Result of FASTA (ccds) for
pF1KB4415
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4415, 130 aa
1>>>pF1KB4415 130 - 130 aa - 130 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7735+/-0.000719; mu= 13.4848+/- 0.043
mean_var=57.9526+/-11.496, 0's: 0 Z-trim(108.9): 39 B-trim: 148 in 1/49
Lambda= 0.168476
statistics sampled from 10508 (10551) to 10508 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.71), E-opt: 0.2 (0.324), width: 16
Scan time: 1.720
The best scores are: opt bits E(32554)
CCDS4585.1 HIST1H2AC gene_id:8334|Hs108|chr6 ( 130) 825 208.1 1.2e-54
CCDS1573.1 HIST3H2A gene_id:92815|Hs108|chr1 ( 130) 821 207.1 2.4e-54
CCDS30849.1 HIST2H2AA4 gene_id:723790|Hs108|chr1 ( 130) 819 206.6 3.4e-54
CCDS934.1 HIST2H2AA3 gene_id:8337|Hs108|chr1 ( 130) 819 206.6 3.4e-54
CCDS4639.1 HIST1H2AM gene_id:8336|Hs108|chr6 ( 130) 818 206.4 4.1e-54
CCDS4632.1 HIST1H2AK gene_id:8330|Hs108|chr6 ( 130) 818 206.4 4.1e-54
CCDS4574.1 HIST1H2AB gene_id:8335|Hs108|chr6 ( 130) 818 206.4 4.1e-54
CCDS4595.1 HIST1H2AE gene_id:3012|Hs108|chr6 ( 130) 818 206.4 4.1e-54
CCDS4634.1 HIST1H2AL gene_id:8332|Hs108|chr6 ( 130) 818 206.4 4.1e-54
CCDS4619.1 HIST1H2AG gene_id:8969|Hs108|chr6 ( 130) 818 206.4 4.1e-54
CCDS4626.1 HIST1H2AI gene_id:8329|Hs108|chr6 ( 130) 818 206.4 4.1e-54
CCDS4591.1 HIST1H2AD gene_id:3013|Hs108|chr6 ( 130) 814 205.4 8e-54
CCDS4622.1 HIST1H2AH gene_id:85235|Hs108|chr6 ( 128) 804 203.0 4.2e-53
CCDS4628.1 HIST1H2AJ gene_id:8331|Hs108|chr6 ( 128) 799 201.8 9.8e-53
CCDS937.1 HIST2H2AC gene_id:8338|Hs108|chr1 ( 129) 789 199.3 5.3e-52
CCDS938.1 HIST2H2AB gene_id:317772|Hs108|chr1 ( 130) 784 198.1 1.2e-51
CCDS4562.1 HIST1H2AA gene_id:221613|Hs108|chr6 ( 131) 781 197.4 2.1e-51
CCDS31752.1 H2AFJ gene_id:55766|Hs108|chr12 ( 129) 772 195.2 9.3e-51
CCDS8410.1 H2AFX gene_id:3014|Hs108|chr11 ( 143) 739 187.2 2.6e-48
CCDS4184.1 H2AFY gene_id:9555|Hs108|chr5 ( 369) 495 128.2 4e-30
CCDS4183.1 H2AFY gene_id:9555|Hs108|chr5 ( 371) 495 128.2 4e-30
CCDS4185.1 H2AFY gene_id:9555|Hs108|chr5 ( 372) 495 128.2 4.1e-30
CCDS7296.1 H2AFY2 gene_id:55506|Hs108|chr10 ( 372) 485 125.8 2.2e-29
CCDS5496.1 H2AFV gene_id:94239|Hs108|chr7 ( 128) 455 118.2 1.5e-27
CCDS3654.1 H2AFZ gene_id:3015|Hs108|chr4 ( 128) 451 117.2 2.9e-27
CCDS5495.1 H2AFV gene_id:94239|Hs108|chr7 ( 114) 409 107.0 3.1e-24
CCDS5497.1 H2AFV gene_id:94239|Hs108|chr7 ( 102) 357 94.3 1.8e-20
CCDS35464.1 H2AFB3 gene_id:83740|Hs108|chrX ( 115) 302 80.9 2.1e-16
CCDS35461.1 H2AFB2 gene_id:474381|Hs108|chrX ( 115) 302 80.9 2.1e-16
CCDS35458.1 H2AFB1 gene_id:474382|Hs108|chrX ( 115) 293 78.8 9.5e-16
CCDS47581.1 H2AFV gene_id:94239|Hs108|chr7 ( 66) 240 65.7 4.6e-12
>>CCDS4585.1 HIST1H2AC gene_id:8334|Hs108|chr6 (130 aa)
initn: 825 init1: 825 opt: 825 Z-score: 1094.3 bits: 208.1 E(32554): 1.2e-54
Smith-Waterman score: 825; 100.0% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KB4 TESHHKAKGK
::::::::::
CCDS45 TESHHKAKGK
130
>>CCDS1573.1 HIST3H2A gene_id:92815|Hs108|chr1 (130 aa)
initn: 821 init1: 821 opt: 821 Z-score: 1089.0 bits: 207.1 E(32554): 2.4e-54
Smith-Waterman score: 821; 99.2% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::::::::::::::::::::::::::.:::::::::::::::::::
CCDS15 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS15 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KB4 TESHHKAKGK
::::::::::
CCDS15 TESHHKAKGK
130
>>CCDS30849.1 HIST2H2AA4 gene_id:723790|Hs108|chr1 (130 aa)
initn: 819 init1: 819 opt: 819 Z-score: 1086.4 bits: 206.6 E(32554): 3.4e-54
Smith-Waterman score: 819; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS30 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS30 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KB4 TESHHKAKGK
::::::::::
CCDS30 TESHHKAKGK
130
>>CCDS934.1 HIST2H2AA3 gene_id:8337|Hs108|chr1 (130 aa)
initn: 819 init1: 819 opt: 819 Z-score: 1086.4 bits: 206.6 E(32554): 3.4e-54
Smith-Waterman score: 819; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS93 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS93 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KB4 TESHHKAKGK
::::::::::
CCDS93 TESHHKAKGK
130
>>CCDS4639.1 HIST1H2AM gene_id:8336|Hs108|chr6 (130 aa)
initn: 818 init1: 818 opt: 818 Z-score: 1085.1 bits: 206.4 E(32554): 4.1e-54
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS46 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KB4 TESHHKAKGK
::::::::::
CCDS46 TESHHKAKGK
130
>>CCDS4632.1 HIST1H2AK gene_id:8330|Hs108|chr6 (130 aa)
initn: 818 init1: 818 opt: 818 Z-score: 1085.1 bits: 206.4 E(32554): 4.1e-54
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS46 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KB4 TESHHKAKGK
::::::::::
CCDS46 TESHHKAKGK
130
>>CCDS4574.1 HIST1H2AB gene_id:8335|Hs108|chr6 (130 aa)
initn: 818 init1: 818 opt: 818 Z-score: 1085.1 bits: 206.4 E(32554): 4.1e-54
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::.:::::::::::::::::::
CCDS45 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KB4 TESHHKAKGK
::::::::::
CCDS45 TESHHKAKGK
130
>>CCDS4595.1 HIST1H2AE gene_id:3012|Hs108|chr6 (130 aa)
initn: 818 init1: 818 opt: 818 Z-score: 1085.1 bits: 206.4 E(32554): 4.1e-54
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::.:::::::::::::::::::
CCDS45 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KB4 TESHHKAKGK
::::::::::
CCDS45 TESHHKAKGK
130
>>CCDS4634.1 HIST1H2AL gene_id:8332|Hs108|chr6 (130 aa)
initn: 818 init1: 818 opt: 818 Z-score: 1085.1 bits: 206.4 E(32554): 4.1e-54
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS46 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KB4 TESHHKAKGK
::::::::::
CCDS46 TESHHKAKGK
130
>>CCDS4619.1 HIST1H2AG gene_id:8969|Hs108|chr6 (130 aa)
initn: 818 init1: 818 opt: 818 Z-score: 1085.1 bits: 206.4 E(32554): 4.1e-54
Smith-Waterman score: 818; 98.5% identity (100.0% similar) in 130 aa overlap (1-130:1-130)
10 20 30 40 50 60
pF1KB4 MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
::::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::
CCDS46 MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK
:::::::::::::::::::::::::::::::::::::::.::::::::::::::::::::
CCDS46 AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
70 80 90 100 110 120
130
pF1KB4 TESHHKAKGK
::::::::::
CCDS46 TESHHKAKGK
130
130 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 14:58:37 2016 done: Thu Nov 3 14:58:37 2016
Total Scan time: 1.720 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]