FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4671, 312 aa
  1>>>pF1KB4671 312 - 312 aa - 312 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3006+/-0.000805; mu= 14.6934+/- 0.048
 mean_var=54.5715+/-10.806, 0's: 0 Z-trim(105.9): 35  B-trim: 0 in 0/48
 Lambda= 0.173617
 statistics sampled from 8642 (8657) to 8642 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.65), E-opt: 0.2 (0.266), width:  16
 Scan time:  2.560

The best scores are:                                      opt bits E(32554)
CCDS2630.1 OXNAD1 gene_id:92106|Hs108|chr3         ( 312) 2050 521.5 3.3e-148


>>CCDS2630.1 OXNAD1 gene_id:92106|Hs108|chr3              (312 aa)
 initn: 2050 init1: 2050 opt: 2050  Z-score: 2774.3  bits: 521.5 E(32554): 3.3e-148
Smith-Waterman score: 2050; 99.7% identity (99.7% similar) in 312 aa overlap (1-312:1-312)

               10        20        30        40        50        60
pF1KB4 MACAAVMIPGLLRCSVGAIRIEAASLRLTLSTLRHLTLTSIMKSKRKTDHMERTASVLRR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 MACAAVMIPGLLRCSVGAIRIEAASLRLTLSTLRHLTLTSIMKSKRKTDHMERTASVLRR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 EIVSAAKVCGAASESPSVKSLCLLVADQDFSFKAGQWVDFFIPGVSVVGGFSICSSPRLL
       ::::::::::::::::::::: ::::::::::::::::::::::::::::::::::::::
CCDS26 EIVSAAKVCGAASESPSVKSLRLLVADQDFSFKAGQWVDFFIPGVSVVGGFSICSSPRLL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 EQERVIELAVKYTNHPPALWVHNTCTLDCEVAVRVGGEFFFDPQPADASRNLVLIAGGVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 EQERVIELAVKYTNHPPALWVHNTCTLDCEVAVRVGGEFFFDPQPADASRNLVLIAGGVG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 INPLLSILRHAADLLREQANKRNGYEIGTIKLFYSAKNTSELLFKKNILDLVNEFPEKIA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 INPLLSILRHAADLLREQANKRNGYEIGTIKLFYSAKNTSELLFKKNILDLVNEFPEKIA
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 CSLHVTKQTTQINAELKPYITEGRITEKEIRDHISKETLFYICGPPPMTDFFSKQLENNH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS26 CSLHVTKQTTQINAELKPYITEGRITEKEIRDHISKETLFYICGPPPMTDFFSKQLENNH
              250       260       270       280       290       300

              310  
pF1KB4 VPKEHICFEKWW
       ::::::::::::
CCDS26 VPKEHICFEKWW
              310  




312 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:58:44 2016 done: Sat Nov  5 05:58:45 2016
 Total Scan time:  2.560 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]