Result of FASTA (ccds) for
pF1KB4718
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4718, 211 aa
1>>>pF1KB4718 211 - 211 aa - 211 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3177+/-0.000792; mu= 13.1161+/- 0.048
mean_var=62.4779+/-12.546, 0's: 0 Z-trim(108.1): 19 B-trim: 288 in 1/49
Lambda= 0.162260
statistics sampled from 10017 (10023) to 10017 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.695), E-opt: 0.2 (0.308), width: 16
Scan time: 1.870
The best scores are: opt bits E(32554)
CCDS13911.1 TIMP3 gene_id:7078|Hs108|chr22 ( 211) 1527 365.7 1.2e-101
CCDS2608.1 TIMP4 gene_id:7079|Hs108|chr3 ( 224) 706 173.5 8.9e-44
CCDS11758.1 TIMP2 gene_id:7077|Hs108|chr17 ( 220) 686 168.8 2.3e-42
CCDS14281.1 TIMP1 gene_id:7076|Hs108|chrX ( 207) 528 131.8 2.9e-31
>>CCDS13911.1 TIMP3 gene_id:7078|Hs108|chr22 (211 aa)
initn: 1527 init1: 1527 opt: 1527 Z-score: 1938.4 bits: 365.7 E(32554): 1.2e-101
Smith-Waterman score: 1527; 100.0% identity (100.0% similar) in 211 aa overlap (1-211:1-211)
10 20 30 40 50 60
pF1KB4 MTPWLGLIVLLGSWSLGDWGAEACTCSPSHPQDAFCNSDIVIRAKVVGKKLVKEGPFGTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MTPWLGLIVLLGSWSLGDWGAEACTCSPSHPQDAFCNSDIVIRAKVVGKKLVKEGPFGTL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 VYTIKQMKMYRGFTKMPHVQYIHTEASESLCGLKLEVNKYQYLLTGRVYDGKMYTGLCNF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VYTIKQMKMYRGFTKMPHVQYIHTEASESLCGLKLEVNKYQYLLTGRVYDGKMYTGLCNF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 VERWDQLTLSQRKGLNYRYHLGCNCKIKSCYYLPCFVTSKNECLWTDMLSNFGYPGYQSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 VERWDQLTLSQRKGLNYRYHLGCNCKIKSCYYLPCFVTSKNECLWTDMLSNFGYPGYQSK
130 140 150 160 170 180
190 200 210
pF1KB4 HYACIRQKGGYCSWYRGWAPPDKSIINATDP
:::::::::::::::::::::::::::::::
CCDS13 HYACIRQKGGYCSWYRGWAPPDKSIINATDP
190 200 210
>>CCDS2608.1 TIMP4 gene_id:7079|Hs108|chr3 (224 aa)
initn: 688 init1: 392 opt: 706 Z-score: 899.4 bits: 173.5 E(32554): 8.9e-44
Smith-Waterman score: 706; 47.4% identity (73.5% similar) in 215 aa overlap (4-211:11-224)
10 20 30 40 50
pF1KB4 MTPWLGLIVLLGSWSLGDWGAEACTCSPSHPQDAFCNSDIVIRAKVVGKKLVK
:. :. ::. : :::.:.:.:::. .:.: .:::::. ..:.:
CCDS26 MPGSPRPAPSWVLLLRLLALLRPPGLG-EACSCAPAHPQQHICHSALVIRAKISSEKVVP
10 20 30 40 50
60 70 80 90 100
pF1KB4 EG--PFGT---LVYTIKQMKMYRGFTKMPHVQYIHTEASESLCGLKLEVN-KYQYLLTGR
. : : : : :::.::..:: :. ::::.: . ::::.:::.: . ::::::.
CCDS26 ASADPADTEKMLRYEIKQIKMFKGFEKVKDVQYIYTPFDSSLCGVKLEANSQKQYLLTGQ
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB4 VY-DGKMYTGLCNFVERWDQLTLSQRKGLNYRYHLGCNCKIKSCYYLPCFVTSKNECLWT
: :::.. :::..: :..:.: ::..::..:::.:.:.: .:: .:: ... ::::::
CCDS26 VLSDGKVFIHLCNYIEPWEDLSLVQRESLNHHYHLNCGCQITTCYTVPCTISAPNECLWT
120 130 140 150 160 170
170 180 190 200 210
pF1KB4 DMLSNFGYPGYQSKHYACIRQKGGYCSWYRGWAPPDKSIINATDP
: : . :::..::.:... : :::::: : : ... ..:
CCDS26 DWLLERKLYGYQAQHYVCMKHVDGTCSWYRGHLPLRKEFVDIVQP
180 190 200 210 220
>>CCDS11758.1 TIMP2 gene_id:7077|Hs108|chr17 (220 aa)
initn: 616 init1: 456 opt: 686 Z-score: 874.2 bits: 168.8 E(32554): 2.3e-42
Smith-Waterman score: 686; 45.2% identity (75.4% similar) in 199 aa overlap (21-211:24-220)
10 20 30 40 50
pF1KB4 MTPWLGLIVLLGSWSLGDWGAEACTCSPSHPQDAFCNSDIVIRAKVVGKKLVKEG--
:.::.::: :::.::::.:.:::::.:..: : :
CCDS11 MGAAARTLRLALGLLLLATLLRPADACSCSPVHPQQAFCNADVVIRAKAVSEKEVDSGND
10 20 30 40 50 60
60 70 80 90 100
pF1KB4 ----PFGTLVYTIKQMKMYRGFTKMPHVQYIHTEASESLCGLKLEVN-KYQYLLTGRVY-
:. . : :::.::..: : ...:.: : ..::..:.:. : .::..:..
CCDS11 IYGNPIKRIQYEIKQIKMFKGPEK--DIEFIYTAPSSAVCGVSLDVGGKKEYLIAGKAEG
70 80 90 100 110
110 120 130 140 150 160
pF1KB4 DGKMYTGLCNFVERWDQLTLSQRKGLNYRYHLGCNCKIKSCYYLPCFVTSKNECLWTDML
::::. ::.:. :: :. .:.:.::.::..::.::: : ..::...: .:::: : .
CCDS11 DGKMHITLCDFIVPWDTLSTTQKKSLNHRYQMGCECKITRCPMIPCYISSPDECLWMDWV
120 130 140 150 160 170
170 180 190 200 210
pF1KB4 SNFGYPGYQSKHYACIRQKGGYCSWYRGWAPPDKSIINATDP
.. . :.:.: .:::... : :.:::: ::: . ... ::
CCDS11 TEKNINGHQAKFFACIKRSDGSCAWYRGAAPPKQEFLDIEDP
180 190 200 210 220
>>CCDS14281.1 TIMP1 gene_id:7076|Hs108|chrX (207 aa)
initn: 512 init1: 160 opt: 528 Z-score: 674.7 bits: 131.8 E(32554): 2.9e-31
Smith-Waterman score: 528; 38.6% identity (65.8% similar) in 202 aa overlap (1-194:1-199)
10 20 30 40 50
pF1KB4 MTPWLGLI--VLLGSWSLGDWGAEACTCSPSHPQDAFCNSDIVIRAKVVGKKLVKEGPFG
:.:. : .:: : .. ..:::: : ::: ::::::.::::: :: :.. .
CCDS14 MAPFEPLASGILLLLWLIAP--SRACTCVPPHPQTAFCNSDLVIRAKFVGTPEVNQTTLY
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 TLVYTIKQMKMYRGFTKM---PHVQYIHTEASESLCGL--KLEVNKYQYLLTGRVYDGKM
: ::. :::.:: . .....: : ::.:: . . . ..:..:.. :: .
CCDS14 QR-YEIKMTKMYKGFQALGDAADIRFVYTPAMESVCGYFHRSHNRSEEFLIAGKLQDGLL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB4 YTGLCNFVERWDQLTLSQRKGLNYRYHLGCN-CKIKSCYYLPCFVTSKNECLWTDMLSNF
. :.:: :..:.:.::.:.. : .::. : . : .:: . : ..:::::.: .
CCDS14 HITTCSFVAPWNSLSLAQRRGFTKTYTVGCEECTVFPCLSIPCKLQSGTHCLWTDQLLQG
120 130 140 150 160 170
180 190 200 210
pF1KB4 GYPGYQSKHYACIRQKGGYCSWYRGWAPPDKSIINATDP
. :.::.: ::. .. : :.:
CCDS14 SEKGFQSRHLACLPREPGLCTWQSLRSQIA
180 190 200
211 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:11:35 2016 done: Fri Nov 4 03:11:35 2016
Total Scan time: 1.870 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]