Result of FASTA (ccds) for
pF1KB4508
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4508, 389 aa
1>>>pF1KB4508 389 - 389 aa - 389 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.5019+/-0.00102; mu= 16.0868+/- 0.061
mean_var=71.1353+/-14.745, 0's: 0 Z-trim(104.4): 21 B-trim: 0 in 0/49
Lambda= 0.152066
statistics sampled from 7879 (7889) to 7879 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.598), E-opt: 0.2 (0.242), width: 16
Scan time: 2.810
The best scores are: opt bits E(32554)
CCDS11925.1 SLC14A1 gene_id:6563|Hs108|chr18 ( 389) 2629 586.1 1.8e-167
CCDS45860.1 SLC14A1 gene_id:6563|Hs108|chr18 ( 445) 2629 586.2 2e-167
CCDS82252.1 SLC14A1 gene_id:6563|Hs108|chr18 ( 284) 1912 428.7 3.1e-120
CCDS77181.1 SLC14A1 gene_id:6563|Hs108|chr18 ( 257) 1751 393.4 1.2e-109
CCDS11924.1 SLC14A2 gene_id:8170|Hs108|chr18 ( 920) 1729 388.9 1e-107
>>CCDS11925.1 SLC14A1 gene_id:6563|Hs108|chr18 (389 aa)
initn: 2629 init1: 2629 opt: 2629 Z-score: 3120.2 bits: 586.1 E(32554): 1.8e-167
Smith-Waterman score: 2629; 99.7% identity (100.0% similar) in 389 aa overlap (1-389:1-389)
10 20 30 40 50 60
pF1KB4 MEDSPTMVRVDSPTMVRGENQVSPCQGRRCFPKALGYVTGDMKELANQLKDKPVVLQFID
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 MEDSPTMVRVDSPTMVRGENQVSPCQGRRCFPKALGYVTGDMKELANQLKDKPVVLQFID
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 WILRGISQVVFVNNPVSGILILVGLLVQNPWWALTGWLGTVVSTLMALLLSQDRSLIASG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 WILRGISQVVFVNNPVSGILILVGLLVQNPWWALTGWLGTVVSTLMALLLSQDRSLIASG
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 LYGYNATLVGVLMAVFSDKGDYFWWLLLPVCAMSMTCPIFSSALNSMLSKWDLPVFTLPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 LYGYNATLVGVLMAVFSDKGDYFWWLLLPVCAMSMTCPIFSSALNSMLSKWDLPVFTLPF
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 NMALSMYLSATGHYNPFFPAKLVIPITTAPNISWSDLSALELLKSIPVGVGQIYGCDNPW
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 NMALSMYLSATGHYNPFFPAKLVIPITTAPNISWSDLSALELLKSIPVGVGQIYGCDNPW
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 TGGIFLGAILLSSPLMCLHAAIGSLLGIAAGLSLSAPFENIYFGLWGFNSSLACIAMGGM
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS11 TGGIFLGAILLSSPLMCLHAAIGSLLGIAAGLSLSAPFEDIYFGLWGFNSSLACIAMGGM
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 FMALTWQTHLLALGCALFTAYLGVGMANFMAEVGLPACTWPFCLATLLFLIMTTKNSNIY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS11 FMALTWQTHLLALGCALFTAYLGVGMANFMAEVGLPACTWPFCLATLLFLIMTTKNSNIY
310 320 330 340 350 360
370 380
pF1KB4 KMPLSKVTYPEENRIFYLQAKKRMVESPL
:::::::::::::::::::::::::::::
CCDS11 KMPLSKVTYPEENRIFYLQAKKRMVESPL
370 380
>>CCDS45860.1 SLC14A1 gene_id:6563|Hs108|chr18 (445 aa)
initn: 2629 init1: 2629 opt: 2629 Z-score: 3119.3 bits: 586.2 E(32554): 2e-167
Smith-Waterman score: 2629; 99.7% identity (100.0% similar) in 389 aa overlap (1-389:57-445)
10 20 30
pF1KB4 MEDSPTMVRVDSPTMVRGENQVSPCQGRRC
::::::::::::::::::::::::::::::
CCDS45 AGDAARRGIARLSLALADGSQEQEPEEEIAMEDSPTMVRVDSPTMVRGENQVSPCQGRRC
30 40 50 60 70 80
40 50 60 70 80 90
pF1KB4 FPKALGYVTGDMKELANQLKDKPVVLQFIDWILRGISQVVFVNNPVSGILILVGLLVQNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 FPKALGYVTGDMKELANQLKDKPVVLQFIDWILRGISQVVFVNNPVSGILILVGLLVQNP
90 100 110 120 130 140
100 110 120 130 140 150
pF1KB4 WWALTGWLGTVVSTLMALLLSQDRSLIASGLYGYNATLVGVLMAVFSDKGDYFWWLLLPV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 WWALTGWLGTVVSTLMALLLSQDRSLIASGLYGYNATLVGVLMAVFSDKGDYFWWLLLPV
150 160 170 180 190 200
160 170 180 190 200 210
pF1KB4 CAMSMTCPIFSSALNSMLSKWDLPVFTLPFNMALSMYLSATGHYNPFFPAKLVIPITTAP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 CAMSMTCPIFSSALNSMLSKWDLPVFTLPFNMALSMYLSATGHYNPFFPAKLVIPITTAP
210 220 230 240 250 260
220 230 240 250 260 270
pF1KB4 NISWSDLSALELLKSIPVGVGQIYGCDNPWTGGIFLGAILLSSPLMCLHAAIGSLLGIAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 NISWSDLSALELLKSIPVGVGQIYGCDNPWTGGIFLGAILLSSPLMCLHAAIGSLLGIAA
270 280 290 300 310 320
280 290 300 310 320 330
pF1KB4 GLSLSAPFENIYFGLWGFNSSLACIAMGGMFMALTWQTHLLALGCALFTAYLGVGMANFM
:::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GLSLSAPFEDIYFGLWGFNSSLACIAMGGMFMALTWQTHLLALGCALFTAYLGVGMANFM
330 340 350 360 370 380
340 350 360 370 380
pF1KB4 AEVGLPACTWPFCLATLLFLIMTTKNSNIYKMPLSKVTYPEENRIFYLQAKKRMVESPL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AEVGLPACTWPFCLATLLFLIMTTKNSNIYKMPLSKVTYPEENRIFYLQAKKRMVESPL
390 400 410 420 430 440
>>CCDS82252.1 SLC14A1 gene_id:6563|Hs108|chr18 (284 aa)
initn: 1912 init1: 1912 opt: 1912 Z-score: 2272.1 bits: 428.7 E(32554): 3.1e-120
Smith-Waterman score: 1912; 99.6% identity (100.0% similar) in 284 aa overlap (106-389:1-284)
80 90 100 110 120 130
pF1KB4 VSGILILVGLLVQNPWWALTGWLGTVVSTLMALLLSQDRSLIASGLYGYNATLVGVLMAV
::::::::::::::::::::::::::::::
CCDS82 MALLLSQDRSLIASGLYGYNATLVGVLMAV
10 20 30
140 150 160 170 180 190
pF1KB4 FSDKGDYFWWLLLPVCAMSMTCPIFSSALNSMLSKWDLPVFTLPFNMALSMYLSATGHYN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 FSDKGDYFWWLLLPVCAMSMTCPIFSSALNSMLSKWDLPVFTLPFNMALSMYLSATGHYN
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB4 PFFPAKLVIPITTAPNISWSDLSALELLKSIPVGVGQIYGCDNPWTGGIFLGAILLSSPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 PFFPAKLVIPITTAPNISWSDLSALELLKSIPVGVGQIYGCDNPWTGGIFLGAILLSSPL
100 110 120 130 140 150
260 270 280 290 300 310
pF1KB4 MCLHAAIGSLLGIAAGLSLSAPFENIYFGLWGFNSSLACIAMGGMFMALTWQTHLLALGC
::::::::::::::::::::::::.:::::::::::::::::::::::::::::::::::
CCDS82 MCLHAAIGSLLGIAAGLSLSAPFEDIYFGLWGFNSSLACIAMGGMFMALTWQTHLLALGC
160 170 180 190 200 210
320 330 340 350 360 370
pF1KB4 ALFTAYLGVGMANFMAEVGLPACTWPFCLATLLFLIMTTKNSNIYKMPLSKVTYPEENRI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 ALFTAYLGVGMANFMAEVGLPACTWPFCLATLLFLIMTTKNSNIYKMPLSKVTYPEENRI
220 230 240 250 260 270
380
pF1KB4 FYLQAKKRMVESPL
::::::::::::::
CCDS82 FYLQAKKRMVESPL
280
>>CCDS77181.1 SLC14A1 gene_id:6563|Hs108|chr18 (257 aa)
initn: 1751 init1: 1751 opt: 1751 Z-score: 2081.9 bits: 393.4 E(32554): 1.2e-109
Smith-Waterman score: 1751; 99.6% identity (100.0% similar) in 257 aa overlap (133-389:1-257)
110 120 130 140 150 160
pF1KB4 STLMALLLSQDRSLIASGLYGYNATLVGVLMAVFSDKGDYFWWLLLPVCAMSMTCPIFSS
::::::::::::::::::::::::::::::
CCDS77 MAVFSDKGDYFWWLLLPVCAMSMTCPIFSS
10 20 30
170 180 190 200 210 220
pF1KB4 ALNSMLSKWDLPVFTLPFNMALSMYLSATGHYNPFFPAKLVIPITTAPNISWSDLSALEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 ALNSMLSKWDLPVFTLPFNMALSMYLSATGHYNPFFPAKLVIPITTAPNISWSDLSALEL
40 50 60 70 80 90
230 240 250 260 270 280
pF1KB4 LKSIPVGVGQIYGCDNPWTGGIFLGAILLSSPLMCLHAAIGSLLGIAAGLSLSAPFENIY
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::.::
CCDS77 LKSIPVGVGQIYGCDNPWTGGIFLGAILLSSPLMCLHAAIGSLLGIAAGLSLSAPFEDIY
100 110 120 130 140 150
290 300 310 320 330 340
pF1KB4 FGLWGFNSSLACIAMGGMFMALTWQTHLLALGCALFTAYLGVGMANFMAEVGLPACTWPF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 FGLWGFNSSLACIAMGGMFMALTWQTHLLALGCALFTAYLGVGMANFMAEVGLPACTWPF
160 170 180 190 200 210
350 360 370 380
pF1KB4 CLATLLFLIMTTKNSNIYKMPLSKVTYPEENRIFYLQAKKRMVESPL
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS77 CLATLLFLIMTTKNSNIYKMPLSKVTYPEENRIFYLQAKKRMVESPL
220 230 240 250
>>CCDS11924.1 SLC14A2 gene_id:8170|Hs108|chr18 (920 aa)
initn: 3497 init1: 1721 opt: 1729 Z-score: 2047.5 bits: 388.9 E(32554): 1e-107
Smith-Waterman score: 1729; 62.3% identity (87.9% similar) in 387 aa overlap (1-383:524-906)
10 20
pF1KB4 MEDSPTM---VRVDSPTMVRGENQVSPCQG
::.: . . ... . .:. .: :
CCDS11 GKGEHQERQNKDPFPYRYRKPTVELLDLDTMEESSEIKVETNISKTSWIRSSMAAS---G
500 510 520 530 540 550
30 40 50 60 70 80
pF1KB4 RRCFPKALGYVTGDMKELANQLKDKPVVLQFIDWILRGISQVVFVNNPVSGILILVGLLV
.: :::.:.::.::: .. :::: :.::.::.::: :::.:::::.:::::..::..
CCDS11 KRV-SKALSYITGEMKECGEGLKDKSPVFQFFDWVLRGTSQVMFVNNPLSGILIILGLFI
560 570 580 590 600
90 100 110 120 130 140
pF1KB4 QNPWWALTGWLGTVVSTLMALLLSQDRSLIASGLYGYNATLVGVLMAVFSDKGDYFWWLL
::::::..: :::..::: ::.::::.: ::.:..:::..:::.:::::::::::.::::
CCDS11 QNPWWAISGCLGTIMSTLTALILSQDKSAIAAGFHGYNGVLVGLLMAVFSDKGDYYWWLL
610 620 630 640 650 660
150 160 170 180 190 200
pF1KB4 LPVCAMSMTCPIFSSALNSMLSKWDLPVFTLPFNMALSMYLSATGHYNPFFPAKLVIPIT
::: :::.:::.::::....:::::::::::::.....::.:::::: :::. :. : .
CCDS11 LPVIIMSMSCPILSSALGTIFSKWDLPVFTLPFNITVTLYLAATGHYNLFFPTTLLQPAS
670 680 690 700 710 720
210 220 230 240 250 260
pF1KB4 TAPNISWSDLSALELLKSIPVGVGQIYGCDNPWTGGIFLGAILLSSPLMCLHAAIGSLLG
. :::.::.... ::..::::.::.::::::::::::: :...::::.:::::::: .:
CCDS11 AMPNITWSEVQVPLLLRAIPVGIGQVYGCDNPWTGGIFLIALFISSPLICLHAAIGSTMG
730 740 750 760 770 780
270 280 290 300 310 320
pF1KB4 IAAGLSLSAPFENIYFGLWGFNSSLACIAMGGMFMALTWQTHLLALGCALFTAYLGVGMA
. :.:....::..::::: ::::.:::::.::::...::::::::..::::.::::...:
CCDS11 MLAALTIATPFDSIYFGLCGFNSTLACIAIGGMFYVITWQTHLLAIACALFAAYLGAALA
790 800 810 820 830 840
330 340 350 360 370 380
pF1KB4 NFMAEVGLPACTWPFCLATLLFLIMTTKNSNIYKMPLSKVTYPEENRIFYL-QAKKRMVE
:... ::: :::::::..: ::..::.: :::.::::::::: :::.:: : ..:
CCDS11 NMLSVFGLPPCTWPFCLSALTFLLLTTNNPAIYKLPLSKVTYPEANRIYYLSQERNRRAS
850 860 870 880 890 900
pF1KB4 SPL
CCDS11 IITKYQAYDVS
910 920
>--
initn: 1822 init1: 1681 opt: 1696 Z-score: 2008.3 bits: 381.6 E(32554): 1.5e-105
Smith-Waterman score: 1696; 65.0% identity (88.5% similar) in 357 aa overlap (27-381:85-441)
10 20 30 40 50
pF1KB4 MEDSPTMVRVDSPTMVRGENQVSPCQGRRC--FPKALGYVTGDMKELANQLKDKPV
:.:: . ::.::.:::::: :::: .
CCDS11 SNEDSHIVKIEKLNERSKRKDDGVAHRDSAGQRCICLSKAVGYLTGDMKEYRIWLKDKHL
60 70 80 90 100 110
60 70 80 90 100 110
pF1KB4 VLQFIDWILRGISQVVFVNNPVSGILILVGLLVQNPWWALTGWLGTVVSTLMALLLSQDR
.::::::.::: .::.:.:::.::..:..:::.:::::..:: :::::::: :: :.:::
CCDS11 ALQFIDWVLRGTAQVMFINNPLSGLIIFIGLLIQNPWWTITGGLGTVVSTLTALALGQDR
120 130 140 150 160 170
120 130 140 150 160 170
pF1KB4 SLIASGLYGYNATLVGVLMAVFSDKGDYFWWLLLPVCAMSMTCPIFSSALNSMLSKWDLP
: :::::.:::. :::.::::::.: ::.::::.:: .:.::..::::::..::::::
CCDS11 SAIASGLHGYNGMLVGLLMAVFSEKLDYYWWLLFPVTFTAMSCPVLSSALNSIFSKWDLP
180 190 200 210 220 230
180 190 200 210 220 230
pF1KB4 VFTLPFNMALSMYLSATGHYNPFFPAKLVIPITTAPNISWSDLSALELLKSIPVGVGQIY
:::::::.:...::.:::::: :::. :: :....:::.:... ::..:::::::.:
CCDS11 VFTLPFNIAVTLYLAATGHYNLFFPTTLVEPVSSVPNITWTEMEMPLLLQAIPVGVGQVY
240 250 260 270 280 290
240 250 260 270 280 290
pF1KB4 GCDNPWTGGIFLGAILLSSPLMCLHAAIGSLLGIAAGLSLSAPFENIYFGLWGFNSSLAC
:::::::::.:: :...::::.::::::::..:. :.::...:::.:: :::..: :.:
CCDS11 GCDNPWTGGVFLVALFISSPLICLHAAIGSIVGLLAALSVATPFETIYTGLWSYNCVLSC
300 310 320 330 340 350
300 310 320 330 340 350
pF1KB4 IAMGGMFMALTWQTHLLALGCALFTAYLGVGMANFMAEVGLPACTWPFCLATLLFLIMTT
::.::::.::::::::::: :::: ::. ....:.:. ::.: :: :::::..::..::
CCDS11 IAIGGMFYALTWQTHLLALICALFCAYMEAAISNIMSVVGVPPGTWAFCLATIIFLLLTT
360 370 380 390 400 410
360 370 380
pF1KB4 KNSNIYKMPLSKVTYPEENRIFYLQAKKRMVESPL
.: :...::::::::: :::.:: .:
CCDS11 NNPAIFRLPLSKVTYPEANRIYYLTVKSGEEEKAPSGGGGEHPPTAGPKVEEGSEAVLSK
420 430 440 450 460 470
389 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:52:54 2016 done: Sat Nov 5 05:52:54 2016
Total Scan time: 2.810 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]