Result of FASTA (omim) for
pF1KB4606
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4606, 123 aa
1>>>pF1KB4606 123 - 123 aa - 123 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.9203+/-0.00038; mu= 12.0898+/- 0.024
mean_var=51.1201+/-10.144, 0's: 0 Z-trim(111.5): 32 B-trim: 161 in 1/50
Lambda= 0.179382
statistics sampled from 20137 (20164) to 20137 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.612), E-opt: 0.2 (0.236), width: 16
Scan time: 4.300
The best scores are: opt bits E(85289)
NP_751951 (OMIM: 603796,611493,613693) potassium v ( 123) 793 212.8 1.2e-55
NP_001257331 (OMIM: 176261,612347,613695) potassiu ( 129) 169 51.3 4.9e-07
NP_001121141 (OMIM: 176261,612347,613695) potassiu ( 129) 169 51.3 4.9e-07
NP_001121140 (OMIM: 176261,612347,613695) potassiu ( 129) 169 51.3 4.9e-07
NP_001257332 (OMIM: 176261,612347,613695) potassiu ( 129) 169 51.3 4.9e-07
NP_001121142 (OMIM: 176261,612347,613695) potassiu ( 129) 169 51.3 4.9e-07
NP_001257333 (OMIM: 176261,612347,613695) potassiu ( 129) 169 51.3 4.9e-07
NP_000210 (OMIM: 176261,612347,613695) potassium v ( 129) 169 51.3 4.9e-07
NP_001257334 (OMIM: 176261,612347,613695) potassiu ( 129) 169 51.3 4.9e-07
XP_016883831 (OMIM: 176261,612347,613695) PREDICTE ( 150) 169 51.3 5.6e-07
>>NP_751951 (OMIM: 603796,611493,613693) potassium volta (123 aa)
initn: 793 init1: 793 opt: 793 Z-score: 1120.3 bits: 212.8 E(85289): 1.2e-55
Smith-Waterman score: 793; 100.0% identity (100.0% similar) in 123 aa overlap (1-123:1-123)
10 20 30 40 50 60
pF1KB4 MSTLSNFTQTLEDVFRRIFITYMDNWRQNTTAEQEALQAKVDAENFYYVILYLMVMIGMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_751 MSTLSNFTQTLEDVFRRIFITYMDNWRQNTTAEQEALQAKVDAENFYYVILYLMVMIGMF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 SFIIVAILVSTVKSKRREHSNDPYHQYIVEDWQEKYKSQILNLEESKATIHENIGAAGFK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_751 SFIIVAILVSTVKSKRREHSNDPYHQYIVEDWQEKYKSQILNLEESKATIHENIGAAGFK
70 80 90 100 110 120
pF1KB4 MSP
:::
NP_751 MSP
>>NP_001257331 (OMIM: 176261,612347,613695) potassium vo (129 aa)
initn: 167 init1: 140 opt: 169 Z-score: 247.3 bits: 51.3 E(85289): 4.9e-07
Smith-Waterman score: 169; 45.1% identity (82.4% similar) in 51 aa overlap (51-100:45-95)
30 40 50 60 70 80
pF1KB4 TYMDNWRQNTTAEQEALQAKVDAENFYYVILYLMVMIGMFSFIIVAILVSTVKSKRREHS
::.....:.:.:. ..:..: ..::. :::
NP_001 KLWQETVQQGGNMSGLARRSPRSSDGKLEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHS
20 30 40 50 60 70
90 100 110 120
pF1KB4 NDPYHQYIVED-WQEKYKSQILNLEESKATIHENIGAAGFKMSP
:::.. :: : :::: :. .
NP_001 NDPFNVYIESDAWQEKDKAYVQARVLESYRSCYVVENHLAIEQPNTHLPETKPSP
80 90 100 110 120
>>NP_001121141 (OMIM: 176261,612347,613695) potassium vo (129 aa)
initn: 167 init1: 140 opt: 169 Z-score: 247.3 bits: 51.3 E(85289): 4.9e-07
Smith-Waterman score: 169; 45.1% identity (82.4% similar) in 51 aa overlap (51-100:45-95)
30 40 50 60 70 80
pF1KB4 TYMDNWRQNTTAEQEALQAKVDAENFYYVILYLMVMIGMFSFIIVAILVSTVKSKRREHS
::.....:.:.:. ..:..: ..::. :::
NP_001 KLWQETVQQGGNMSGLARRSPRSSDGKLEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHS
20 30 40 50 60 70
90 100 110 120
pF1KB4 NDPYHQYIVED-WQEKYKSQILNLEESKATIHENIGAAGFKMSP
:::.. :: : :::: :. .
NP_001 NDPFNVYIESDAWQEKDKAYVQARVLESYRSCYVVENHLAIEQPNTHLPETKPSP
80 90 100 110 120
>>NP_001121140 (OMIM: 176261,612347,613695) potassium vo (129 aa)
initn: 167 init1: 140 opt: 169 Z-score: 247.3 bits: 51.3 E(85289): 4.9e-07
Smith-Waterman score: 169; 45.1% identity (82.4% similar) in 51 aa overlap (51-100:45-95)
30 40 50 60 70 80
pF1KB4 TYMDNWRQNTTAEQEALQAKVDAENFYYVILYLMVMIGMFSFIIVAILVSTVKSKRREHS
::.....:.:.:. ..:..: ..::. :::
NP_001 KLWQETVQQGGNMSGLARRSPRSSDGKLEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHS
20 30 40 50 60 70
90 100 110 120
pF1KB4 NDPYHQYIVED-WQEKYKSQILNLEESKATIHENIGAAGFKMSP
:::.. :: : :::: :. .
NP_001 NDPFNVYIESDAWQEKDKAYVQARVLESYRSCYVVENHLAIEQPNTHLPETKPSP
80 90 100 110 120
>>NP_001257332 (OMIM: 176261,612347,613695) potassium vo (129 aa)
initn: 167 init1: 140 opt: 169 Z-score: 247.3 bits: 51.3 E(85289): 4.9e-07
Smith-Waterman score: 169; 45.1% identity (82.4% similar) in 51 aa overlap (51-100:45-95)
30 40 50 60 70 80
pF1KB4 TYMDNWRQNTTAEQEALQAKVDAENFYYVILYLMVMIGMFSFIIVAILVSTVKSKRREHS
::.....:.:.:. ..:..: ..::. :::
NP_001 KLWQETVQQGGNMSGLARRSPRSSDGKLEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHS
20 30 40 50 60 70
90 100 110 120
pF1KB4 NDPYHQYIVED-WQEKYKSQILNLEESKATIHENIGAAGFKMSP
:::.. :: : :::: :. .
NP_001 NDPFNVYIESDAWQEKDKAYVQARVLESYRSCYVVENHLAIEQPNTHLPETKPSP
80 90 100 110 120
>>NP_001121142 (OMIM: 176261,612347,613695) potassium vo (129 aa)
initn: 167 init1: 140 opt: 169 Z-score: 247.3 bits: 51.3 E(85289): 4.9e-07
Smith-Waterman score: 169; 45.1% identity (82.4% similar) in 51 aa overlap (51-100:45-95)
30 40 50 60 70 80
pF1KB4 TYMDNWRQNTTAEQEALQAKVDAENFYYVILYLMVMIGMFSFIIVAILVSTVKSKRREHS
::.....:.:.:. ..:..: ..::. :::
NP_001 KLWQETVQQGGNMSGLARRSPRSSDGKLEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHS
20 30 40 50 60 70
90 100 110 120
pF1KB4 NDPYHQYIVED-WQEKYKSQILNLEESKATIHENIGAAGFKMSP
:::.. :: : :::: :. .
NP_001 NDPFNVYIESDAWQEKDKAYVQARVLESYRSCYVVENHLAIEQPNTHLPETKPSP
80 90 100 110 120
>>NP_001257333 (OMIM: 176261,612347,613695) potassium vo (129 aa)
initn: 167 init1: 140 opt: 169 Z-score: 247.3 bits: 51.3 E(85289): 4.9e-07
Smith-Waterman score: 169; 45.1% identity (82.4% similar) in 51 aa overlap (51-100:45-95)
30 40 50 60 70 80
pF1KB4 TYMDNWRQNTTAEQEALQAKVDAENFYYVILYLMVMIGMFSFIIVAILVSTVKSKRREHS
::.....:.:.:. ..:..: ..::. :::
NP_001 KLWQETVQQGGNMSGLARRSPRSSDGKLEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHS
20 30 40 50 60 70
90 100 110 120
pF1KB4 NDPYHQYIVED-WQEKYKSQILNLEESKATIHENIGAAGFKMSP
:::.. :: : :::: :. .
NP_001 NDPFNVYIESDAWQEKDKAYVQARVLESYRSCYVVENHLAIEQPNTHLPETKPSP
80 90 100 110 120
>>NP_000210 (OMIM: 176261,612347,613695) potassium volta (129 aa)
initn: 167 init1: 140 opt: 169 Z-score: 247.3 bits: 51.3 E(85289): 4.9e-07
Smith-Waterman score: 169; 45.1% identity (82.4% similar) in 51 aa overlap (51-100:45-95)
30 40 50 60 70 80
pF1KB4 TYMDNWRQNTTAEQEALQAKVDAENFYYVILYLMVMIGMFSFIIVAILVSTVKSKRREHS
::.....:.:.:. ..:..: ..::. :::
NP_000 KLWQETVQQGGNMSGLARRSPRSSDGKLEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHS
20 30 40 50 60 70
90 100 110 120
pF1KB4 NDPYHQYIVED-WQEKYKSQILNLEESKATIHENIGAAGFKMSP
:::.. :: : :::: :. .
NP_000 NDPFNVYIESDAWQEKDKAYVQARVLESYRSCYVVENHLAIEQPNTHLPETKPSP
80 90 100 110 120
>>NP_001257334 (OMIM: 176261,612347,613695) potassium vo (129 aa)
initn: 167 init1: 140 opt: 169 Z-score: 247.3 bits: 51.3 E(85289): 4.9e-07
Smith-Waterman score: 169; 45.1% identity (82.4% similar) in 51 aa overlap (51-100:45-95)
30 40 50 60 70 80
pF1KB4 TYMDNWRQNTTAEQEALQAKVDAENFYYVILYLMVMIGMFSFIIVAILVSTVKSKRREHS
::.....:.:.:. ..:..: ..::. :::
NP_001 KLWQETVQQGGNMSGLARRSPRSSDGKLEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHS
20 30 40 50 60 70
90 100 110 120
pF1KB4 NDPYHQYIVED-WQEKYKSQILNLEESKATIHENIGAAGFKMSP
:::.. :: : :::: :. .
NP_001 NDPFNVYIESDAWQEKDKAYVQARVLESYRSCYVVENHLAIEQPNTHLPETKPSP
80 90 100 110 120
>>XP_016883831 (OMIM: 176261,612347,613695) PREDICTED: p (150 aa)
initn: 167 init1: 140 opt: 169 Z-score: 246.2 bits: 51.3 E(85289): 5.6e-07
Smith-Waterman score: 169; 45.1% identity (82.4% similar) in 51 aa overlap (51-100:66-116)
30 40 50 60 70 80
pF1KB4 TYMDNWRQNTTAEQEALQAKVDAENFYYVILYLMVMIGMFSFIIVAILVSTVKSKRREHS
::.....:.:.:. ..:..: ..::. :::
XP_016 KLWQETVQQGGNMSGLARRSPRSSDGKLEALYVLMVLGFFGFFTLGIMLSYIRSKKLEHS
40 50 60 70 80 90
90 100 110 120
pF1KB4 NDPYHQYIVED-WQEKYKSQILNLEESKATIHENIGAAGFKMSP
:::.. :: : :::: :. .
XP_016 NDPFNVYIESDAWQEKDKAYVQARVLESYRSCYVVENHLAIEQPNTHLPETKPSP
100 110 120 130 140 150
123 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 06:29:27 2016 done: Sat Nov 5 06:29:28 2016
Total Scan time: 4.300 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]