FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4553, 145 aa
  1>>>pF1KB4553 145 - 145 aa - 145 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0568+/-0.000669; mu= 12.7625+/- 0.040
 mean_var=56.4016+/-11.075, 0's: 0 Z-trim(109.0): 14  B-trim: 8 in 1/50
 Lambda= 0.170777
 statistics sampled from 10548 (10558) to 10548 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.726), E-opt: 0.2 (0.324), width:  16
 Scan time:  1.540

The best scores are:                                      opt bits E(32554)
CCDS34460.1 MRPL14 gene_id:64928|Hs108|chr6        ( 145)  981 249.2 6.7e-67


>>CCDS34460.1 MRPL14 gene_id:64928|Hs108|chr6             (145 aa)
 initn: 981 init1: 981 opt: 981  Z-score: 1314.5  bits: 249.2 E(32554): 6.7e-67
Smith-Waterman score: 981; 100.0% identity (100.0% similar) in 145 aa overlap (1-145:1-145)

               10        20        30        40        50        60
pF1KB4 MAFFTGLWGPFTCVSRVLSHHCFSTTGSLSAIQKMTRVRVVDNSALGNSPYHRAPRCIHV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MAFFTGLWGPFTCVSRVLSHHCFSTTGSLSAIQKMTRVRVVDNSALGNSPYHRAPRCIHV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 YKKNGVGKVGDQILLAIKGQKKKALIVGHCMPGPRMTPRFDSNNVVLIEDNGNPVGTRIK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 YKKNGVGKVGDQILLAIKGQKKKALIVGHCMPGPRMTPRFDSNNVVLIEDNGNPVGTRIK
               70        80        90       100       110       120

              130       140     
pF1KB4 TPIPTSLRKREGEYSKVLAIAQNFV
       :::::::::::::::::::::::::
CCDS34 TPIPTSLRKREGEYSKVLAIAQNFV
              130       140     




145 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:54:39 2016 done: Sat Nov  5 05:54:39 2016
 Total Scan time:  1.540 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]