Result of FASTA (omim) for
pF1KB4415
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4415, 130 aa
1>>>pF1KB4415 130 - 130 aa - 130 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.0407+/-0.000325; mu= 12.0617+/- 0.020
mean_var=58.5877+/-11.573, 0's: 0 Z-trim(115.5): 45 B-trim: 214 in 1/52
Lambda= 0.167560
statistics sampled from 25987 (26043) to 25987 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.693), E-opt: 0.2 (0.305), width: 16
Scan time: 5.010
The best scores are: opt bits E(85289)
NP_003503 (OMIM: 602794) histone H2A type 1-C [Hom ( 130) 825 207.2 6.2e-54
NP_254280 (OMIM: 615015) histone H2A type 3 [Homo ( 130) 821 206.2 1.2e-53
NP_003507 (OMIM: 142720) histone H2A type 2-A [Hom ( 130) 819 205.7 1.7e-53
NP_003500 (OMIM: 602787) histone H2A type 1 [Homo ( 130) 818 205.5 2e-53
NP_003505 (OMIM: 602796) histone H2A type 1 [Homo ( 130) 818 205.5 2e-53
NP_003501 (OMIM: 602788) histone H2A type 1 [Homo ( 130) 818 205.5 2e-53
NP_066390 (OMIM: 602786) histone H2A type 1-B/E [H ( 130) 818 205.5 2e-53
NP_066408 (OMIM: 615012) histone H2A type 1 [Homo ( 130) 818 205.5 2e-53
NP_003504 (OMIM: 602795) histone H2A type 1-B/E [H ( 130) 818 205.5 2e-53
NP_003502 (OMIM: 602793) histone H2A type 1 [Homo ( 130) 818 205.5 2e-53
NP_066409 (OMIM: 602792) histone H2A type 1-D [Hom ( 130) 814 204.5 3.9e-53
NP_542163 (OMIM: 615013) histone H2A type 1-H [Hom ( 128) 804 202.1 2.1e-52
NP_066544 (OMIM: 602791) histone cluster 1, H2aj [ ( 128) 799 200.9 4.8e-52
NP_003508 (OMIM: 602797) histone H2A type 2-C [Hom ( 129) 789 198.5 2.6e-51
NP_778235 (OMIM: 615014) histone H2A type 2-B [Hom ( 130) 784 197.3 6e-51
NP_734466 (OMIM: 613499) histone H2A type 1-A [Hom ( 131) 781 196.5 9.9e-51
NP_002096 (OMIM: 601772) histone H2AX [Homo sapien ( 143) 739 186.4 1.2e-47
XP_011542037 (OMIM: 610054) PREDICTED: core histon ( 195) 495 127.5 9e-30
XP_011542036 (OMIM: 610054) PREDICTED: core histon ( 196) 495 127.5 9.1e-30
XP_005272192 (OMIM: 610054) PREDICTED: core histon ( 198) 495 127.5 9.1e-30
XP_005272191 (OMIM: 610054) PREDICTED: core histon ( 199) 495 127.5 9.2e-30
XP_016865558 (OMIM: 610054) PREDICTED: core histon ( 222) 495 127.5 1e-29
XP_016865557 (OMIM: 610054) PREDICTED: core histon ( 235) 495 127.5 1.1e-29
XP_016865556 (OMIM: 610054) PREDICTED: core histon ( 251) 495 127.5 1.1e-29
XP_011542035 (OMIM: 610054) PREDICTED: core histon ( 252) 495 127.6 1.1e-29
XP_011542034 (OMIM: 610054) PREDICTED: core histon ( 269) 495 127.6 1.2e-29
XP_011542033 (OMIM: 610054) PREDICTED: core histon ( 270) 495 127.6 1.2e-29
XP_005272189 (OMIM: 610054) PREDICTED: core histon ( 368) 495 127.6 1.5e-29
NP_613075 (OMIM: 610054) core histone macro-H2A.1 ( 369) 495 127.6 1.5e-29
NP_001035248 (OMIM: 610054) core histone macro-H2A ( 371) 495 127.6 1.6e-29
NP_004884 (OMIM: 610054) core histone macro-H2A.1 ( 371) 495 127.6 1.6e-29
XP_011542032 (OMIM: 610054) PREDICTED: core histon ( 371) 495 127.6 1.6e-29
NP_613258 (OMIM: 610054) core histone macro-H2A.1 ( 372) 495 127.6 1.6e-29
XP_011542031 (OMIM: 610054) PREDICTED: core histon ( 372) 495 127.6 1.6e-29
NP_061119 (OMIM: 616141) core histone macro-H2A.2 ( 372) 485 125.2 8.3e-29
NP_002097 (OMIM: 142763) histone H2A.Z [Homo sapie ( 128) 451 116.8 1e-26
NP_542451 (OMIM: 300445) histone H2A-Bbd type 2/3 ( 115) 302 80.7 6.4e-16
XP_011531366 (OMIM: 135300,182530,610733) PREDICTE (1276) 158 46.4 0.00015
XP_005264572 (OMIM: 135300,182530,610733) PREDICTE (1318) 158 46.5 0.00015
XP_011531364 (OMIM: 135300,182530,610733) PREDICTE (1326) 158 46.5 0.00015
NP_005624 (OMIM: 135300,182530,610733) son of seve (1333) 158 46.5 0.00015
NP_008870 (OMIM: 601247,616559) son of sevenless h (1332) 136 41.1 0.0061
>>NP_003503 (OMIM: 602794) histone H2A type 1-C [Homo sa (130 aa)
initn: 825 init1: 825 opt: 825 Z-score: 1089.3 bits: 207.2 E(85289): 6.2e-54
Smith-Waterman score: 825; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KB4 TESHHKAKGK
::::::::::
NP_003 TESHHKAKGK
130
>>NP_254280 (OMIM: 615015) histone H2A type 3 [Homo sapi (130 aa)
initn: 821 init1: 821 opt: 821 Z-score: 1084.0 bits: 206.2 E(85289): 1.2e-53
Smith-Waterman score: 821; 99.2% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
NP_254 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_254 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KB4 TESHHKAKGK
::::::::::
NP_254 TESHHKAKGK
130
>>NP_003507 (OMIM: 142720) histone H2A type 2-A [Homo sa (130 aa)
initn: 819 init1: 819 opt: 819 Z-score: 1081.4 bits: 205.7 E(85289): 1.7e-53
Smith-Waterman score: 819; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
NP_003 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KB4 TESHHKAKGK
::::::::::
NP_003 TESHHKAKGK
130
>>NP_003500 (OMIM: 602787) histone H2A type 1 [Homo sapi (130 aa)
initn: 818 init1: 818 opt: 818 Z-score: 1080.1 bits: 205.5 E(85289): 2e-53
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KB4 TESHHKAKGK
::::::::::
NP_003 TESHHKAKGK
130
>>NP_003505 (OMIM: 602796) histone H2A type 1 [Homo sapi (130 aa)
initn: 818 init1: 818 opt: 818 Z-score: 1080.1 bits: 205.5 E(85289): 2e-53
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KB4 TESHHKAKGK
::::::::::
NP_003 TESHHKAKGK
130
>>NP_003501 (OMIM: 602788) histone H2A type 1 [Homo sapi (130 aa)
initn: 818 init1: 818 opt: 818 Z-score: 1080.1 bits: 205.5 E(85289): 2e-53
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KB4 TESHHKAKGK
::::::::::
NP_003 TESHHKAKGK
130
>>NP_066390 (OMIM: 602786) histone H2A type 1-B/E [Homo (130 aa)
initn: 818 init1: 818 opt: 818 Z-score: 1080.1 bits: 205.5 E(85289): 2e-53
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::.:::::::::::::::::::
NP_066 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_066 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KB4 TESHHKAKGK
::::::::::
NP_066 TESHHKAKGK
130
>>NP_066408 (OMIM: 615012) histone H2A type 1 [Homo sapi (130 aa)
initn: 818 init1: 818 opt: 818 Z-score: 1080.1 bits: 205.5 E(85289): 2e-53
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
NP_066 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_066 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KB4 TESHHKAKGK
::::::::::
NP_066 TESHHKAKGK
130
>>NP_003504 (OMIM: 602795) histone H2A type 1-B/E [Homo (130 aa)
initn: 818 init1: 818 opt: 818 Z-score: 1080.1 bits: 205.5 E(85289): 2e-53
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::.:::::::::::::::::::
NP_003 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KB4 TESHHKAKGK
::::::::::
NP_003 TESHHKAKGK
130
>>NP_003502 (OMIM: 602793) histone H2A type 1 [Homo sapi (130 aa)
initn: 818 init1: 818 opt: 818 Z-score: 1080.1 bits: 205.5 E(85289): 2e-53
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
NP_003 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
NP_003 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KB4 TESHHKAKGK
::::::::::
NP_003 TESHHKAKGK
130
130 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 14:58:37 2016 done: Thu Nov 3 14:58:38 2016
Total Scan time: 5.010 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]