FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4392, 356 aa
  1>>>pF1KB4392 356 - 356 aa - 356 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.8124+/-0.000756; mu= 11.6302+/- 0.046
 mean_var=144.9620+/-28.643, 0's: 0 Z-trim(114.6): 11  B-trim: 3 in 1/50
 Lambda= 0.106524
 statistics sampled from 15124 (15129) to 15124 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.791), E-opt: 0.2 (0.465), width:  16
 Scan time:  2.860

The best scores are:                                      opt bits E(32554)
CCDS4711.1 GPANK1 gene_id:7918|Hs108|chr6          ( 356) 2457 388.5 4.5e-108


>>CCDS4711.1 GPANK1 gene_id:7918|Hs108|chr6               (356 aa)
 initn: 2457 init1: 2457 opt: 2457  Z-score: 2053.8  bits: 388.5 E(32554): 4.5e-108
Smith-Waterman score: 2457; 100.0% identity (100.0% similar) in 356 aa overlap (1-356:1-356)

               10        20        30        40        50        60
pF1KB4 MSRPLLITFTPATDPSDLWKDGQQQPQPEKPESTLDGAAARAFYEALIGDESSAPDSQRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MSRPLLITFTPATDPSDLWKDGQQQPQPEKPESTLDGAAARAFYEALIGDESSAPDSQRS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 QTEPARERKRKKRRIMKAPAAEAVAEGASGRHGQGRSLEAEDKMTHRILRAAQEGDLPEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 QTEPARERKRKKRRIMKAPAAEAVAEGASGRHGQGRSLEAEDKMTHRILRAAQEGDLPEL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 RRLLEPHEAGGAGGNINARDAFWWTPLMCAARAGQGAAVSYLLGRGAAWVGVCELSGRDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 RRLLEPHEAGGAGGNINARDAFWWTPLMCAARAGQGAAVSYLLGRGAAWVGVCELSGRDA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 AQLAEEAGFPEVARMVRESHGETRSPENRSPTPSLQYCENCDTHFQDSNHRTSTAHLLSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 AQLAEEAGFPEVARMVRESHGETRSPENRSPTPSLQYCENCDTHFQDSNHRTSTAHLLSL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 SQGPQPPNLPLGVPISSPGFKLLLRGGWEPGMGLGPRGEGRANPIPTVLKRDQEGLGYRS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 SQGPQPPNLPLGVPISSPGFKLLLRGGWEPGMGLGPRGEGRANPIPTVLKRDQEGLGYRS
              250       260       270       280       290       300

              310       320       330       340       350      
pF1KB4 APQPRVTHFPAWDTRAVAGRERPPRVATLSWREERRREEKDRAWERDLRTYMNLEF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 APQPRVTHFPAWDTRAVAGRERPPRVATLSWREERRREEKDRAWERDLRTYMNLEF
              310       320       330       340       350      




356 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:50:02 2016 done: Sat Nov  5 05:50:03 2016
 Total Scan time:  2.860 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]