . :. ::: :::
CCDS46 KGLQTNFRLLKRRLREILQ
370 380
>--
initn: 394 init1: 187 opt: 443 Z-score: 554.2 bits: 111.3 E(32554): 1.5e-24
Smith-Waterman score: 443; 44.4% identity (66.9% similar) in 169 aa overlap (1-156:1-164)
10 20 30 40 50
pF1KB4 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTK-GPSRPPLDAKIFRG---
:.:..:: .:::::::: :: :.::: :. .::::::: : : : :. .:::
CCDS46 MNPQIRNPMERMYRDTFYDNFENEPILYGRSYTWLCYEVKIKRGRSNLLWDTGVFRGPVL
10 20 30 40 50 60
60 70 80 90 100
pF1KB4 ---------QVYSELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATF
.:: ... : :: :. :: : : ......::..::.:: :. .. :
CCDS46 PKRQSNHRQEVYFRFENHAEMCFLSWFCGNR-LPANRRFQITWFVSWNPCLPCVVKVTKF
70 80 90 100 110
110 120 130 140 150 160
pF1KB4 LAEDPKVTLTIFVARLYYFWDPDYQEALRSLCQKRDGPRATMKIMNYDEFQHCWSKFVYS
::: :.::::: .:::::. : :.. .: : .. : : .:::.:..
CCDS46 LAEHPNVTLTISAARLYYYRDRDWRWVLLRL--HKAGAR--VKIMDYEDFAYCWENFVCN
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB4 QRELFEPWNNLPKYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVERM
CCDS46 EGQPFMPWYKFDDNYASLHRTLKEILRNPMEAMYPHIFYFHFKNLLKACGRNESWLCFTM
180 190 200 210 220 230
>>CCDS41747.1 AICDA gene_id:57379|Hs108|chr12 (198 aa)
initn: 459 init1: 207 opt: 402 Z-score: 507.2 bits: 101.7 E(32554): 6.2e-22
Smith-Waterman score: 491; 44.3% identity (68.6% similar) in 185 aa overlap (197-379:6-180)
170 180 190 200 210 220
pF1KB4 SQRELFEPWNNLPKYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRHETYLCYEVER
:. : ..:.: :..::.:::::: :.:
CCDS41 MDSLLMNRRKFLYQFKNVRWAKGRRETYLCYVVKR
10 20 30
230 240 250 260 270 280
pF1KB4 MHNDTWVLLNQRRGFLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWS
:. . .. :.: :. .: :.:: :: : : :: . :::: :::::
CCDS41 --RDSATSFSLDFGYLRNK--------NGCHVELLFLRYISDWDLDPGRCYRVTWFTSWS
40 50 60 70 80
290 300 310 320 330 340
pF1KB4 PCFSCAQEMAKFISKNKHVSLCIFTARIY--DDQGRCQEGLRTLAEAGAKISIMTYSEFK
::..::...: :. : ..:: :::::.: .:. :::: : .::..:.:::....
CCDS41 PCYDCARHVADFLRGNPNLSLRIFTARLYFCEDRKAEPEGLRRLHRAGVQIAIMTFKDYF
90 100 110 120 130 140
350 360 370 380
pF1KB4 HCWDTFVDHQGCPFQPWDGLDEHSQDLSGRLRAILQNQEN
.::.:::... :. :.:: :.: :: .:: ::
CCDS41 YCWNTFVENHERTFKAWEGLHENSVRLSRQLRRILLPLYEVDDLRDAFRTLGL
150 160 170 180 190
>>CCDS33649.1 APOBEC3F gene_id:200316|Hs108|chr22 (101 aa)
initn: 397 init1: 397 opt: 397 Z-score: 505.4 bits: 100.3 E(32554): 7.9e-22
Smith-Waterman score: 397; 98.3% identity (98.3% similar) in 58 aa overlap (1-58:1-58)
10 20 30 40 50 60
pF1KB4 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPPLDAKIFRGQVYS
::::::::::::::::::::::::::::::::::::::::::::::: ::::::::::
CCDS33 MKPHFRNTVERMYRDTFSYNFYNRPILSRRNTVWLCYEVKTKGPSRPRLDAKIFRGQVPR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 ELKYHPEMRFFHWFSKWRKLHRDQEYEVTWYISWSPCTKCTRDMATFLAEDPKVTLTIFV
CCDS33 SFIRAPFQVLSSPFGQCAPPHGTAQVQWPPQLTAGREQGRP
70 80 90 100
>>CCDS13985.1 APOBEC3H gene_id:164668|Hs108|chr22 (183 aa)
initn: 352 init1: 219 opt: 349 Z-score: 441.5 bits: 89.4 E(32554): 2.9e-18
Smith-Waterman score: 363; 33.9% identity (60.8% similar) in 189 aa overlap (201-381:8-183)
180 190 200 210 220
pF1KB4 LFEPWNNLPKYYILLHIMLGEILRHSMDPPTFTFNFNNEPWVRGRH---ETYLCYEVERM
:: ..:::. .: . .. :::.. .
CCDS13 MALLTAETFRLQFNNKRRLRRPYYPRKALLCYQLTPQ
10 20 30
230 240 250 260 270 280
pF1KB4 HNDTWVLLNQRRGFLCNQAPHKHGFLEGRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSP
...: ::.. :. :::.::.. : :: : :.:::. .:::
CCDS13 NGST-----PTRGYFENKKKC--------HAEICFINEIKSMGLDETQCYQVTCYLTWSP
40 50 60 70 80
290 300 310 320 330 340
pF1KB4 CFSCAQEMAKFISKNKHVSLCIFTARIYDDQGRCQE-GLRTLAEAGAKISIMTYSEFKHC
: ::: :.. ::. . :..: ::..:.: . :. ::: : . . . .: . :: :
CCDS13 CSSCAWELVDFIKAHDHLNLGIFASRLYYHWCKPQQKGLRLLCGSQVPVEVMGFPEFADC
90 100 110 120 130 140
350 360 370 380
pF1KB4 WDTFVDHQG----CPFQPWDGLDEHSQDLSGRLRAILQNQEN
:..::::. :.. . ::..:. .. ::. : :.
CCDS13 WENFVDHEKPLSFNPYKMLEELDKNSRAIKRRLERIKQS
150 160 170 180
384 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:12:07 2016 done: Fri Nov 4 03:12:07 2016
Total Scan time: 1.940 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]