Result of FASTA (ccds) for
pF1KB4609
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4609, 278 aa
1>>>pF1KB4609 278 - 278 aa - 278 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5802+/-0.000825; mu= 10.7679+/- 0.050
mean_var=122.0473+/-23.946, 0's: 0 Z-trim(111.6): 132 B-trim: 0 in 0/53
Lambda= 0.116094
statistics sampled from 12401 (12535) to 12401 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.737), E-opt: 0.2 (0.385), width: 16
Scan time: 2.270
The best scores are: opt bits E(32554)
CCDS13943.1 C1QTNF6 gene_id:114904|Hs108|chr22 ( 278) 1904 329.3 1.8e-90
CCDS32358.1 C1QTNF8 gene_id:390664|Hs108|chr16 ( 252) 823 148.3 5.4e-36
CCDS11762.1 C1QTNF1 gene_id:114897|Hs108|chr17 ( 199) 744 134.9 4.3e-32
CCDS11761.1 C1QTNF1 gene_id:114897|Hs108|chr17 ( 281) 744 135.1 5.6e-32
CCDS3284.1 ADIPOQ gene_id:9370|Hs108|chr3 ( 244) 339 67.2 1.3e-11
>>CCDS13943.1 C1QTNF6 gene_id:114904|Hs108|chr22 (278 aa)
initn: 1904 init1: 1904 opt: 1904 Z-score: 1737.6 bits: 329.3 E(32554): 1.8e-90
Smith-Waterman score: 1904; 99.3% identity (99.3% similar) in 278 aa overlap (1-278:1-278)
10 20 30 40 50 60
pF1KB4 MQWLRVRESPGEATGHRVTMVTAALGPVWAALLLFLLMCEIRMVELTFDRAVASGCQRCC
:::::::::::::::::::: :::::::::::::::::::: ::::::::::::::::::
CCDS13 MQWLRVRESPGEATGHRVTMGTAALGPVWAALLLFLLMCEIPMVELTFDRAVASGCQRCC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 DSEDPLDPAHVSSASSSGRPHALPEIRPYINITILKGDKGDPGPMGLPGYMGREGPQGEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 DSEDPLDPAHVSSASSSGRPHALPEIRPYINITILKGDKGDPGPMGLPGYMGREGPQGEP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 GPQGSKGDKGEMGSPGAPCQKRFFAFSVGRKTALHSGEDFQTLLFERVFVNLDGCFDMAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GPQGSKGDKGEMGSPGAPCQKRFFAFSVGRKTALHSGEDFQTLLFERVFVNLDGCFDMAT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 GQFAAPLRGIYFFSLNVHSWNYKETYVHIMHNQKEAVILYAQPSERSIMQSQSVMLDLAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GQFAAPLRGIYFFSLNVHSWNYKETYVHIMHNQKEAVILYAQPSERSIMQSQSVMLDLAY
190 200 210 220 230 240
250 260 270
pF1KB4 GDRVWVRLFKRQRENAIYSNDFDTYITFSGHLIKAEDD
::::::::::::::::::::::::::::::::::::::
CCDS13 GDRVWVRLFKRQRENAIYSNDFDTYITFSGHLIKAEDD
250 260 270
>>CCDS32358.1 C1QTNF8 gene_id:390664|Hs108|chr16 (252 aa)
initn: 1048 init1: 803 opt: 823 Z-score: 759.7 bits: 148.3 E(32554): 5.4e-36
Smith-Waterman score: 823; 54.5% identity (77.0% similar) in 222 aa overlap (56-274:26-247)
30 40 50 60 70 80
pF1KB4 GPVWAALLLFLLMCEIRMVELTFDRAVASGCQRCCDSEDPLDP-AHVSSAS--SSGRPHA
: .:: : : :.::. . . ..
CCDS32 MAAPALLLLALLLPVGAWPGLPRRPCVHCCRPAWPPGPYARVSDRDLWRGDLWRG
10 20 30 40 50
90 100 110 120 130 140
pF1KB4 LPEIRPYINITILKGDKGDPGPMGLPGYMGREGPQGEPGPQGSKGDKGEMGSPGAPCQKR
::..:: :.: ::::.::. : : : :.::: : : :: .:.::..: ::: :..
CCDS32 LPRVRPTIDIEILKGEKGEAGVRGRAGRSGKEGPPGARGLQGRRGQKGQVGPPGAACRRA
60 70 80 90 100 110
150 160 170 180 190 200
pF1KB4 FFAFSVGRKTALHSGEDFQTLLFERVFVNLDGCFDMATGQFAAPLRGIYFFSLNVHSWNY
. ::::::. .:::.. ::.. :. .::::: ::.:.:.: . :.::.:::::.:::
CCDS32 YAAFSVGRREGLHSSDHFQAVPFDTELVNLDGAFDLAAGRFLCTVPGVYFLSLNVHTWNY
120 130 140 150 160 170
210 220 230 240 250 260
pF1KB4 KETYVHIMHNQKEAVILYAQPSERSIMQSQSVMLDLAYGDRVWVRLFKRQRENAIYSNDF
::::.::: :.. :..:::::::::.::.::.:: :: :: ::::.:.:.:.::::..
CCDS32 KETYLHIMLNRRPAAVLYAQPSERSVMQAQSLMLLLAAGDAVWVRMFQRDRDNAIYGEHG
180 190 200 210 220 230
270
pF1KB4 DTYITFSGHLIKAEDD
: ::::::::.:
CCDS32 DLYITFSGHLVKPAAEL
240 250
>>CCDS11762.1 C1QTNF1 gene_id:114897|Hs108|chr17 (199 aa)
initn: 948 init1: 735 opt: 744 Z-score: 689.6 bits: 134.9 E(32554): 4.3e-32
Smith-Waterman score: 744; 58.8% identity (80.2% similar) in 187 aa overlap (88-274:8-194)
60 70 80 90 100 110
pF1KB4 RCCDSEDPLDPAHVSSASSSGRPHALPEIRPYINITILKGDKGDPGPMGLPGYMGREGPQ
: ::::::::.::: : :: : .:. :
CCDS11 MYPATAVPQINITILKGEKGDRGDRGLQGKYGKTGSA
10 20 30
120 130 140 150 160 170
pF1KB4 GEPGPQGSKGDKGEMGSPGAPCQKRFFAFSVGRKTALHSGEDFQTLLFERVFVNLDGCFD
: : : ::.:: ::.:: :.... ::::::: .::.. .::..:. :::: :.
CCDS11 GARGHTGPKGQKGSMGAPGERCKSHYAAFSVGRKKPMHSNHYYQTVIFDTEFVNLYDHFN
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB4 MATGQFAAPLRGIYFFSLNVHSWNYKETYVHIMHNQKEAVILYAQPSERSIMQSQSVMLD
: ::.: . :.::::::::.:: ::::.:::.:..:.:::.:: ..::::::::.::.
CCDS11 MFTGKFYCYVPGLYFFSLNVHTWNQKETYLHIMKNEEEVVILFAQVGDRSIMQSQSLMLE
100 110 120 130 140 150
240 250 260 270
pF1KB4 LAYGDRVWVRLFKRQRENAIYSNDFDTYITFSGHLIKAEDD
: :.:::::.: .:::::.:...::::::::.:.:
CCDS11 LREQDQVWVRLYKGERENAIFSEELDTYITFSGYLVKHATEP
160 170 180 190
>>CCDS11761.1 C1QTNF1 gene_id:114897|Hs108|chr17 (281 aa)
initn: 948 init1: 735 opt: 744 Z-score: 687.6 bits: 135.1 E(32554): 5.6e-32
Smith-Waterman score: 769; 54.1% identity (73.4% similar) in 222 aa overlap (53-274:70-276)
30 40 50 60 70 80
pF1KB4 AALGPVWAALLLFLLMCEIRMVELTFDRAVASGCQRCCDSEDPLDPAHVSSASSSGRPHA
:: : :::: . :: :
CCDS11 TEELPSPPDHAERAEEQHEKYRPSQDQGLPASRCLRCCDPGTSMYPAT-----------A
40 50 60 70 80
90 100 110 120 130 140
pF1KB4 LPEIRPYINITILKGDKGDPGPMGLPGYMGREGPQGEPGPQGSKGDKGEMGSPGAPCQKR
.:.: :::::::.::: : :: : .:. : : : : ::.:: ::.:: :...
CCDS11 VPQI----NITILKGEKGDRGDRGLQGKYGKTGSAGARGHTGPKGQKGSMGAPGERCKSH
90 100 110 120 130 140
150 160 170 180 190 200
pF1KB4 FFAFSVGRKTALHSGEDFQTLLFERVFVNLDGCFDMATGQFAAPLRGIYFFSLNVHSWNY
. ::::::: .::.. .::..:. :::: :.: ::.: . :.::::::::.::
CCDS11 YAAFSVGRKKPMHSNHYYQTVIFDTEFVNLYDHFNMFTGKFYCYVPGLYFFSLNVHTWNQ
150 160 170 180 190 200
210 220 230 240 250 260
pF1KB4 KETYVHIMHNQKEAVILYAQPSERSIMQSQSVMLDLAYGDRVWVRLFKRQRENAIYSNDF
::::.:::.:..:.:::.:: ..::::::::.::.: :.:::::.: .:::::.:...
CCDS11 KETYLHIMKNEEEVVILFAQVGDRSIMQSQSLMLELREQDQVWVRLYKGERENAIFSEEL
210 220 230 240 250 260
270
pF1KB4 DTYITFSGHLIKAEDD
::::::::.:.:
CCDS11 DTYITFSGYLVKHATEP
270 280
>>CCDS3284.1 ADIPOQ gene_id:9370|Hs108|chr3 (244 aa)
initn: 352 init1: 160 opt: 339 Z-score: 321.8 bits: 67.2 E(32554): 1.3e-11
Smith-Waterman score: 342; 31.8% identity (60.2% similar) in 211 aa overlap (65-273:44-239)
40 50 60 70 80 90
pF1KB4 FLLMCEIRMVELTFDRAVASGCQRCCDSEDPLDPAHVSSASSSGRPHALPEIRPYINITI
: :.: .. . .:: . :
CCDS32 PGHDQETTTQGPGVLLPLPKGACTGWMAGIPGHPGHNGAPGRDGRDGTPGE---------
20 30 40 50 60
100 110 120 130 140 150
pF1KB4 LKGDKGDPGPMGLPGYMGREGPQGEPGPQGSKGDKGEMGSPGAPCQKRFFAFSVGRKTAL
::.::::: .: : .:. : : ::.: : .:. : :: ::::: .: .
CCDS32 -KGEKGDPGLIGPKGDIGETGVPGAEGPRGFPGIQGRKGEPGEGAYVYRSAFSVGLETYV
70 80 90 100 110 120
160 170 180 190 200 210
pF1KB4 HSGEDFQTLLFERVFVNLDGCFDMATGQFAAPLRGIYFFSLNVHSWNYKETYVHIMHNQK
. . . : ..: : .. .: .::.: . :.:.:. .. . .:.. : .....:
CCDS32 TIPN--MPIRFTKIFYNQQNHYDGSTGKFHCNIPGLYYFAYHITVY-MKDVKVSLFKKDK
130 140 150 160 170 180
220 230 240 250 260 270
pF1KB4 EAVILYAQPSERSIMQ-SQSVMLDLAYGDRVWVRLFKRQRENAIYS-NDFDTYITFSGHL
.. : : .: .. : : ::.: : ::.::.... . ..:..:. :: :. ::.: :
CCDS32 AMLFTYDQYQENNVDQASGSVLLHLEVGDQVWLQVYGEGERNGLYADNDNDS--TFTGFL
190 200 210 220 230
pF1KB4 IKAEDD
.
CCDS32 LYHDTN
240
278 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 03:05:21 2016 done: Fri Nov 4 03:05:22 2016
Total Scan time: 2.270 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]