Result of FASTA (omim) for
pF1KB4563
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4563, 910 aa
1>>>pF1KB4563 910 - 910 aa - 910 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4976+/-0.000411; mu= 20.0860+/- 0.026
mean_var=71.3736+/-13.998, 0's: 0 Z-trim(111.5): 63 B-trim: 100 in 1/52
Lambda= 0.151812
statistics sampled from 19992 (20055) to 19992 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.598), E-opt: 0.2 (0.235), width: 16
Scan time: 11.920
The best scores are: opt bits E(85289)
NP_055205 (OMIM: 602181) staphylococcal nuclease d ( 910) 5972 1318.0 0
XP_016867476 (OMIM: 602181) PREDICTED: staphylococ ( 607) 3889 861.6 0
XP_016871903 (OMIM: 605796) PREDICTED: tudor domai (1141) 219 58.0 3.1e-07
XP_016855618 (OMIM: 609501) PREDICTED: tudor and K ( 337) 199 53.3 2.3e-06
XP_016855617 (OMIM: 609501) PREDICTED: tudor and K ( 337) 199 53.3 2.3e-06
XP_016855619 (OMIM: 609501) PREDICTED: tudor and K ( 337) 199 53.3 2.3e-06
XP_005244913 (OMIM: 609501) PREDICTED: tudor and K ( 337) 199 53.3 2.3e-06
XP_005270036 (OMIM: 605796) PREDICTED: tudor domai (1113) 204 54.7 2.9e-06
XP_011538265 (OMIM: 605796) PREDICTED: tudor domai (1180) 204 54.7 3.1e-06
XP_005270035 (OMIM: 605796) PREDICTED: tudor domai (1189) 204 54.7 3.1e-06
XP_011538262 (OMIM: 605796) PREDICTED: tudor domai (1189) 204 54.7 3.1e-06
XP_011538263 (OMIM: 605796) PREDICTED: tudor domai (1189) 204 54.7 3.1e-06
XP_011538264 (OMIM: 605796) PREDICTED: tudor domai (1189) 204 54.7 3.1e-06
NP_942090 (OMIM: 605796) tudor domain-containing p (1189) 204 54.7 3.1e-06
XP_011538261 (OMIM: 605796) PREDICTED: tudor domai (1189) 204 54.7 3.1e-06
NP_001077433 (OMIM: 609501) tudor and KH domain-co ( 516) 199 53.4 3.3e-06
XP_016855615 (OMIM: 609501) PREDICTED: tudor and K ( 561) 199 53.4 3.5e-06
XP_016855614 (OMIM: 609501) PREDICTED: tudor and K ( 561) 199 53.4 3.5e-06
NP_001077432 (OMIM: 609501) tudor and KH domain-co ( 561) 199 53.4 3.5e-06
XP_016855616 (OMIM: 609501) PREDICTED: tudor and K ( 561) 199 53.4 3.5e-06
NP_006853 (OMIM: 609501) tudor and KH domain-conta ( 561) 199 53.4 3.5e-06
XP_016855611 (OMIM: 609501) PREDICTED: tudor and K ( 561) 199 53.4 3.5e-06
XP_016855612 (OMIM: 609501) PREDICTED: tudor and K ( 561) 199 53.4 3.5e-06
XP_016855613 (OMIM: 609501) PREDICTED: tudor and K ( 561) 199 53.4 3.5e-06
NP_001077434 (OMIM: 609501) tudor and KH domain-co ( 561) 199 53.4 3.5e-06
NP_001171922 (OMIM: 605793) RING finger protein 17 (1619) 194 52.6 1.8e-05
NP_112567 (OMIM: 605793) RING finger protein 17 is (1623) 194 52.6 1.8e-05
XP_011533462 (OMIM: 605793) PREDICTED: RING finger (1646) 194 52.6 1.9e-05
XP_011533461 (OMIM: 605793) PREDICTED: RING finger (1650) 194 52.6 1.9e-05
NP_001161831 (OMIM: 611200) tudor domain-containin (2066) 185 50.7 8.8e-05
NP_001010870 (OMIM: 611200) tudor domain-containin (2096) 185 50.7 8.9e-05
XP_016880680 (OMIM: 602449) PREDICTED: A-kinase an ( 903) 152 43.3 0.0066
XP_005257764 (OMIM: 602449) PREDICTED: A-kinase an ( 903) 152 43.3 0.0066
NP_001229832 (OMIM: 602449) A-kinase anchor protei ( 903) 152 43.3 0.0066
XP_016880679 (OMIM: 602449) PREDICTED: A-kinase an ( 903) 152 43.3 0.0066
XP_016880678 (OMIM: 602449) PREDICTED: A-kinase an ( 903) 152 43.3 0.0066
NP_001229831 (OMIM: 602449) A-kinase anchor protei ( 903) 152 43.3 0.0066
NP_003479 (OMIM: 602449) A-kinase anchor protein 1 ( 903) 152 43.3 0.0066
XP_005257766 (OMIM: 602449) PREDICTED: A-kinase an ( 903) 152 43.3 0.0066
XP_011533465 (OMIM: 605793) PREDICTED: RING finger (1261) 153 43.6 0.0075
XP_011533464 (OMIM: 605793) PREDICTED: RING finger (1498) 153 43.6 0.0087
XP_006719915 (OMIM: 605793) PREDICTED: RING finger (1531) 153 43.6 0.0088
XP_016876165 (OMIM: 605793) PREDICTED: RING finger (1611) 153 43.6 0.0092
XP_011533460 (OMIM: 605793) PREDICTED: RING finger (1657) 153 43.6 0.0094
XP_006719912 (OMIM: 605793) PREDICTED: RING finger (1672) 153 43.6 0.0095
XP_006719909 (OMIM: 605793) PREDICTED: RING finger (1692) 153 43.6 0.0096
XP_011533459 (OMIM: 605793) PREDICTED: RING finger (1695) 153 43.6 0.0096
XP_011533457 (OMIM: 605793) PREDICTED: RING finger (1699) 153 43.6 0.0096
XP_011533454 (OMIM: 605793) PREDICTED: RING finger (1699) 153 43.6 0.0096
XP_011533458 (OMIM: 605793) PREDICTED: RING finger (1699) 153 43.6 0.0096
>>NP_055205 (OMIM: 602181) staphylococcal nuclease domai (910 aa)
initn: 5972 init1: 5972 opt: 5972 Z-score: 7062.1 bits: 1318.0 E(85289): 0
Smith-Waterman score: 5972; 99.9% identity (99.9% similar) in 910 aa overlap (1-910:1-910)
10 20 30 40 50 60
pF1KB4 MASSAQSGGSSGGPAVPTVQRGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MASSAQSGGSSGGPAVPTVQRGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RRAAATQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGREYGMIYLGKDTNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 RRAAATQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGREYGMIYLGKDTNG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 ENIAESLVAEGLATRREGMRANNPEQNRLSECEEQAKAAKKGMWSEGNGSHTIRDLKYTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ENIAESLVAEGLATRREGMRANNPEQNRLSECEEQAKAAKKGMWSEGNGSHTIRDLKYTI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 ENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTVMLSGIKCPTFRREADGSET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 ENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTVMLSGIKCPTFRREADGSET
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 PEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGTILHPNGNITELLLKEGFARCVDWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 PEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGTILHPNGNITELLLKEGFARCVDWS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 IAVYTRGAEKLRAAERVAKERRLRIWRDYVAPTANLDQKDKQFVAKVMQVLNADAIVVKL
:::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
NP_055 IAVYTRGAEKLRAAERFAKERRLRIWRDYVAPTANLDQKDKQFVAKVMQVLNADAIVVKL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 NSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGKKVNVTVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 NSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGKKVNVTVD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 YIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 YIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 AAEARAIKNGKGLHSKKEVPIHRVADISGDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 AAEARAIKNGKGLHSKKEVPIHRVADISGDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB4 KLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVEVEVES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVEVEVES
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB4 MDKAGNFIGWLHIDGANLSVLLVEHALSKVHFTAERSSYYKSLLSAEEAAKQKKEKVWAH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MDKAGNFIGWLHIDGANLSVLLVEHALSKVHFTAERSSYYKSLLSAEEAAKQKKEKVWAH
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB4 YEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIAS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 YEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIAS
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB4 HPPVEGSYAPRRGEFCIAKFVDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 HPPVEGSYAPRRGEFCIAKFVDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTL
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB4 SPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHLSAGCPHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHLSAGCPHV
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB4 TLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRYGDFRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 TLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRYGDFRA
850 860 870 880 890 900
910
pF1KB4 DDADEFGYSR
::::::::::
NP_055 DDADEFGYSR
910
>>XP_016867476 (OMIM: 602181) PREDICTED: staphylococcal (607 aa)
initn: 3889 init1: 3889 opt: 3889 Z-score: 4599.1 bits: 861.6 E(85289): 0
Smith-Waterman score: 3889; 99.8% identity (99.8% similar) in 593 aa overlap (1-593:1-593)
10 20 30 40 50 60
pF1KB4 MASSAQSGGSSGGPAVPTVQRGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MASSAQSGGSSGGPAVPTVQRGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 RRAAATQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGREYGMIYLGKDTNG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RRAAATQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGREYGMIYLGKDTNG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 ENIAESLVAEGLATRREGMRANNPEQNRLSECEEQAKAAKKGMWSEGNGSHTIRDLKYTI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ENIAESLVAEGLATRREGMRANNPEQNRLSECEEQAKAAKKGMWSEGNGSHTIRDLKYTI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 ENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTVMLSGIKCPTFRREADGSET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTVMLSGIKCPTFRREADGSET
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 PEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGTILHPNGNITELLLKEGFARCVDWS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGTILHPNGNITELLLKEGFARCVDWS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 IAVYTRGAEKLRAAERVAKERRLRIWRDYVAPTANLDQKDKQFVAKVMQVLNADAIVVKL
:::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
XP_016 IAVYTRGAEKLRAAERFAKERRLRIWRDYVAPTANLDQKDKQFVAKVMQVLNADAIVVKL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 NSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGKKVNVTVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGKKVNVTVD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 YIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELL
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 AAEARAIKNGKGLHSKKEVPIHRVADISGDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 AAEARAIKNGKGLHSKKEVPIHRVADISGDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRL
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB4 KLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVEVEVES
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQRECLPDNSL
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB4 MDKAGNFIGWLHIDGANLSVLLVEHALSKVHFTAERSSYYKSLLSAEEAAKQKKEKVWAH
XP_016 IIHLKYK
>>XP_016871903 (OMIM: 605796) PREDICTED: tudor domain-co (1141 aa)
initn: 311 init1: 114 opt: 219 Z-score: 250.9 bits: 58.0 E(85289): 3.1e-07
Smith-Waterman score: 219; 22.7% identity (53.5% similar) in 353 aa overlap (482-823:247-585)
460 470 480 490 500
pF1KB4 EALVSKGLATVIRYRQDDDQRSSHYDELLAAEARAIKNGKGLHSKKEVPIH-RVADIS--
:: ... ..:. :: . :. :....
XP_016 ENKSSIETKDVEVNNKSDCPLGVTKEIAIWAERIMFSDLRSLQLKKTMEIKGTVTEFKHP
220 230 240 250 260 270
510 520 530 540 550 560
pF1KB4 GDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRLKLYLP--KETCLITFLL-AGIECPRGAR
:: :. .. : .. .... . : :.: :.:. . . .:.: :
XP_016 GDFYVQLYSSEVLEYMNQLSASLKETYANVHEKDYIPVKGEVCIAKYTVDQAIKC-FVAN
280 290 300 310 320 330
570 580 590 600 610 620
pF1KB4 NLPGLVQEGEPFSEEATLFTKELVLQREVEVEVESMDKAGNFIGWLHIDGANLSVLLVEH
.:. ::. .: . :: :.... ... .. . .... : : :..:
XP_016 VIPA---EGN-WSSDCIKATKPLLMEQYCSIKIVDILEEEVVTFAVEVELPN-SGKLLDH
340 350 360 370 380 390
630 640 650 660 670 680
pF1KB4 ALSKVHFTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPV----EEVMPVLEEKERSAS
.: .. . . :. .. :.: .. : : :. . ...: . . .
XP_016 VLIEMGYGLKPSGQDSK---KENADQSDPEDVGKMTTENNIVVDKSDLIPKVLTLNVGDE
400 410 420 430 440
690 700 710 720 730 740
pF1KB4 YKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIASHPPVEGSYAPRRGEFCIAKFV
. : :..: :. :....: .: .:. .. . . :: .... : :..: :.:
XP_016 FCGV-VAHIQTPEDFFCQQLQSGRKLAELQASLSKYCDQLPP-RSDFYPAIGDICCAQFS
450 460 470 480 490 500
750 760 770 780 790 800
pF1KB4 -DGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFSTRVLPAQATEYAFAF
: .:::: : : .. : :.:::: :.: :: . : . :: :: . ..:
XP_016 EDDQWYRASVLAYASEESVLVGYVDYGNFEILSLMRLCPIIPKLLE--LPMQAIKCVLAG
510 520 530 540 550 560
810 820 830 840 850 860
pF1KB4 IQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHLSAGCPHVTLQFADSKGDVGLGLVKEGL
.. :. .:. . . .::
XP_016 VK-PSLGIWTPEAICLMKKLVQNKIITVKVVDKLENSSLVELIDKSETPHVSVSKVLLDA
570 580 590 600 610 620
>>XP_016855618 (OMIM: 609501) PREDICTED: tudor and KH do (337 aa)
initn: 56 init1: 56 opt: 199 Z-score: 235.2 bits: 53.3 E(85289): 2.3e-06
Smith-Waterman score: 199; 24.4% identity (55.6% similar) in 266 aa overlap (643-891:40-297)
620 630 640 650 660 670
pF1KB4 IDGANLSVLLVEHALSKVHFTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPV
..: : . .. .. . . : : . : ::.
XP_016 PALWKNTSSSMEPTAPLVTPPPKGGGDMAVVVSKEGSWEKPSDDSFQKSEAQAIPE-MPM
10 20 30 40 50 60
680 690 700 710 720
pF1KB4 LEEKERSAS-----YKPVFVTEITDDLHFYVQDVETGT-QLEKLMENMRNDIASHPPVEG
.: . : : :.:. ::..: : . . ::.::...: . . : .
XP_016 FEIPSPDFSFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDL
70 80 90 100 110 120
730 740 750 760 770 780
pF1KB4 SYAPRRGEFCIAKF-VDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFS
. . :.. : . ..: :::::: . ... ....:.:. : : .: :
XP_016 TV--HVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFL
130 140 150 160 170 180
790 800 810 820 830
pF1KB4 TRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHLSAGC-------P
. :: :: : ..: : .:. :. . .:.: : . .. : ..:. :
XP_016 S--LPFQAIECSLARI-APSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWP
190 200 210 220 230 240
840 850 860 870 880 890
pF1KB4 HVTLQFADSKG---DVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRY
.. : . :.: :.:: ::..: . .:. .. . .... ..:. . . .: :.
XP_016 KIYL-YDTSNGKKLDIGLELVHKGYA-IELPEDIEENRAVPDMLKDMATETDASLSTLLT
250 260 270 280 290 300
900 910
pF1KB4 GDFRADDADEFGYSR
XP_016 ETKKSSGEITHTLSCLSLSEAASMSGDDNLEDDYLL
310 320 330
>>XP_016855617 (OMIM: 609501) PREDICTED: tudor and KH do (337 aa)
initn: 56 init1: 56 opt: 199 Z-score: 235.2 bits: 53.3 E(85289): 2.3e-06
Smith-Waterman score: 199; 24.4% identity (55.6% similar) in 266 aa overlap (643-891:40-297)
620 630 640 650 660 670
pF1KB4 IDGANLSVLLVEHALSKVHFTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPV
..: : . .. .. . . : : . : ::.
XP_016 PALWKNTSSSMEPTAPLVTPPPKGGGDMAVVVSKEGSWEKPSDDSFQKSEAQAIPE-MPM
10 20 30 40 50 60
680 690 700 710 720
pF1KB4 LEEKERSAS-----YKPVFVTEITDDLHFYVQDVETGT-QLEKLMENMRNDIASHPPVEG
.: . : : :.:. ::..: : . . ::.::...: . . : .
XP_016 FEIPSPDFSFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDL
70 80 90 100 110 120
730 740 750 760 770 780
pF1KB4 SYAPRRGEFCIAKF-VDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFS
. . :.. : . ..: :::::: . ... ....:.:. : : .: :
XP_016 TV--HVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFL
130 140 150 160 170 180
790 800 810 820 830
pF1KB4 TRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHLSAGC-------P
. :: :: : ..: : .:. :. . .:.: : . .. : ..:. :
XP_016 S--LPFQAIECSLARI-APSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWP
190 200 210 220 230 240
840 850 860 870 880 890
pF1KB4 HVTLQFADSKG---DVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRY
.. : . :.: :.:: ::..: . .:. .. . .... ..:. . . .: :.
XP_016 KIYL-YDTSNGKKLDIGLELVHKGYA-IELPEDIEENRAVPDMLKDMATETDASLSTLLT
250 260 270 280 290 300
900 910
pF1KB4 GDFRADDADEFGYSR
XP_016 ETKKSSGEITHTLSCLSLSEAASMSGDDNLEDDYLL
310 320 330
>>XP_016855619 (OMIM: 609501) PREDICTED: tudor and KH do (337 aa)
initn: 56 init1: 56 opt: 199 Z-score: 235.2 bits: 53.3 E(85289): 2.3e-06
Smith-Waterman score: 199; 24.4% identity (55.6% similar) in 266 aa overlap (643-891:40-297)
620 630 640 650 660 670
pF1KB4 IDGANLSVLLVEHALSKVHFTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPV
..: : . .. .. . . : : . : ::.
XP_016 PALWKNTSSSMEPTAPLVTPPPKGGGDMAVVVSKEGSWEKPSDDSFQKSEAQAIPE-MPM
10 20 30 40 50 60
680 690 700 710 720
pF1KB4 LEEKERSAS-----YKPVFVTEITDDLHFYVQDVETGT-QLEKLMENMRNDIASHPPVEG
.: . : : :.:. ::..: : . . ::.::...: . . : .
XP_016 FEIPSPDFSFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDL
70 80 90 100 110 120
730 740 750 760 770 780
pF1KB4 SYAPRRGEFCIAKF-VDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFS
. . :.. : . ..: :::::: . ... ....:.:. : : .: :
XP_016 TV--HVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFL
130 140 150 160 170 180
790 800 810 820 830
pF1KB4 TRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHLSAGC-------P
. :: :: : ..: : .:. :. . .:.: : . .. : ..:. :
XP_016 S--LPFQAIECSLARI-APSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWP
190 200 210 220 230 240
840 850 860 870 880 890
pF1KB4 HVTLQFADSKG---DVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRY
.. : . :.: :.:: ::..: . .:. .. . .... ..:. . . .: :.
XP_016 KIYL-YDTSNGKKLDIGLELVHKGYA-IELPEDIEENRAVPDMLKDMATETDASLSTLLT
250 260 270 280 290 300
900 910
pF1KB4 GDFRADDADEFGYSR
XP_016 ETKKSSGEITHTLSCLSLSEAASMSGDDNLEDDYLL
310 320 330
>>XP_005244913 (OMIM: 609501) PREDICTED: tudor and KH do (337 aa)
initn: 56 init1: 56 opt: 199 Z-score: 235.2 bits: 53.3 E(85289): 2.3e-06
Smith-Waterman score: 199; 24.4% identity (55.6% similar) in 266 aa overlap (643-891:40-297)
620 630 640 650 660 670
pF1KB4 IDGANLSVLLVEHALSKVHFTAERSSYYKSLLSAEEAAKQKKEKVWAHYEEQPVEEVMPV
..: : . .. .. . . : : . : ::.
XP_005 PALWKNTSSSMEPTAPLVTPPPKGGGDMAVVVSKEGSWEKPSDDSFQKSEAQAIPE-MPM
10 20 30 40 50 60
680 690 700 710 720
pF1KB4 LEEKERSAS-----YKPVFVTEITDDLHFYVQDVETGT-QLEKLMENMRNDIASHPPVEG
.: . : : :.:. ::..: : . . ::.::...: . . : .
XP_005 FEIPSPDFSFHADEYLEVYVSASEHPNHFWIQIVGSRSLQLDKLVNEMTQHYENSVPEDL
70 80 90 100 110 120
730 740 750 760 770 780
pF1KB4 SYAPRRGEFCIAKF-VDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTLSPAFS
. . :.. : . ..: :::::: . ... ....:.:. : : .: :
XP_005 TV--HVGDIVAAPLPTNGSWYRARVLGTLENGNLDLYFVDFGDNGDCPLKDLRALRSDFL
130 140 150 160 170 180
790 800 810 820 830
pF1KB4 TRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHLSAGC-------P
. :: :: : ..: : .:. :. . .:.: : . .. : ..:. :
XP_005 S--LPFQAIECSLARI-APSGDQWEEEALDEFDRLTHCADWKPLVAKISSYVQTGISTWP
190 200 210 220 230 240
840 850 860 870 880 890
pF1KB4 HVTLQFADSKG---DVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRY
.. : . :.: :.:: ::..: . .:. .. . .... ..:. . . .: :.
XP_005 KIYL-YDTSNGKKLDIGLELVHKGYA-IELPEDIEENRAVPDMLKDMATETDASLSTLLT
250 260 270 280 290 300
900 910
pF1KB4 GDFRADDADEFGYSR
XP_005 ETKKSSGEITHTLSCLSLSEAASMSGDDNLEDDYLL
310 320 330
>>XP_005270036 (OMIM: 605796) PREDICTED: tudor domain-co (1113 aa)
initn: 338 init1: 114 opt: 204 Z-score: 233.3 bits: 54.7 E(85289): 2.9e-06
Smith-Waterman score: 211; 30.2% identity (60.4% similar) in 149 aa overlap (687-830:270-412)
660 670 680 690 700 710
pF1KB4 VWAHYEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQ--DVETGTQLEKLMENM
:::. :::: . :. ...: ..
XP_005 TKEIAIWAERIMFSDLRSLQLKKTMEIKGTVTEFKHPGDFYVQLYSSEVLEYMNQLSASL
240 250 260 270 280 290
720 730 740 750 760 770
pF1KB4 RNDIAS-HPPVEGSYAPRRGEFCIAKF-VDGEWYRARVEKVE-SPAKIHVFYIDYGNREV
.. :. : : .: : .:: ::::. :: : :: ...:. . : ::.::::::.:.
XP_005 KETYANVH---EKDYIPVKGEVCIAKYTVDQTWNRAIIQNVDVQQKKAHVLYIDYGNEEI
300 310 320 330 340 350
780 790 800 810 820 830
pF1KB4 LPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVE
.: .:. :. .. ..: : . :. .: . . .: . .. ... : ...
XP_005 IPLNRIYHLNRNID--LFPPCAIK-CFVANVIPAEGNWSSDCIKATKPLLMEQYCSIKIV
360 370 380 390 400 410
840 850 860 870 880 890
pF1KB4 HLSAGCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLN
XP_005 DILEEEVVTFAVEVELPNSGKLLDHVLIEMGYGLKPSGQDSKKENADQSDPEDVGKMTTE
420 430 440 450 460 470
>--
initn: 311 init1: 114 opt: 203 Z-score: 232.1 bits: 54.5 E(85289): 3.4e-06
Smith-Waterman score: 203; 29.7% identity (58.0% similar) in 138 aa overlap (687-823:500-633)
660 670 680 690 700 710
pF1KB4 VWAHYEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRN
:..: :. :....: .: .:. .. .
XP_005 MTTENNIVVDKSDLIPKVLTLNVGDEFCGVVAHIQTPEDFFCQQLQSGRKLAELQASLSK
470 480 490 500 510 520
720 730 740 750 760 770
pF1KB4 DIASHPPVEGSYAPRRGEFCIAKFV-DGEWYRARVEKVESPAKIHVFYIDYGNREVLPST
. :: .... : :..: :.: : .:::: : : .. : :.:::: :.:
XP_005 YCDQLPP-RSDFYPAIGDICCAQFSEDDQWYRASVLAYASEESVLVGYVDYGNFEILSLM
530 540 550 560 570 580
780 790 800 810 820 830
pF1KB4 RLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHLSA
:: . : . :: :: . ..: .. :. .:. . . .::
XP_005 RLCPIIPKLLE--LPMQAIKCVLAGVK-PSLGIWTPEAICLMKKLVQNKIITVKVVDKLE
590 600 610 620 630 640
840 850 860 870 880 890
pF1KB4 GCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRY
XP_005 NSSLVELIDKSETPHVSVSKVLLDAGFAVGEQSMVTDKPSDVKETSVPLGVEGKVNPLEW
650 660 670 680 690 700
>>XP_011538265 (OMIM: 605796) PREDICTED: tudor domain-co (1180 aa)
initn: 338 init1: 114 opt: 204 Z-score: 233.0 bits: 54.7 E(85289): 3.1e-06
Smith-Waterman score: 211; 30.2% identity (60.4% similar) in 149 aa overlap (687-830:270-412)
660 670 680 690 700 710
pF1KB4 VWAHYEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQ--DVETGTQLEKLMENM
:::. :::: . :. ...: ..
XP_011 TKEIAIWAERIMFSDLRSLQLKKTMEIKGTVTEFKHPGDFYVQLYSSEVLEYMNQLSASL
240 250 260 270 280 290
720 730 740 750 760 770
pF1KB4 RNDIAS-HPPVEGSYAPRRGEFCIAKF-VDGEWYRARVEKVE-SPAKIHVFYIDYGNREV
.. :. : : .: : .:: ::::. :: : :: ...:. . : ::.::::::.:.
XP_011 KETYANVH---EKDYIPVKGEVCIAKYTVDQTWNRAIIQNVDVQQKKAHVLYIDYGNEEI
300 310 320 330 340 350
780 790 800 810 820 830
pF1KB4 LPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVE
.: .:. :. .. ..: : . :. .: . . .: . .. ... : ...
XP_011 IPLNRIYHLNRNID--LFPPCAIK-CFVANVIPAEGNWSSDCIKATKPLLMEQYCSIKIV
360 370 380 390 400 410
840 850 860 870 880 890
pF1KB4 HLSAGCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLN
XP_011 DILEEEVVTFAVEVELPNSGKLLDHVLIEMGYGLKPSGQDSKKENADQSDPEDVGKMTTE
420 430 440 450 460 470
>--
initn: 323 init1: 114 opt: 203 Z-score: 231.8 bits: 54.5 E(85289): 3.6e-06
Smith-Waterman score: 203; 29.7% identity (58.0% similar) in 138 aa overlap (687-823:500-633)
660 670 680 690 700 710
pF1KB4 VWAHYEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRN
:..: :. :....: .: .:. .. .
XP_011 MTTENNIVVDKSDLIPKVLTLNVGDEFCGVVAHIQTPEDFFCQQLQSGRKLAELQASLSK
470 480 490 500 510 520
720 730 740 750 760 770
pF1KB4 DIASHPPVEGSYAPRRGEFCIAKFV-DGEWYRARVEKVESPAKIHVFYIDYGNREVLPST
. :: .... : :..: :.: : .:::: : : .. : :.:::: :.:
XP_011 YCDQLPP-RSDFYPAIGDICCAQFSEDDQWYRASVLAYASEESVLVGYVDYGNFEILSLM
530 540 550 560 570 580
780 790 800 810 820 830
pF1KB4 RLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHLSA
:: . : . :: :: . ..: .. :. .:. . . .::
XP_011 RLCPIIPKLLE--LPMQAIKCVLAGVK-PSLGIWTPEAICLMKKLVQNKIITVKVVDKLE
590 600 610 620 630 640
840 850 860 870 880 890
pF1KB4 GCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRY
XP_011 NSSLVELIDKSETPHVSVSKVLLDAGFAVGEQSMVTDKPSDVKETSVPLGVEGKVNPLEW
650 660 670 680 690 700
>>XP_005270035 (OMIM: 605796) PREDICTED: tudor domain-co (1189 aa)
initn: 338 init1: 114 opt: 204 Z-score: 232.9 bits: 54.7 E(85289): 3.1e-06
Smith-Waterman score: 211; 30.2% identity (60.4% similar) in 149 aa overlap (687-830:270-412)
660 670 680 690 700 710
pF1KB4 VWAHYEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQ--DVETGTQLEKLMENM
:::. :::: . :. ...: ..
XP_005 TKEIAIWAERIMFSDLRSLQLKKTMEIKGTVTEFKHPGDFYVQLYSSEVLEYMNQLSASL
240 250 260 270 280 290
720 730 740 750 760 770
pF1KB4 RNDIAS-HPPVEGSYAPRRGEFCIAKF-VDGEWYRARVEKVE-SPAKIHVFYIDYGNREV
.. :. : : .: : .:: ::::. :: : :: ...:. . : ::.::::::.:.
XP_005 KETYANVH---EKDYIPVKGEVCIAKYTVDQTWNRAIIQNVDVQQKKAHVLYIDYGNEEI
300 310 320 330 340 350
780 790 800 810 820 830
pF1KB4 LPSTRLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVE
.: .:. :. .. ..: : . :. .: . . .: . .. ... : ...
XP_005 IPLNRIYHLNRNID--LFPPCAIK-CFVANVIPAEGNWSSDCIKATKPLLMEQYCSIKIV
360 370 380 390 400 410
840 850 860 870 880 890
pF1KB4 HLSAGCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLN
XP_005 DILEEEVVTFAVEVELPNSGKLLDHVLIEMGYGLKPSGQDSKKENADQSDPEDVGKMTTE
420 430 440 450 460 470
>--
initn: 323 init1: 114 opt: 203 Z-score: 231.7 bits: 54.5 E(85289): 3.6e-06
Smith-Waterman score: 203; 29.7% identity (58.0% similar) in 138 aa overlap (687-823:500-633)
660 670 680 690 700 710
pF1KB4 VWAHYEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRN
:..: :. :....: .: .:. .. .
XP_005 MTTENNIVVDKSDLIPKVLTLNVGDEFCGVVAHIQTPEDFFCQQLQSGRKLAELQASLSK
470 480 490 500 510 520
720 730 740 750 760 770
pF1KB4 DIASHPPVEGSYAPRRGEFCIAKFV-DGEWYRARVEKVESPAKIHVFYIDYGNREVLPST
. :: .... : :..: :.: : .:::: : : .. : :.:::: :.:
XP_005 YCDQLPP-RSDFYPAIGDICCAQFSEDDQWYRASVLAYASEESVLVGYVDYGNFEILSLM
530 540 550 560 570 580
780 790 800 810 820 830
pF1KB4 RLGTLSPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHLSA
:: . : . :: :: . ..: .. :. .:. . . .::
XP_005 RLCPIIPKLLE--LPMQAIKCVLAGVK-PSLGIWTPEAICLMKKLVQNKIITVKVVDKLE
590 600 610 620 630 640
840 850 860 870 880 890
pF1KB4 GCPHVTLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRY
XP_005 NSSLVELIDKSETPHVSVSKVLLDAGFAVGEQSMVTDKPSDVKETSVPLGVEGKVNPLEW
650 660 670 680 690 700
910 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 15:08:16 2016 done: Thu Nov 3 15:08:18 2016
Total Scan time: 11.920 Total Display time: 0.150
Function used was FASTA [36.3.4 Apr, 2011]