FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4388, 349 aa
  1>>>pF1KB4388 349 - 349 aa - 349 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.3281+/-0.00116; mu= 15.9548+/- 0.068
 mean_var=205.5632+/-95.440, 0's: 0 Z-trim(103.9): 221  B-trim: 1018 in 2/45
 Lambda= 0.089454
 statistics sampled from 7142 (7639) to 7142 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.586), E-opt: 0.2 (0.235), width:  16
 Scan time:  2.500

The best scores are:                                      opt bits E(32554)
CCDS6849.1 GPR21 gene_id:2844|Hs108|chr9           ( 349) 2376 320.4 1.4e-87
CCDS30941.1 GPR52 gene_id:9293|Hs108|chr1          ( 361) 1595 219.6 3.2e-57


>>CCDS6849.1 GPR21 gene_id:2844|Hs108|chr9                (349 aa)
 initn: 2376 init1: 2376 opt: 2376  Z-score: 1685.6  bits: 320.4 E(32554): 1.4e-87
Smith-Waterman score: 2376; 100.0% identity (100.0% similar) in 349 aa overlap (1-349:1-349)

               10        20        30        40        50        60
pF1KB4 MNSTLDGNQSSHPFCLLAFGYLETVNFCLLEVLIIVFLTVLIISGNIIVIFVFHCAPLLN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 MNSTLDGNQSSHPFCLLAFGYLETVNFCLLEVLIIVFLTVLIISGNIIVIFVFHCAPLLN
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 HHTTSYFIQTMAYADLFVGVSCVVPSLSLLHHPLPVEESLTCQIFGFVVSVLKSVSMASL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 HHTTSYFIQTMAYADLFVGVSCVVPSLSLLHHPLPVEESLTCQIFGFVVSVLKSVSMASL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 ACISIDRYIAITKPLTYNTLVTPWRLRLCIFLIWLYSTLVFLPSFFHWGKPGYHGDVFQW
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 ACISIDRYIAITKPLTYNTLVTPWRLRLCIFLIWLYSTLVFLPSFFHWGKPGYHGDVFQW
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 CAESWHTDSYFTLFIVMMLYAPAALIVCFTYFNIFRICQQHTKDISERQARFSSQSGETG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 CAESWHTDSYFTLFIVMMLYAPAALIVCFTYFNIFRICQQHTKDISERQARFSSQSGETG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 EVQACPDKRYAMVLFRITSVFYILWLPYIIYFLLESSTGHSNRFASFLTTWLAISNSFCN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 EVQACPDKRYAMVLFRITSVFYILWLPYIIYFLLESSTGHSNRFASFLTTWLAISNSFCN
              250       260       270       280       290       300

              310       320       330       340         
pF1KB4 CVIYSLSNSVFQRGLKRLSGAMCTSCASQTTANDPYTVRSKGPLNGCHI
       :::::::::::::::::::::::::::::::::::::::::::::::::
CCDS68 CVIYSLSNSVFQRGLKRLSGAMCTSCASQTTANDPYTVRSKGPLNGCHI
              310       320       330       340         

>>CCDS30941.1 GPR52 gene_id:9293|Hs108|chr1               (361 aa)
 initn: 1591 init1: 1140 opt: 1595  Z-score: 1140.8  bits: 219.6 E(32554): 3.2e-57
Smith-Waterman score: 1595; 67.5% identity (85.8% similar) in 345 aa overlap (8-349:20-361)

                           10        20        30        40        
pF1KB4             MNSTLDGNQSSHPFCLLAFGYLETVNFCLLEVLIIVFLTVLIISGNII
                          : : .  : :.::.  .:. :..:...::.:: :::.::. 
CCDS30 MNESRWTEWRILNMSSGIVNVSERHSCPLGFGHYSVVDVCIFETVVIVLLTFLIIAGNLT
               10        20        30        40        50        60

       50        60        70        80        90       100        
pF1KB4 VIFVFHCAPLLNHHTTSYFIQTMAYADLFVGVSCVVPSLSLLHHPLPVEESLTCQIFGFV
       :::::::::::.:.::::::::::::::::::::.::.:::::.   :.::::::.::..
CCDS30 VIFVFHCAPLLHHYTTSYFIQTMAYADLFVGVSCLVPTLSLLHYSTGVHESLTCQVFGYI
               70        80        90       100       110       120

      110       120       130       140       150       160        
pF1KB4 VSVLKSVSMASLACISIDRYIAITKPLTYNTLVTPWRLRLCIFLIWLYSTLVFLPSFFHW
       .::::::::: :::::.:::.::::::.:: :::: :::.::.:::.:: :.:::::: :
CCDS30 ISVLKSVSMACLACISVDRYLAITKPLSYNQLVTPCRLRICIILIWIYSCLIFLPSFFGW
              130       140       150       160       170       180

      170       180       190       200       210       220        
pF1KB4 GKPGYHGDVFQWCAESWHTDSYFTLFIVMMLYAPAALIVCFTYFNIFRICQQHTKDISER
       ::::::::.:.::: :: :..::: ::: .::::::..::::::.::.::.::::.:..:
CCDS30 GKPGYHGDIFEWCATSWLTSAYFTGFIVCLLYAPAAFVVCFTYFHIFKICRQHTKEINDR
              190       200       210       220       230       240

      230       240        250       260       270       280       
pF1KB4 QARFSSQSGETG-EVQACPDKRYAMVLFRITSVFYILWLPYIIYFLLESSTGHSNRFASF
       .::: :.  ... :.   ::.::::::::::::::.::::::::::::::   .:   ::
CCDS30 RARFPSHEVDSSRETGHSPDRRYAMVLFRITSVFYMLWLPYIIYFLLESSRVLDNPTLSF
              250       260       270       280       290       300

       290       300       310       320         330       340     
pF1KB4 LTTWLAISNSFCNCVIYSLSNSVFQRGLKRLSGAMCTSC--ASQTTANDPYTVRSKGPLN
       ::::::::::::::::::::::::. ::.::: .:::::  ...  :..:   . .   :
CCDS30 LTTWLAISNSFCNCVIYSLSNSVFRLGLRRLSETMCTSCMCVKDQEAQEP---KPRKRAN
              310       320       330       340       350          

           
pF1KB4 GCHI
       .: :
CCDS30 SCSI
       360 




349 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 14:55:25 2016 done: Thu Nov  3 14:55:25 2016
 Total Scan time:  2.500 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]