FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4568, 370 aa
  1>>>pF1KB4568 370 - 370 aa - 370 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7501+/-0.000813; mu= 14.5423+/- 0.049
 mean_var=73.1658+/-14.302, 0's: 0 Z-trim(108.3): 20  B-trim: 0 in 0/50
 Lambda= 0.149941
 statistics sampled from 10080 (10095) to 10080 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.69), E-opt: 0.2 (0.31), width:  16
 Scan time:  2.840

The best scores are:                                      opt bits E(32554)
CCDS2017.2 STARD7 gene_id:56910|Hs108|chr2         ( 370) 2497 549.2 2.1e-156
CCDS11588.1 PCTP gene_id:58488|Hs108|chr17         ( 214)  377 90.5 1.4e-18
CCDS82165.1 PCTP gene_id:58488|Hs108|chr17         ( 203)  346 83.8 1.4e-16
CCDS82166.1 PCTP gene_id:58488|Hs108|chr17         ( 219)  339 82.3 4.4e-16
CCDS45741.1 PCTP gene_id:58488|Hs108|chr17         ( 142)  292 72.1 3.5e-13


>>CCDS2017.2 STARD7 gene_id:56910|Hs108|chr2              (370 aa)
 initn: 2497 init1: 2497 opt: 2497  Z-score: 2921.6  bits: 549.2 E(32554): 2.1e-156
Smith-Waterman score: 2497; 100.0% identity (100.0% similar) in 370 aa overlap (1-370:1-370)

               10        20        30        40        50        60
pF1KB4 MLPRRLLAAWLAGTRGGGLLALLANQCRFVTGLRVRRAQQIAQLYGRLYSESSRRVLLGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MLPRRLLAAWLAGTRGGGLLALLANQCRFVTGLRVRRAQQIAQLYGRLYSESSRRVLLGR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 LWRRLHGRPGHASALMAALAGVFVWDEERIQEEELQRSINEMKRLEEMSNMFQSSGVQHH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 LWRRLHGRPGHASALMAALAGVFVWDEERIQEEELQRSINEMKRLEEMSNMFQSSGVQHH
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 PPEPKAQTEGNEDSEGKEQRWEMVMDKKHFKLWRRPITGTHLYQYRVFGTYTDVTPRQFF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 PPEPKAQTEGNEDSEGKEQRWEMVMDKKHFKLWRRPITGTHLYQYRVFGTYTDVTPRQFF
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 NVQLDTEYRKKWDALVIKLEVIERDVVSGSEVLHWVTHFPYPMYSRDYVYVRRYSVDQEN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 NVQLDTEYRKKWDALVIKLEVIERDVVSGSEVLHWVTHFPYPMYSRDYVYVRRYSVDQEN
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 NMMVLVSRAVEHPSVPESPEFVRVRSYESQMVIRPHKSFDENGFDYLLTYSDNPQTVFPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 NMMVLVSRAVEHPSVPESPEFVRVRSYESQMVIRPHKSFDENGFDYLLTYSDNPQTVFPR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 YCVSWMVSSGMPDFLEKLHMATLKAKNMEIKVKDYISAKPLEMSSEAKATSQSSERKNEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 YCVSWMVSSGMPDFLEKLHMATLKAKNMEIKVKDYISAKPLEMSSEAKATSQSSERKNEG
              310       320       330       340       350       360

              370
pF1KB4 SCGPARIEYA
       ::::::::::
CCDS20 SCGPARIEYA
              370

>>CCDS11588.1 PCTP gene_id:58488|Hs108|chr17              (214 aa)
 initn: 328 init1: 131 opt: 377  Z-score: 446.8  bits: 90.5 E(32554): 1.4e-18
Smith-Waterman score: 377; 30.6% identity (68.9% similar) in 183 aa overlap (141-321:30-206)

              120       130       140       150       160       170
pF1KB4 MFQSSGVQHHPPEPKAQTEGNEDSEGKEQRWEMVMDKKHFKLWRRPITGTHLYQYRVFGT
                                     :..... . ....:     : ::.:.:::.
CCDS11  MELAAGSFSEEQFWEACAELQQPALAGADWQLLVETSGISIYRLLDKKTGLYEYKVFGV
                10        20        30        40        50         

              180       190       200       210       220       230
pF1KB4 YTDVTPRQFFNVQLDTEYRKKWDALVIKLEVIERDVVSGSEVLHWVTHFPYPMYSRDYVY
         : .:  . .. .:..:::.::  :   :. :..  .:  :..: ...:.:: .:::::
CCDS11 LEDCSPTLLADIYMDSDYRKQWDQYV--KELYEQEC-NGETVVYWEVKYPFPMSNRDYVY
      60        70        80          90        100       110      

               240        250       260       270       280        
pF1KB4 VR-RYSVDQEN-NMMVLVSRAVEHPSVPESPEFVRVRSYESQMVIRPHKSFDENGFDYLL
       .: : ..:.:. .. :...:..  :.. :    .::..:.....:   .:  ..:   ..
CCDS11 LRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAI---ESDGKKGSKVFM
        120       130       140       150       160          170   

      290       300       310       320       330       340        
pF1KB4 TYSDNPQTVFPRYCVSWMVSSGMPDFLEKLHMATLKAKNMEIKVKDYISAKPLEMSSEAK
        : :::   .: . ..: ...:.:.::. .  :                           
CCDS11 YYFDNPGGQIPSWLINWAAKNGVPNFLKDMARACQNYLKKT                   
           180       190       200       210                       

      350       360       370
pF1KB4 ATSQSSERKNEGSCGPARIEYA

>>CCDS82165.1 PCTP gene_id:58488|Hs108|chr17              (203 aa)
 initn: 278 init1: 134 opt: 346  Z-score: 410.9  bits: 83.8 E(32554): 1.4e-16
Smith-Waterman score: 346; 30.2% identity (68.6% similar) in 172 aa overlap (141-310:30-195)

              120       130       140       150       160       170
pF1KB4 MFQSSGVQHHPPEPKAQTEGNEDSEGKEQRWEMVMDKKHFKLWRRPITGTHLYQYRVFGT
                                     :..... . ....:     : ::.:.:::.
CCDS82  MELAAGSFSEEQFWEACAELQQPALAGADWQLLVETSGISIYRLLDKKTGLYEYKVFGV
                10        20        30        40        50         

              180       190       200       210       220       230
pF1KB4 YTDVTPRQFFNVQLDTEYRKKWDALVIKLEVIERDVVSGSEVLHWVTHFPYPMYSRDYVY
         : .:  . .. .:..:::.::  :   :. :..  .:  :..: ...:.:: .:::::
CCDS82 LEDCSPTLLADIYMDSDYRKQWDQYVK--ELYEQEC-NGETVVYWEVKYPFPMSNRDYVY
      60        70        80          90        100       110      

               240        250       260       270       280        
pF1KB4 VR-RYSVDQEN-NMMVLVSRAVEHPSVPESPEFVRVRSYESQMVIRPHKSFDENGFDYLL
       .: : ..:.:. .. :...:..  :.. :    .::..:.....:   .:  ..:   ..
CCDS82 LRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAI---ESDGKKGSKVFM
        120       130       140       150       160          170   

      290       300       310       320       330       340        
pF1KB4 TYSDNPQTVFPRYCVSWMVSSGMPDFLEKLHMATLKAKNMEIKVKDYISAKPLEMSSEAK
        : :::   .: . ..: ...:                                      
CCDS82 YYFDNPGGQIPSWLINWAAKGGNCSGSLYH                              
           180       190       200                                 

>>CCDS82166.1 PCTP gene_id:58488|Hs108|chr17              (219 aa)
 initn: 275 init1: 131 opt: 339  Z-score: 402.2  bits: 82.3 E(32554): 4.4e-16
Smith-Waterman score: 339; 30.5% identity (68.3% similar) in 167 aa overlap (141-305:30-190)

              120       130       140       150       160       170
pF1KB4 MFQSSGVQHHPPEPKAQTEGNEDSEGKEQRWEMVMDKKHFKLWRRPITGTHLYQYRVFGT
                                     :..... . ....:     : ::.:.:::.
CCDS82  MELAAGSFSEEQFWEACAELQQPALAGADWQLLVETSGISIYRLLDKKTGLYEYKVFGV
                10        20        30        40        50         

              180       190       200       210       220       230
pF1KB4 YTDVTPRQFFNVQLDTEYRKKWDALVIKLEVIERDVVSGSEVLHWVTHFPYPMYSRDYVY
         : .:  . .. .:..:::.::  :   :. :..  .:  :..: ...:.:: .:::::
CCDS82 LEDCSPTLLADIYMDSDYRKQWDQYV--KELYEQEC-NGETVVYWEVKYPFPMSNRDYVY
      60        70        80          90        100       110      

               240        250       260       270       280        
pF1KB4 VR-RYSVDQEN-NMMVLVSRAVEHPSVPESPEFVRVRSYESQMVIRPHKSFDENGFDYLL
       .: : ..:.:. .. :...:..  :.. :    .::..:.....:   .:  ..:   ..
CCDS82 LRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSLAI---ESDGKKGSKVFM
        120       130       140       150       160          170   

      290       300       310       320       330       340        
pF1KB4 TYSDNPQTVFPRYCVSWMVSSGMPDFLEKLHMATLKAKNMEIKVKDYISAKPLEMSSEAK
        : :::   .: . ..:                                           
CCDS82 YYFDNPGGQIPSWLINWAAKNQSRTKREAQNQRDLIKFLANPNILQ              
           180       190       200       210                       

>>CCDS45741.1 PCTP gene_id:58488|Hs108|chr17              (142 aa)
 initn: 229 init1:  85 opt: 292  Z-score: 350.2  bits: 72.1 E(32554): 3.5e-13
Smith-Waterman score: 292; 32.1% identity (70.0% similar) in 140 aa overlap (184-321:1-134)

           160       170       180       190       200       210   
pF1KB4 RRPITGTHLYQYRVFGTYTDVTPRQFFNVQLDTEYRKKWDALVIKLEVIERDVVSGSEVL
                                     .:..:::.::  :   :. :..  .:  :.
CCDS45                               MDSDYRKQWDQYVK--ELYEQEC-NGETVV
                                             10          20        

           220       230        240        250       260       270 
pF1KB4 HWVTHFPYPMYSRDYVYVR-RYSVDQEN-NMMVLVSRAVEHPSVPESPEFVRVRSYESQM
       .: ...:.:: .:::::.: : ..:.:. .. :...:..  :.. :    .::..:....
CCDS45 YWEVKYPFPMSNRDYVYLRQRRDLDMEGRKIHVILARSTSMPQLGERSGVIRVKQYKQSL
        30        40        50        60        70        80       

             280       290       300       310       320       330 
pF1KB4 VIRPHKSFDENGFDYLLTYSDNPQTVFPRYCVSWMVSSGMPDFLEKLHMATLKAKNMEIK
       .:   .:  ..:   .. : :::   .: . ..: ...:.:.::. .  :          
CCDS45 AI---ESDGKKGSKVFMYYFDNPGGQIPSWLINWAAKNGVPNFLKDMARACQNYLKKT  
           90       100       110       120       130       140    

             340       350       360       370
pF1KB4 VKDYISAKPLEMSSEAKATSQSSERKNEGSCGPARIEYA




370 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 12:19:54 2016 done: Sat Nov  5 12:19:55 2016
 Total Scan time:  2.840 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]