FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4616, 344 aa
  1>>>pF1KB4616 344 - 344 aa - 344 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.7547+/-0.000457; mu= -7.5843+/- 0.029
 mean_var=446.2109+/-88.697, 0's: 0 Z-trim(121.0): 17  B-trim: 0 in 0/59
 Lambda= 0.060716
 statistics sampled from 36869 (36891) to 36869 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.752), E-opt: 0.2 (0.433), width:  16
 Scan time:  9.250

The best scores are:                                      opt bits E(85289)
NP_060053 (OMIM: 612298,617142) tripartite motif-c ( 344) 2274 213.2 6.5e-55
XP_006718317 (OMIM: 612298,617142) PREDICTED: trip ( 264) 1676 160.7 3.2e-39


>>NP_060053 (OMIM: 612298,617142) tripartite motif-conta  (344 aa)
 initn: 2274 init1: 2274 opt: 2274  Z-score: 1106.9  bits: 213.2 E(85289): 6.5e-55
Smith-Waterman score: 2274; 100.0% identity (100.0% similar) in 344 aa overlap (1-344:1-344)

               10        20        30        40        50        60
pF1KB4 MASGVGAAFEELPHDGTCDECEPDEAPGAEEVCRECGFCYCRRHAEAHRQKFLSHHLAEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 MASGVGAAFEELPHDGTCDECEPDEAPGAEEVCRECGFCYCRRHAEAHRQKFLSHHLAEY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 VHGSQAWTPPADGEGAGKEEAEVKVEQEREIESEAGEESESEEESESEEESETEEESEDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 VHGSQAWTPPADGEGAGKEEAEVKVEQEREIESEAGEESESEEESESEEESETEEESEDE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 SDEESEEDSEEEMEDEQESEAEEDNQEEGESEAEGETEAESEFDPEIEMEAERVAKRKCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 SDEESEEDSEEEMEDEQESEAEEDNQEEGESEAEGETEAESEFDPEIEMEAERVAKRKCP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 DHGLDLSTYCQEDRQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIELVER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 DHGLDLSTYCQEDRQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIELVER
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 LKFKSSDPKVTRDQMKMFIQQEFKKVQKVIADEEQKALHLVDIQEAMATAHVTEILADIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_060 LKFKSSDPKVTRDQMKMFIQQEFKKVQKVIADEEQKALHLVDIQEAMATAHVTEILADIQ
              250       260       270       280       290       300

              310       320       330       340    
pF1KB4 SHMDRLMTQMAQAKEQLDTSNESAEPKAEGDEEGPSGASEEEDT
       ::::::::::::::::::::::::::::::::::::::::::::
NP_060 SHMDRLMTQMAQAKEQLDTSNESAEPKAEGDEEGPSGASEEEDT
              310       320       330       340    

>>XP_006718317 (OMIM: 612298,617142) PREDICTED: triparti  (264 aa)
 initn: 1676 init1: 1676 opt: 1676  Z-score: 825.2  bits: 160.7 E(85289): 3.2e-39
Smith-Waterman score: 1676; 100.0% identity (100.0% similar) in 249 aa overlap (1-249:1-249)

               10        20        30        40        50        60
pF1KB4 MASGVGAAFEELPHDGTCDECEPDEAPGAEEVCRECGFCYCRRHAEAHRQKFLSHHLAEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MASGVGAAFEELPHDGTCDECEPDEAPGAEEVCRECGFCYCRRHAEAHRQKFLSHHLAEY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 VHGSQAWTPPADGEGAGKEEAEVKVEQEREIESEAGEESESEEESESEEESETEEESEDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 VHGSQAWTPPADGEGAGKEEAEVKVEQEREIESEAGEESESEEESESEEESETEEESEDE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 SDEESEEDSEEEMEDEQESEAEEDNQEEGESEAEGETEAESEFDPEIEMEAERVAKRKCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 SDEESEEDSEEEMEDEQESEAEEDNQEEGESEAEGETEAESEFDPEIEMEAERVAKRKCP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 DHGLDLSTYCQEDRQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIELVER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DHGLDLSTYCQEDRQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIELVER
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 LKFKSSDPKVTRDQMKMFIQQEFKKVQKVIADEEQKALHLVDIQEAMATAHVTEILADIQ
       :::::::::                                                   
XP_006 LKFKSSDPKGDEEGPSGASEEEDT                                    
              250       260                                        




344 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:55:52 2016 done: Sat Nov  5 05:55:53 2016
 Total Scan time:  9.250 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]