Result of FASTA (ccds) for
pF1KB4689
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4689, 440 aa
1>>>pF1KB4689 440 - 440 aa - 440 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 9.5373+/-0.000942; mu= 0.9929+/- 0.057
mean_var=300.5309+/-61.990, 0's: 0 Z-trim(115.0): 23 B-trim: 159 in 1/54
Lambda= 0.073983
statistics sampled from 15526 (15541) to 15526 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.774), E-opt: 0.2 (0.477), width: 16
Scan time: 2.170
The best scores are: opt bits E(32554)
CCDS6668.1 HNRNPK gene_id:3190|Hs108|chr9 ( 464) 2340 262.9 4.7e-70
CCDS6667.1 HNRNPK gene_id:3190|Hs108|chr9 ( 463) 2301 258.8 8.4e-69
>>CCDS6668.1 HNRNPK gene_id:3190|Hs108|chr9 (464 aa)
initn: 3018 init1: 2340 opt: 2340 Z-score: 1371.2 bits: 262.9 E(32554): 4.7e-70
Smith-Waterman score: 2974; 94.8% identity (94.8% similar) in 464 aa overlap (1-440:1-464)
10 20 30 40 50 60
pF1KB4 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
10 20 30 40 50 60
70 80 90 100 110
pF1KB4 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEE----------
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
70 80 90 100 110 120
120 130 140 150
pF1KB4 --------------YQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL
::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB4 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB4 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB4 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB4 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS
370 380 390 400 410 420
400 410 420 430 440
pF1KB4 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF
::::::::::::::::::::::::::::::::::::::::::::
CCDS66 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF
430 440 450 460
>>CCDS6667.1 HNRNPK gene_id:3190|Hs108|chr9 (463 aa)
initn: 3057 init1: 2301 opt: 2301 Z-score: 1348.7 bits: 258.8 E(32554): 8.4e-69
Smith-Waterman score: 2935; 94.6% identity (94.8% similar) in 459 aa overlap (1-435:1-459)
10 20 30 40 50 60
pF1KB4 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 METEQPEETFPNTETNGEFGKRPAEDMEEEQAFKRSRNTDEMVELRILLQSKNAGAVIGK
10 20 30 40 50 60
70 80 90 100 110
pF1KB4 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEE----------
::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GGKNIKALRTDYNASVSVPDSSGPERILSISADIETIGEILKKIIPTLEEGLQLPSPTAT
70 80 90 100 110 120
120 130 140 150
pF1KB4 --------------YQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL
::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 SQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKL
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB4 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 FQECCPHSTDRVVLIGGKPDRVVECIKIILDLISESPIKGRAQPYDPNFYDETYDYGGFT
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB4 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MMFDDRRGRPVGFPMRGRGGFDRMPPGRGGRPMPPSRRDYDDMSPRRGPPPPPPGRGGRG
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB4 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GSRARNLPLPPPPPPRGGDLMAYDRRGRPGDRYDGMVGFSADETWDSAIDTWSPSEWQMA
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB4 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 YEPQGGSGYDYSYAGGRGSYGDLGGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGAS
370 380 390 400 410 420
400 410 420 430 440
pF1KB4 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYADVEGF
::::::::::::::::::::::::::::::::::::::.
CCDS66 IKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSVKQYSGKFF
430 440 450 460
440 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 15:22:22 2016 done: Thu Nov 3 15:22:22 2016
Total Scan time: 2.170 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]