FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4616, 344 aa
  1>>>pF1KB4616 344 - 344 aa - 344 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.6515+/-0.00115; mu= -6.4419+/- 0.070
 mean_var=395.5000+/-79.151, 0's: 0 Z-trim(113.1): 51  B-trim: 0 in 0/53
 Lambda= 0.064491
 statistics sampled from 13705 (13736) to 13705 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.744), E-opt: 0.2 (0.422), width:  16
 Scan time:  2.980

The best scores are:                                      opt bits E(32554)
CCDS31461.1 TRIM44 gene_id:54765|Hs108|chr11       ( 344) 2274 225.3 5.7e-59


>>CCDS31461.1 TRIM44 gene_id:54765|Hs108|chr11            (344 aa)
 initn: 2274 init1: 2274 opt: 2274  Z-score: 1172.1  bits: 225.3 E(32554): 5.7e-59
Smith-Waterman score: 2274; 100.0% identity (100.0% similar) in 344 aa overlap (1-344:1-344)

               10        20        30        40        50        60
pF1KB4 MASGVGAAFEELPHDGTCDECEPDEAPGAEEVCRECGFCYCRRHAEAHRQKFLSHHLAEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MASGVGAAFEELPHDGTCDECEPDEAPGAEEVCRECGFCYCRRHAEAHRQKFLSHHLAEY
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 VHGSQAWTPPADGEGAGKEEAEVKVEQEREIESEAGEESESEEESESEEESETEEESEDE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VHGSQAWTPPADGEGAGKEEAEVKVEQEREIESEAGEESESEEESESEEESETEEESEDE
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 SDEESEEDSEEEMEDEQESEAEEDNQEEGESEAEGETEAESEFDPEIEMEAERVAKRKCP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SDEESEEDSEEEMEDEQESEAEEDNQEEGESEAEGETEAESEFDPEIEMEAERVAKRKCP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 DHGLDLSTYCQEDRQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIELVER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DHGLDLSTYCQEDRQLICVLCPVIGAHQGHQLSTLDEAFEELRSKDSGGLKAAMIELVER
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 LKFKSSDPKVTRDQMKMFIQQEFKKVQKVIADEEQKALHLVDIQEAMATAHVTEILADIQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LKFKSSDPKVTRDQMKMFIQQEFKKVQKVIADEEQKALHLVDIQEAMATAHVTEILADIQ
              250       260       270       280       290       300

              310       320       330       340    
pF1KB4 SHMDRLMTQMAQAKEQLDTSNESAEPKAEGDEEGPSGASEEEDT
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SHMDRLMTQMAQAKEQLDTSNESAEPKAEGDEEGPSGASEEEDT
              310       320       330       340    




344 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:55:51 2016 done: Sat Nov  5 05:55:52 2016
 Total Scan time:  2.980 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]