FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4563, 910 aa
  1>>>pF1KB4563 910 - 910 aa - 910 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6181+/-0.000981; mu= 19.2914+/- 0.059
 mean_var=69.3689+/-13.815, 0's: 0 Z-trim(104.6): 25  B-trim: 75 in 1/49
 Lambda= 0.153990
 statistics sampled from 7949 (7964) to 7949 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.603), E-opt: 0.2 (0.245), width:  16
 Scan time:  3.740

The best scores are:                                      opt bits E(32554)
CCDS34747.1 SND1 gene_id:27044|Hs108|chr7          ( 910) 5972 1336.5       0


>>CCDS34747.1 SND1 gene_id:27044|Hs108|chr7               (910 aa)
 initn: 5972 init1: 5972 opt: 5972  Z-score: 7162.2  bits: 1336.5 E(32554):    0
Smith-Waterman score: 5972; 99.9% identity (99.9% similar) in 910 aa overlap (1-910:1-910)

               10        20        30        40        50        60
pF1KB4 MASSAQSGGSSGGPAVPTVQRGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MASSAQSGGSSGGPAVPTVQRGIIKMVLSGCAIIVRGQPRGGPPPERQINLSNIRAGNLA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 RRAAATQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGREYGMIYLGKDTNG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 RRAAATQPDAKDTPDEPWAFPAREFLRKKLIGKEVCFTIENKTPQGREYGMIYLGKDTNG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 ENIAESLVAEGLATRREGMRANNPEQNRLSECEEQAKAAKKGMWSEGNGSHTIRDLKYTI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ENIAESLVAEGLATRREGMRANNPEQNRLSECEEQAKAAKKGMWSEGNGSHTIRDLKYTI
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 ENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTVMLSGIKCPTFRREADGSET
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 ENPRHFVDSHHQKPVNAIIEHVRDGSVVRALLLPDYYLVTVMLSGIKCPTFRREADGSET
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 PEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGTILHPNGNITELLLKEGFARCVDWS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PEPFAAEAKFFTESRLLQRDVQIILESCHNQNILGTILHPNGNITELLLKEGFARCVDWS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 IAVYTRGAEKLRAAERVAKERRLRIWRDYVAPTANLDQKDKQFVAKVMQVLNADAIVVKL
       :::::::::::::::: :::::::::::::::::::::::::::::::::::::::::::
CCDS34 IAVYTRGAEKLRAAERFAKERRLRIWRDYVAPTANLDQKDKQFVAKVMQVLNADAIVVKL
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 NSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGKKVNVTVD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 NSGDYKTIHLSSIRPPRLEGENTQDKNKKLRPLYDIPYMFEAREFLRKKLIGKKVNVTVD
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 YIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YIRPASPATETVPAFSERTCATVTIGGINIAEALVSKGLATVIRYRQDDDQRSSHYDELL
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB4 AAEARAIKNGKGLHSKKEVPIHRVADISGDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 AAEARAIKNGKGLHSKKEVPIHRVADISGDTQKAKQFLPFLQRAGRSEAVVEYVFSGSRL
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB4 KLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVEVEVES
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 KLYLPKETCLITFLLAGIECPRGARNLPGLVQEGEPFSEEATLFTKELVLQREVEVEVES
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KB4 MDKAGNFIGWLHIDGANLSVLLVEHALSKVHFTAERSSYYKSLLSAEEAAKQKKEKVWAH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MDKAGNFIGWLHIDGANLSVLLVEHALSKVHFTAERSSYYKSLLSAEEAAKQKKEKVWAH
              610       620       630       640       650       660

              670       680       690       700       710       720
pF1KB4 YEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YEEQPVEEVMPVLEEKERSASYKPVFVTEITDDLHFYVQDVETGTQLEKLMENMRNDIAS
              670       680       690       700       710       720

              730       740       750       760       770       780
pF1KB4 HPPVEGSYAPRRGEFCIAKFVDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 HPPVEGSYAPRRGEFCIAKFVDGEWYRARVEKVESPAKIHVFYIDYGNREVLPSTRLGTL
              730       740       750       760       770       780

              790       800       810       820       830       840
pF1KB4 SPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHLSAGCPHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 SPAFSTRVLPAQATEYAFAFIQVPQDDDARTDAVDSVVRDIQNTQCLLNVEHLSAGCPHV
              790       800       810       820       830       840

              850       860       870       880       890       900
pF1KB4 TLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRYGDFRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 TLQFADSKGDVGLGLVKEGLVMVEVRKEKQFQKVITEYLNAQESAKSARLNLWRYGDFRA
              850       860       870       880       890       900

              910
pF1KB4 DDADEFGYSR
       ::::::::::
CCDS34 DDADEFGYSR
              910




910 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 15:08:15 2016 done: Thu Nov  3 15:08:16 2016
 Total Scan time:  3.740 Total Display time:  0.030

Function used was FASTA [36.3.4 Apr, 2011]