FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4651, 278 aa
  1>>>pF1KB4651 278 - 278 aa - 278 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0228+/-0.000859; mu= 16.9283+/- 0.051
 mean_var=69.3349+/-13.904, 0's: 0 Z-trim(107.2): 28  B-trim: 0 in 0/51
 Lambda= 0.154027
 statistics sampled from 9413 (9436) to 9413 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.29), width:  16
 Scan time:  1.970

The best scores are:                                      opt bits E(32554)
CCDS7420.1 MARCH5 gene_id:54708|Hs108|chr10        ( 278) 1906 432.4 1.8e-121


>>CCDS7420.1 MARCH5 gene_id:54708|Hs108|chr10             (278 aa)
 initn: 1906 init1: 1906 opt: 1906  Z-score: 2294.4  bits: 432.4 E(32554): 1.8e-121
Smith-Waterman score: 1906; 100.0% identity (100.0% similar) in 278 aa overlap (1-278:1-278)

               10        20        30        40        50        60
pF1KB4 MPDQALQQMLDRSCWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 MPDQALQQMLDRSCWVCFATDEDDRTAEWVRPCRCRGSTKWVHQACLQRWVDEKQRGNST
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 ARVACPQCNAEYLIVFPKLGPVVYVLDLADRLISKACPFAAAGIMVGSIYWTAVTYGAVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 ARVACPQCNAEYLIVFPKLGPVVYVLDLADRLISKACPFAAAGIMVGSIYWTAVTYGAVT
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 VMQVVGHKEGLDVMERADPLFLLIGLPTIPVMLILGKMIRWEDYVLRLWRKYSNKLQILN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 VMQVVGHKEGLDVMERADPLFLLIGLPTIPVMLILGKMIRWEDYVLRLWRKYSNKLQILN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 SIFPGIGCPVPRIPAEANPLADHVSATRILCGALVFPTIATIVGKLMFSSVNSNLQRTIL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS74 SIFPGIGCPVPRIPAEANPLADHVSATRILCGALVFPTIATIVGKLMFSSVNSNLQRTIL
              190       200       210       220       230       240

              250       260       270        
pF1KB4 GGIAFVAIKGAFKVYFKQQQYLRQAHRKILNYPEQEEA
       ::::::::::::::::::::::::::::::::::::::
CCDS74 GGIAFVAIKGAFKVYFKQQQYLRQAHRKILNYPEQEEA
              250       260       270        




278 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:57:06 2016 done: Sat Nov  5 05:57:07 2016
 Total Scan time:  1.970 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]