Result of FASTA (omim) for
pF1KB4609
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4609, 278 aa
1>>>pF1KB4609 278 - 278 aa - 278 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5728+/-0.000374; mu= 10.9868+/- 0.023
mean_var=152.3286+/-30.194, 0's: 0 Z-trim(118.4): 376 B-trim: 282 in 2/53
Lambda= 0.103916
statistics sampled from 30807 (31276) to 30807 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.723), E-opt: 0.2 (0.367), width: 16
Scan time: 7.400
The best scores are: opt bits E(85289)
NP_872292 (OMIM: 614910) complement C1q tumor necr ( 278) 1904 296.8 3e-80
NP_114116 (OMIM: 614910) complement C1q tumor necr ( 278) 1904 296.8 3e-80
XP_016884058 (OMIM: 614910) PREDICTED: complement ( 278) 1793 280.1 3.1e-75
XP_016884060 (OMIM: 614910) PREDICTED: complement ( 259) 1771 276.8 2.9e-74
XP_011528159 (OMIM: 614910) PREDICTED: complement ( 259) 1771 276.8 2.9e-74
XP_016884059 (OMIM: 614910) PREDICTED: complement ( 259) 1771 276.8 2.9e-74
XP_016884063 (OMIM: 614910) PREDICTED: complement ( 259) 1771 276.8 2.9e-74
XP_016884061 (OMIM: 614910) PREDICTED: complement ( 259) 1771 276.8 2.9e-74
XP_016884062 (OMIM: 614910) PREDICTED: complement ( 259) 1771 276.8 2.9e-74
XP_011520785 (OMIM: 614147) PREDICTED: complement ( 252) 823 134.7 1.7e-31
NP_997302 (OMIM: 614147) complement C1q tumor necr ( 252) 823 134.7 1.7e-31
NP_940996 (OMIM: 610365) complement C1q tumor necr ( 199) 744 122.7 5.4e-28
XP_016879615 (OMIM: 610365) PREDICTED: complement ( 199) 744 122.7 5.4e-28
NP_112230 (OMIM: 610365) complement C1q tumor necr ( 281) 744 122.9 6.9e-28
NP_940995 (OMIM: 610365) complement C1q tumor necr ( 281) 744 122.9 6.9e-28
NP_699203 (OMIM: 610365) complement C1q tumor necr ( 281) 744 122.9 6.9e-28
XP_006721729 (OMIM: 610365) PREDICTED: complement ( 291) 744 122.9 7e-28
XP_006721727 (OMIM: 610365) PREDICTED: complement ( 330) 744 122.9 7.6e-28
XP_006721726 (OMIM: 610365) PREDICTED: complement ( 379) 744 123.0 8.4e-28
NP_004788 (OMIM: 605441,612556) adiponectin precur ( 244) 339 62.1 1.2e-09
NP_001171271 (OMIM: 605441,612556) adiponectin pre ( 244) 339 62.1 1.2e-09
NP_057075 (OMIM: 120550,613652) complement C1q sub ( 245) 317 58.8 1.2e-08
NP_001107573 (OMIM: 120575,613652) complement C1q ( 245) 271 51.9 1.4e-06
NP_758957 (OMIM: 120575,613652) complement C1q sub ( 245) 271 51.9 1.4e-06
NP_114115 (OMIM: 614911) complement C1q tumor necr ( 329) 266 51.3 2.9e-06
XP_016872654 (OMIM: 614911) PREDICTED: complement ( 329) 266 51.3 2.9e-06
XP_016872655 (OMIM: 614911) PREDICTED: complement ( 329) 266 51.3 2.9e-06
NP_001265360 (OMIM: 605670,608752) complement C1q ( 243) 263 50.7 3.2e-06
NP_056460 (OMIM: 605670,608752) complement C1q tum ( 243) 263 50.7 3.2e-06
XP_011540361 (OMIM: 120570,613652) PREDICTED: comp ( 253) 249 48.6 1.4e-05
NP_000482 (OMIM: 120570,613652) complement C1q sub ( 253) 249 48.6 1.4e-05
NP_006679 (OMIM: 611586) C1q-related factor precur ( 258) 241 47.4 3.2e-05
NP_008977 (OMIM: 130660) EMILIN-1 precursor [Homo (1016) 236 47.3 0.00014
NP_001034860 (OMIM: 612978) cerebellin-3 precursor ( 205) 207 42.2 0.00095
XP_016875369 (OMIM: 610375) PREDICTED: caprin-2 is ( 689) 210 43.2 0.0016
XP_016875368 (OMIM: 610375) PREDICTED: caprin-2 is ( 738) 210 43.3 0.0017
XP_016875367 (OMIM: 610375) PREDICTED: caprin-2 is ( 758) 210 43.3 0.0017
XP_016875366 (OMIM: 610375) PREDICTED: caprin-2 is ( 759) 210 43.3 0.0017
XP_016875365 (OMIM: 610375) PREDICTED: caprin-2 is ( 773) 210 43.3 0.0017
NP_001306771 (OMIM: 610375) caprin-2 isoform 5 [Ho ( 793) 210 43.3 0.0018
XP_016875363 (OMIM: 610375) PREDICTED: caprin-2 is ( 793) 210 43.3 0.0018
XP_016875350 (OMIM: 610375) PREDICTED: caprin-2 is ( 961) 210 43.4 0.002
XP_016875348 (OMIM: 610375) PREDICTED: caprin-2 is ( 962) 210 43.4 0.002
XP_016875346 (OMIM: 610375) PREDICTED: caprin-2 is (1010) 210 43.4 0.0021
XP_016875347 (OMIM: 610375) PREDICTED: caprin-2 is (1010) 210 43.4 0.0021
NP_001306773 (OMIM: 610375) caprin-2 isoform 7 [Ho (1011) 210 43.4 0.0021
XP_016875345 (OMIM: 610375) PREDICTED: caprin-2 is (1011) 210 43.4 0.0021
XP_016875344 (OMIM: 610375) PREDICTED: caprin-2 is (1025) 210 43.4 0.0021
XP_016875343 (OMIM: 610375) PREDICTED: caprin-2 is (1042) 210 43.4 0.0021
XP_006719207 (OMIM: 610375) PREDICTED: caprin-2 is (1043) 210 43.4 0.0021
>>NP_872292 (OMIM: 614910) complement C1q tumor necrosis (278 aa)
initn: 1904 init1: 1904 opt: 1904 Z-score: 1561.6 bits: 296.8 E(85289): 3e-80
Smith-Waterman score: 1904; 99.3% identity (99.3% similar) in 278 aa overlap (1-278:1-278)
10 20 30 40 50 60
pF1KB4 MQWLRVRESPGEATGHRVTMVTAALGPVWAALLLFLLMCEIRMVELTFDRAVASGCQRCC
:::::::::::::::::::: :::::::::::::::::::: ::::::::::::::::::
NP_872 MQWLRVRESPGEATGHRVTMGTAALGPVWAALLLFLLMCEIPMVELTFDRAVASGCQRCC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 DSEDPLDPAHVSSASSSGRPHALPEIRPYINITILKGDKGDPGPMGLPGYMGREGPQGEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 DSEDPLDPAHVSSASSSGRPHALPEIRPYINITILKGDKGDPGPMGLPGYMGREGPQGEP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GPQGSKGDKGEMGSPGAPCQKRFFAFSVGRKTALHSGEDFQTLLFERVFVNLDGCFDMAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 GPQGSKGDKGEMGSPGAPCQKRFFAFSVGRKTALHSGEDFQTLLFERVFVNLDGCFDMAT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 GQFAAPLRGIYFFSLNVHSWNYKETYVHIMHNQKEAVILYAQPSERSIMQSQSVMLDLAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_872 GQFAAPLRGIYFFSLNVHSWNYKETYVHIMHNQKEAVILYAQPSERSIMQSQSVMLDLAY
190 200 210 220 230 240
250 260 270
pF1KB4 GDRVWVRLFKRQRENAIYSNDFDTYITFSGHLIKAEDD
::::::::::::::::::::::::::::::::::::::
NP_872 GDRVWVRLFKRQRENAIYSNDFDTYITFSGHLIKAEDD
250 260 270
>>NP_114116 (OMIM: 614910) complement C1q tumor necrosis (278 aa)
initn: 1904 init1: 1904 opt: 1904 Z-score: 1561.6 bits: 296.8 E(85289): 3e-80
Smith-Waterman score: 1904; 99.3% identity (99.3% similar) in 278 aa overlap (1-278:1-278)
10 20 30 40 50 60
pF1KB4 MQWLRVRESPGEATGHRVTMVTAALGPVWAALLLFLLMCEIRMVELTFDRAVASGCQRCC
:::::::::::::::::::: :::::::::::::::::::: ::::::::::::::::::
NP_114 MQWLRVRESPGEATGHRVTMGTAALGPVWAALLLFLLMCEIPMVELTFDRAVASGCQRCC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 DSEDPLDPAHVSSASSSGRPHALPEIRPYINITILKGDKGDPGPMGLPGYMGREGPQGEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 DSEDPLDPAHVSSASSSGRPHALPEIRPYINITILKGDKGDPGPMGLPGYMGREGPQGEP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GPQGSKGDKGEMGSPGAPCQKRFFAFSVGRKTALHSGEDFQTLLFERVFVNLDGCFDMAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 GPQGSKGDKGEMGSPGAPCQKRFFAFSVGRKTALHSGEDFQTLLFERVFVNLDGCFDMAT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 GQFAAPLRGIYFFSLNVHSWNYKETYVHIMHNQKEAVILYAQPSERSIMQSQSVMLDLAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_114 GQFAAPLRGIYFFSLNVHSWNYKETYVHIMHNQKEAVILYAQPSERSIMQSQSVMLDLAY
190 200 210 220 230 240
250 260 270
pF1KB4 GDRVWVRLFKRQRENAIYSNDFDTYITFSGHLIKAEDD
::::::::::::::::::::::::::::::::::::::
NP_114 GDRVWVRLFKRQRENAIYSNDFDTYITFSGHLIKAEDD
250 260 270
>>XP_016884058 (OMIM: 614910) PREDICTED: complement C1q (278 aa)
initn: 1791 init1: 1791 opt: 1793 Z-score: 1471.7 bits: 280.1 E(85289): 3.1e-75
Smith-Waterman score: 1793; 94.6% identity (96.8% similar) in 278 aa overlap (1-278:1-278)
10 20 30 40 50 60
pF1KB4 MQWLRVRESPGEATGHRVTMVTAALGPVWAALLLFLLMCEIRMVELTFDRAVASGCQRCC
: :.. :: .. ..::: :::::::::::::::::::: ::::::::::::::::::
XP_016 MCLLEIVESVARKCQREVTMGTAALGPVWAALLLFLLMCEIPMVELTFDRAVASGCQRCC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 DSEDPLDPAHVSSASSSGRPHALPEIRPYINITILKGDKGDPGPMGLPGYMGREGPQGEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DSEDPLDPAHVSSASSSGRPHALPEIRPYINITILKGDKGDPGPMGLPGYMGREGPQGEP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GPQGSKGDKGEMGSPGAPCQKRFFAFSVGRKTALHSGEDFQTLLFERVFVNLDGCFDMAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GPQGSKGDKGEMGSPGAPCQKRFFAFSVGRKTALHSGEDFQTLLFERVFVNLDGCFDMAT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 GQFAAPLRGIYFFSLNVHSWNYKETYVHIMHNQKEAVILYAQPSERSIMQSQSVMLDLAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GQFAAPLRGIYFFSLNVHSWNYKETYVHIMHNQKEAVILYAQPSERSIMQSQSVMLDLAY
190 200 210 220 230 240
250 260 270
pF1KB4 GDRVWVRLFKRQRENAIYSNDFDTYITFSGHLIKAEDD
::::::::::::::::::::::::::::::::::::::
XP_016 GDRVWVRLFKRQRENAIYSNDFDTYITFSGHLIKAEDD
250 260 270
>>XP_016884060 (OMIM: 614910) PREDICTED: complement C1q (259 aa)
initn: 1771 init1: 1771 opt: 1771 Z-score: 1454.2 bits: 276.8 E(85289): 2.9e-74
Smith-Waterman score: 1771; 99.2% identity (99.2% similar) in 259 aa overlap (20-278:1-259)
10 20 30 40 50 60
pF1KB4 MQWLRVRESPGEATGHRVTMVTAALGPVWAALLLFLLMCEIRMVELTFDRAVASGCQRCC
: :::::::::::::::::::: ::::::::::::::::::
XP_016 MGTAALGPVWAALLLFLLMCEIPMVELTFDRAVASGCQRCC
10 20 30 40
70 80 90 100 110 120
pF1KB4 DSEDPLDPAHVSSASSSGRPHALPEIRPYINITILKGDKGDPGPMGLPGYMGREGPQGEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DSEDPLDPAHVSSASSSGRPHALPEIRPYINITILKGDKGDPGPMGLPGYMGREGPQGEP
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB4 GPQGSKGDKGEMGSPGAPCQKRFFAFSVGRKTALHSGEDFQTLLFERVFVNLDGCFDMAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GPQGSKGDKGEMGSPGAPCQKRFFAFSVGRKTALHSGEDFQTLLFERVFVNLDGCFDMAT
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB4 GQFAAPLRGIYFFSLNVHSWNYKETYVHIMHNQKEAVILYAQPSERSIMQSQSVMLDLAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GQFAAPLRGIYFFSLNVHSWNYKETYVHIMHNQKEAVILYAQPSERSIMQSQSVMLDLAY
170 180 190 200 210 220
250 260 270
pF1KB4 GDRVWVRLFKRQRENAIYSNDFDTYITFSGHLIKAEDD
::::::::::::::::::::::::::::::::::::::
XP_016 GDRVWVRLFKRQRENAIYSNDFDTYITFSGHLIKAEDD
230 240 250
>>XP_011528159 (OMIM: 614910) PREDICTED: complement C1q (259 aa)
initn: 1771 init1: 1771 opt: 1771 Z-score: 1454.2 bits: 276.8 E(85289): 2.9e-74
Smith-Waterman score: 1771; 99.2% identity (99.2% similar) in 259 aa overlap (20-278:1-259)
10 20 30 40 50 60
pF1KB4 MQWLRVRESPGEATGHRVTMVTAALGPVWAALLLFLLMCEIRMVELTFDRAVASGCQRCC
: :::::::::::::::::::: ::::::::::::::::::
XP_011 MGTAALGPVWAALLLFLLMCEIPMVELTFDRAVASGCQRCC
10 20 30 40
70 80 90 100 110 120
pF1KB4 DSEDPLDPAHVSSASSSGRPHALPEIRPYINITILKGDKGDPGPMGLPGYMGREGPQGEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSEDPLDPAHVSSASSSGRPHALPEIRPYINITILKGDKGDPGPMGLPGYMGREGPQGEP
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB4 GPQGSKGDKGEMGSPGAPCQKRFFAFSVGRKTALHSGEDFQTLLFERVFVNLDGCFDMAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPQGSKGDKGEMGSPGAPCQKRFFAFSVGRKTALHSGEDFQTLLFERVFVNLDGCFDMAT
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB4 GQFAAPLRGIYFFSLNVHSWNYKETYVHIMHNQKEAVILYAQPSERSIMQSQSVMLDLAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GQFAAPLRGIYFFSLNVHSWNYKETYVHIMHNQKEAVILYAQPSERSIMQSQSVMLDLAY
170 180 190 200 210 220
250 260 270
pF1KB4 GDRVWVRLFKRQRENAIYSNDFDTYITFSGHLIKAEDD
::::::::::::::::::::::::::::::::::::::
XP_011 GDRVWVRLFKRQRENAIYSNDFDTYITFSGHLIKAEDD
230 240 250
>>XP_016884059 (OMIM: 614910) PREDICTED: complement C1q (259 aa)
initn: 1771 init1: 1771 opt: 1771 Z-score: 1454.2 bits: 276.8 E(85289): 2.9e-74
Smith-Waterman score: 1771; 99.2% identity (99.2% similar) in 259 aa overlap (20-278:1-259)
10 20 30 40 50 60
pF1KB4 MQWLRVRESPGEATGHRVTMVTAALGPVWAALLLFLLMCEIRMVELTFDRAVASGCQRCC
: :::::::::::::::::::: ::::::::::::::::::
XP_016 MGTAALGPVWAALLLFLLMCEIPMVELTFDRAVASGCQRCC
10 20 30 40
70 80 90 100 110 120
pF1KB4 DSEDPLDPAHVSSASSSGRPHALPEIRPYINITILKGDKGDPGPMGLPGYMGREGPQGEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DSEDPLDPAHVSSASSSGRPHALPEIRPYINITILKGDKGDPGPMGLPGYMGREGPQGEP
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB4 GPQGSKGDKGEMGSPGAPCQKRFFAFSVGRKTALHSGEDFQTLLFERVFVNLDGCFDMAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GPQGSKGDKGEMGSPGAPCQKRFFAFSVGRKTALHSGEDFQTLLFERVFVNLDGCFDMAT
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB4 GQFAAPLRGIYFFSLNVHSWNYKETYVHIMHNQKEAVILYAQPSERSIMQSQSVMLDLAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GQFAAPLRGIYFFSLNVHSWNYKETYVHIMHNQKEAVILYAQPSERSIMQSQSVMLDLAY
170 180 190 200 210 220
250 260 270
pF1KB4 GDRVWVRLFKRQRENAIYSNDFDTYITFSGHLIKAEDD
::::::::::::::::::::::::::::::::::::::
XP_016 GDRVWVRLFKRQRENAIYSNDFDTYITFSGHLIKAEDD
230 240 250
>>XP_016884063 (OMIM: 614910) PREDICTED: complement C1q (259 aa)
initn: 1771 init1: 1771 opt: 1771 Z-score: 1454.2 bits: 276.8 E(85289): 2.9e-74
Smith-Waterman score: 1771; 99.2% identity (99.2% similar) in 259 aa overlap (20-278:1-259)
10 20 30 40 50 60
pF1KB4 MQWLRVRESPGEATGHRVTMVTAALGPVWAALLLFLLMCEIRMVELTFDRAVASGCQRCC
: :::::::::::::::::::: ::::::::::::::::::
XP_016 MGTAALGPVWAALLLFLLMCEIPMVELTFDRAVASGCQRCC
10 20 30 40
70 80 90 100 110 120
pF1KB4 DSEDPLDPAHVSSASSSGRPHALPEIRPYINITILKGDKGDPGPMGLPGYMGREGPQGEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DSEDPLDPAHVSSASSSGRPHALPEIRPYINITILKGDKGDPGPMGLPGYMGREGPQGEP
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB4 GPQGSKGDKGEMGSPGAPCQKRFFAFSVGRKTALHSGEDFQTLLFERVFVNLDGCFDMAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GPQGSKGDKGEMGSPGAPCQKRFFAFSVGRKTALHSGEDFQTLLFERVFVNLDGCFDMAT
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB4 GQFAAPLRGIYFFSLNVHSWNYKETYVHIMHNQKEAVILYAQPSERSIMQSQSVMLDLAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GQFAAPLRGIYFFSLNVHSWNYKETYVHIMHNQKEAVILYAQPSERSIMQSQSVMLDLAY
170 180 190 200 210 220
250 260 270
pF1KB4 GDRVWVRLFKRQRENAIYSNDFDTYITFSGHLIKAEDD
::::::::::::::::::::::::::::::::::::::
XP_016 GDRVWVRLFKRQRENAIYSNDFDTYITFSGHLIKAEDD
230 240 250
>>XP_016884061 (OMIM: 614910) PREDICTED: complement C1q (259 aa)
initn: 1771 init1: 1771 opt: 1771 Z-score: 1454.2 bits: 276.8 E(85289): 2.9e-74
Smith-Waterman score: 1771; 99.2% identity (99.2% similar) in 259 aa overlap (20-278:1-259)
10 20 30 40 50 60
pF1KB4 MQWLRVRESPGEATGHRVTMVTAALGPVWAALLLFLLMCEIRMVELTFDRAVASGCQRCC
: :::::::::::::::::::: ::::::::::::::::::
XP_016 MGTAALGPVWAALLLFLLMCEIPMVELTFDRAVASGCQRCC
10 20 30 40
70 80 90 100 110 120
pF1KB4 DSEDPLDPAHVSSASSSGRPHALPEIRPYINITILKGDKGDPGPMGLPGYMGREGPQGEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DSEDPLDPAHVSSASSSGRPHALPEIRPYINITILKGDKGDPGPMGLPGYMGREGPQGEP
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB4 GPQGSKGDKGEMGSPGAPCQKRFFAFSVGRKTALHSGEDFQTLLFERVFVNLDGCFDMAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GPQGSKGDKGEMGSPGAPCQKRFFAFSVGRKTALHSGEDFQTLLFERVFVNLDGCFDMAT
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB4 GQFAAPLRGIYFFSLNVHSWNYKETYVHIMHNQKEAVILYAQPSERSIMQSQSVMLDLAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GQFAAPLRGIYFFSLNVHSWNYKETYVHIMHNQKEAVILYAQPSERSIMQSQSVMLDLAY
170 180 190 200 210 220
250 260 270
pF1KB4 GDRVWVRLFKRQRENAIYSNDFDTYITFSGHLIKAEDD
::::::::::::::::::::::::::::::::::::::
XP_016 GDRVWVRLFKRQRENAIYSNDFDTYITFSGHLIKAEDD
230 240 250
>>XP_016884062 (OMIM: 614910) PREDICTED: complement C1q (259 aa)
initn: 1771 init1: 1771 opt: 1771 Z-score: 1454.2 bits: 276.8 E(85289): 2.9e-74
Smith-Waterman score: 1771; 99.2% identity (99.2% similar) in 259 aa overlap (20-278:1-259)
10 20 30 40 50 60
pF1KB4 MQWLRVRESPGEATGHRVTMVTAALGPVWAALLLFLLMCEIRMVELTFDRAVASGCQRCC
: :::::::::::::::::::: ::::::::::::::::::
XP_016 MGTAALGPVWAALLLFLLMCEIPMVELTFDRAVASGCQRCC
10 20 30 40
70 80 90 100 110 120
pF1KB4 DSEDPLDPAHVSSASSSGRPHALPEIRPYINITILKGDKGDPGPMGLPGYMGREGPQGEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DSEDPLDPAHVSSASSSGRPHALPEIRPYINITILKGDKGDPGPMGLPGYMGREGPQGEP
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB4 GPQGSKGDKGEMGSPGAPCQKRFFAFSVGRKTALHSGEDFQTLLFERVFVNLDGCFDMAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GPQGSKGDKGEMGSPGAPCQKRFFAFSVGRKTALHSGEDFQTLLFERVFVNLDGCFDMAT
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB4 GQFAAPLRGIYFFSLNVHSWNYKETYVHIMHNQKEAVILYAQPSERSIMQSQSVMLDLAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GQFAAPLRGIYFFSLNVHSWNYKETYVHIMHNQKEAVILYAQPSERSIMQSQSVMLDLAY
170 180 190 200 210 220
250 260 270
pF1KB4 GDRVWVRLFKRQRENAIYSNDFDTYITFSGHLIKAEDD
::::::::::::::::::::::::::::::::::::::
XP_016 GDRVWVRLFKRQRENAIYSNDFDTYITFSGHLIKAEDD
230 240 250
>>XP_011520785 (OMIM: 614147) PREDICTED: complement C1q (252 aa)
initn: 1048 init1: 803 opt: 823 Z-score: 686.3 bits: 134.7 E(85289): 1.7e-31
Smith-Waterman score: 823; 54.5% identity (77.0% similar) in 222 aa overlap (56-274:26-247)
30 40 50 60 70 80
pF1KB4 GPVWAALLLFLLMCEIRMVELTFDRAVASGCQRCCDSEDPLDP-AHVSSAS--SSGRPHA
: .:: : : :.::. . . ..
XP_011 MAAPALLLLALLLPVGAWPGLPRRPCVHCCRPAWPPGPYARVSDRDLWRGDLWRG
10 20 30 40 50
90 100 110 120 130 140
pF1KB4 LPEIRPYINITILKGDKGDPGPMGLPGYMGREGPQGEPGPQGSKGDKGEMGSPGAPCQKR
::..:: :.: ::::.::. : : : :.::: : : :: .:.::..: ::: :..
XP_011 LPRVRPTIDIEILKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAACRRA
60 70 80 90 100 110
150 160 170 180 190 200
pF1KB4 FFAFSVGRKTALHSGEDFQTLLFERVFVNLDGCFDMATGQFAAPLRGIYFFSLNVHSWNY
. ::::::. .:::.. ::.. :. .::::: ::.:.:.: . :.::.:::::.:::
XP_011 YAAFSVGRREGLHSSDHFQAVPFDTELVNLDGAFDLAAGRFLCTVPGVYFLSLNVHTWNY
120 130 140 150 160 170
210 220 230 240 250 260
pF1KB4 KETYVHIMHNQKEAVILYAQPSERSIMQSQSVMLDLAYGDRVWVRLFKRQRENAIYSNDF
::::.::: :.. :..:::::::::.::.::.:: :: :: ::::.:.:.:.::::..
XP_011 KETYLHIMLNRRPAAVLYAQPSERSVMQAQSLMLLLAAGDAVWVRMFQRDRDNAIYGEHG
180 190 200 210 220 230
270
pF1KB4 DTYITFSGHLIKAEDD
: ::::::::.:
XP_011 DLYITFSGHLVKPAAEL
240 250
278 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:05:22 2016 done: Fri Nov 4 03:05:23 2016
Total Scan time: 7.400 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]