Result of FASTA (omim) for
pF1KB4553
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4553, 145 aa
1>>>pF1KB4553 145 - 145 aa - 145 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8265+/-0.000315; mu= 14.1864+/- 0.020
mean_var=56.7175+/-11.536, 0's: 0 Z-trim(115.5): 32 B-trim: 684 in 1/53
Lambda= 0.170300
statistics sampled from 25941 (25966) to 25941 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.709), E-opt: 0.2 (0.304), width: 16
Scan time: 4.620
The best scores are: opt bits E(85289)
NP_001305696 (OMIM: 611827) 39S ribosomal protein ( 145) 981 248.5 2.7e-66
NP_115487 (OMIM: 611827) 39S ribosomal protein L14 ( 145) 981 248.5 2.7e-66
NP_001305697 (OMIM: 611827) 39S ribosomal protein ( 145) 981 248.5 2.7e-66
NP_001305698 (OMIM: 611827) 39S ribosomal protein ( 156) 981 248.6 2.9e-66
NP_001305699 (OMIM: 611827) 39S ribosomal protein ( 198) 981 248.6 3.5e-66
NP_001305700 (OMIM: 611827) 39S ribosomal protein ( 111) 742 189.8 1e-48
>>NP_001305696 (OMIM: 611827) 39S ribosomal protein L14, (145 aa)
initn: 981 init1: 981 opt: 981 Z-score: 1311.1 bits: 248.5 E(85289): 2.7e-66
Smith-Waterman score: 981; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)
10 20 30 40 50 60
pF1KB4 MAFFTGLWGPFTCVSRVLSHHCFSTTGSLSAIQKMTRVRVVDNSALGNSPYHRAPRCIHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAFFTGLWGPFTCVSRVLSHHCFSTTGSLSAIQKMTRVRVVDNSALGNSPYHRAPRCIHV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 YKKNGVGKVGDQILLAIKGQKKKALIVGHCMPGPRMTPRFDSNNVVLIEDNGNPVGTRIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YKKNGVGKVGDQILLAIKGQKKKALIVGHCMPGPRMTPRFDSNNVVLIEDNGNPVGTRIK
70 80 90 100 110 120
130 140
pF1KB4 TPIPTSLRKREGEYSKVLAIAQNFV
:::::::::::::::::::::::::
NP_001 TPIPTSLRKREGEYSKVLAIAQNFV
130 140
>>NP_115487 (OMIM: 611827) 39S ribosomal protein L14, mi (145 aa)
initn: 981 init1: 981 opt: 981 Z-score: 1311.1 bits: 248.5 E(85289): 2.7e-66
Smith-Waterman score: 981; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)
10 20 30 40 50 60
pF1KB4 MAFFTGLWGPFTCVSRVLSHHCFSTTGSLSAIQKMTRVRVVDNSALGNSPYHRAPRCIHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 MAFFTGLWGPFTCVSRVLSHHCFSTTGSLSAIQKMTRVRVVDNSALGNSPYHRAPRCIHV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 YKKNGVGKVGDQILLAIKGQKKKALIVGHCMPGPRMTPRFDSNNVVLIEDNGNPVGTRIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_115 YKKNGVGKVGDQILLAIKGQKKKALIVGHCMPGPRMTPRFDSNNVVLIEDNGNPVGTRIK
70 80 90 100 110 120
130 140
pF1KB4 TPIPTSLRKREGEYSKVLAIAQNFV
:::::::::::::::::::::::::
NP_115 TPIPTSLRKREGEYSKVLAIAQNFV
130 140
>>NP_001305697 (OMIM: 611827) 39S ribosomal protein L14, (145 aa)
initn: 981 init1: 981 opt: 981 Z-score: 1311.1 bits: 248.5 E(85289): 2.7e-66
Smith-Waterman score: 981; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)
10 20 30 40 50 60
pF1KB4 MAFFTGLWGPFTCVSRVLSHHCFSTTGSLSAIQKMTRVRVVDNSALGNSPYHRAPRCIHV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAFFTGLWGPFTCVSRVLSHHCFSTTGSLSAIQKMTRVRVVDNSALGNSPYHRAPRCIHV
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 YKKNGVGKVGDQILLAIKGQKKKALIVGHCMPGPRMTPRFDSNNVVLIEDNGNPVGTRIK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YKKNGVGKVGDQILLAIKGQKKKALIVGHCMPGPRMTPRFDSNNVVLIEDNGNPVGTRIK
70 80 90 100 110 120
130 140
pF1KB4 TPIPTSLRKREGEYSKVLAIAQNFV
:::::::::::::::::::::::::
NP_001 TPIPTSLRKREGEYSKVLAIAQNFV
130 140
>>NP_001305698 (OMIM: 611827) 39S ribosomal protein L14, (156 aa)
initn: 981 init1: 981 opt: 981 Z-score: 1310.7 bits: 248.6 E(85289): 2.9e-66
Smith-Waterman score: 981; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:12-156)
10 20 30 40
pF1KB4 MAFFTGLWGPFTCVSRVLSHHCFSTTGSLSAIQKMTRVRVVDNSALGNS
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MNFATDLSWDPMAFFTGLWGPFTCVSRVLSHHCFSTTGSLSAIQKMTRVRVVDNSALGNS
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB4 PYHRAPRCIHVYKKNGVGKVGDQILLAIKGQKKKALIVGHCMPGPRMTPRFDSNNVVLIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PYHRAPRCIHVYKKNGVGKVGDQILLAIKGQKKKALIVGHCMPGPRMTPRFDSNNVVLIE
70 80 90 100 110 120
110 120 130 140
pF1KB4 DNGNPVGTRIKTPIPTSLRKREGEYSKVLAIAQNFV
::::::::::::::::::::::::::::::::::::
NP_001 DNGNPVGTRIKTPIPTSLRKREGEYSKVLAIAQNFV
130 140 150
>>NP_001305699 (OMIM: 611827) 39S ribosomal protein L14, (198 aa)
initn: 981 init1: 981 opt: 981 Z-score: 1309.1 bits: 248.6 E(85289): 3.5e-66
Smith-Waterman score: 981; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:54-198)
10 20 30
pF1KB4 MAFFTGLWGPFTCVSRVLSHHCFSTTGSLS
::::::::::::::::::::::::::::::
NP_001 RRKTVHCSSLEILYVLLKNKDFIEDLSWDPMAFFTGLWGPFTCVSRVLSHHCFSTTGSLS
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB4 AIQKMTRVRVVDNSALGNSPYHRAPRCIHVYKKNGVGKVGDQILLAIKGQKKKALIVGHC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AIQKMTRVRVVDNSALGNSPYHRAPRCIHVYKKNGVGKVGDQILLAIKGQKKKALIVGHC
90 100 110 120 130 140
100 110 120 130 140
pF1KB4 MPGPRMTPRFDSNNVVLIEDNGNPVGTRIKTPIPTSLRKREGEYSKVLAIAQNFV
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPGPRMTPRFDSNNVVLIEDNGNPVGTRIKTPIPTSLRKREGEYSKVLAIAQNFV
150 160 170 180 190
>>NP_001305700 (OMIM: 611827) 39S ribosomal protein L14, (111 aa)
initn: 742 init1: 742 opt: 742 Z-score: 995.5 bits: 189.8 E(85289): 1e-48
Smith-Waterman score: 742; 100.0% identity (100.0% similar) in 111 aa overlap (35-145:1-111)
10 20 30 40 50 60
pF1KB4 TGLWGPFTCVSRVLSHHCFSTTGSLSAIQKMTRVRVVDNSALGNSPYHRAPRCIHVYKKN
::::::::::::::::::::::::::::::
NP_001 MTRVRVVDNSALGNSPYHRAPRCIHVYKKN
10 20 30
70 80 90 100 110 120
pF1KB4 GVGKVGDQILLAIKGQKKKALIVGHCMPGPRMTPRFDSNNVVLIEDNGNPVGTRIKTPIP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVGKVGDQILLAIKGQKKKALIVGHCMPGPRMTPRFDSNNVVLIEDNGNPVGTRIKTPIP
40 50 60 70 80 90
130 140
pF1KB4 TSLRKREGEYSKVLAIAQNFV
:::::::::::::::::::::
NP_001 TSLRKREGEYSKVLAIAQNFV
100 110
145 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:54:39 2016 done: Sat Nov 5 05:54:40 2016
Total Scan time: 4.620 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]