Result of FASTA (omim) for
pF1KB4325
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4325, 436 aa
1>>>pF1KB4325 436 - 436 aa - 436 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.8716+/-0.000346; mu= 16.3563+/- 0.022
mean_var=102.0222+/-20.689, 0's: 0 Z-trim(117.9): 131 B-trim: 752 in 1/51
Lambda= 0.126978
statistics sampled from 30236 (30371) to 30236 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.719), E-opt: 0.2 (0.356), width: 16
Scan time: 9.990
The best scores are: opt bits E(85289)
NP_004562 (OMIM: 602100) homeobox protein PKNOX1 i ( 436) 2855 533.3 4.6e-151
NP_001307623 (OMIM: 602100) homeobox protein PKNOX ( 435) 2836 529.9 5.1e-150
NP_001273187 (OMIM: 602100) homeobox protein PKNOX ( 319) 2063 388.1 1.7e-107
XP_011541249 (OMIM: 613066) PREDICTED: homeobox pr ( 339) 951 184.4 3.8e-46
XP_006718957 (OMIM: 613066) PREDICTED: homeobox pr ( 339) 951 184.4 3.8e-46
XP_016873600 (OMIM: 613066) PREDICTED: homeobox pr ( 339) 951 184.4 3.8e-46
XP_016873599 (OMIM: 613066) PREDICTED: homeobox pr ( 472) 794 155.8 2.2e-37
XP_011541247 (OMIM: 613066) PREDICTED: homeobox pr ( 472) 794 155.8 2.2e-37
NP_071345 (OMIM: 613066) homeobox protein PKNOX2 [ ( 472) 794 155.8 2.2e-37
XP_011541246 (OMIM: 613066) PREDICTED: homeobox pr ( 472) 794 155.8 2.2e-37
XP_005271699 (OMIM: 613066) PREDICTED: homeobox pr ( 472) 794 155.8 2.2e-37
XP_005271700 (OMIM: 613066) PREDICTED: homeobox pr ( 443) 745 146.8 1.1e-34
XP_011541248 (OMIM: 613066) PREDICTED: homeobox pr ( 356) 735 144.9 3.2e-34
XP_016873601 (OMIM: 613066) PREDICTED: homeobox pr ( 327) 686 135.9 1.5e-31
NP_002390 (OMIM: 601740) homeobox protein Meis2 is ( 381) 456 93.8 8.2e-19
XP_006720588 (OMIM: 601740) PREDICTED: homeobox pr ( 393) 456 93.8 8.3e-19
NP_733774 (OMIM: 601740) homeobox protein Meis2 is ( 394) 456 93.8 8.4e-19
NP_001207411 (OMIM: 601740) homeobox protein Meis2 ( 470) 457 94.1 8.4e-19
NP_733776 (OMIM: 601740) homeobox protein Meis2 is ( 470) 457 94.1 8.4e-19
NP_002389 (OMIM: 601739) homeobox protein Meis1 [H ( 390) 443 91.4 4.3e-18
XP_005264380 (OMIM: 601739) PREDICTED: homeobox pr ( 406) 443 91.5 4.5e-18
XP_006720586 (OMIM: 601740) PREDICTED: homeobox pr ( 476) 441 91.1 6.5e-18
NP_733775 (OMIM: 601740) homeobox protein Meis2 is ( 477) 441 91.1 6.5e-18
NP_758526 (OMIM: 601740) homeobox protein Meis2 is ( 388) 436 90.2 1e-17
XP_006720587 (OMIM: 601740) PREDICTED: homeobox pr ( 400) 436 90.2 1.1e-17
NP_733777 (OMIM: 601740) homeobox protein Meis2 is ( 401) 436 90.2 1.1e-17
XP_005264379 (OMIM: 601739) PREDICTED: homeobox pr ( 465) 432 89.5 2e-17
XP_005264378 (OMIM: 601739) PREDICTED: homeobox pr ( 481) 432 89.5 2e-17
XP_016859631 (OMIM: 601739) PREDICTED: homeobox pr ( 417) 427 88.5 3.5e-17
XP_016859630 (OMIM: 601739) PREDICTED: homeobox pr ( 433) 427 88.5 3.6e-17
XP_005264382 (OMIM: 601739) PREDICTED: homeobox pr ( 325) 412 85.7 1.9e-16
XP_005264381 (OMIM: 601739) PREDICTED: homeobox pr ( 400) 401 83.8 9.1e-16
XP_016859632 (OMIM: 601739) PREDICTED: homeobox pr ( 352) 396 82.8 1.6e-15
NP_758527 (OMIM: 601740) homeobox protein Meis2 is ( 306) 377 79.3 1.6e-14
XP_016877694 (OMIM: 601740) PREDICTED: homeobox pr ( 306) 377 79.3 1.6e-14
XP_016859635 (OMIM: 601739) PREDICTED: homeobox pr ( 246) 375 78.8 1.7e-14
XP_016859634 (OMIM: 601739) PREDICTED: homeobox pr ( 321) 364 76.9 8.5e-14
XP_016859633 (OMIM: 601739) PREDICTED: homeobox pr ( 321) 364 76.9 8.5e-14
XP_006720589 (OMIM: 601740) PREDICTED: homeobox pr ( 389) 362 76.6 1.3e-13
XP_011519893 (OMIM: 601740) PREDICTED: homeobox pr ( 331) 360 76.2 1.4e-13
XP_006720590 (OMIM: 601740) PREDICTED: homeobox pr ( 331) 360 76.2 1.4e-13
XP_006720592 (OMIM: 601740) PREDICTED: homeobox pr ( 255) 355 75.2 2.2e-13
NP_620410 (OMIM: 300411) homeobox protein TGIF2LX ( 241) 261 57.9 3.3e-08
NP_775299 (OMIM: 142946,602630) homeobox protein T ( 286) 260 57.8 4.2e-08
NP_631960 (OMIM: 400025) homeobox protein TGIF2LY ( 185) 255 56.7 5.8e-08
NP_003235 (OMIM: 142946,602630) homeobox protein T ( 272) 254 56.7 8.7e-08
NP_001265613 (OMIM: 142946,602630) homeobox protei ( 272) 254 56.7 8.7e-08
NP_775300 (OMIM: 142946,602630) homeobox protein T ( 272) 254 56.7 8.7e-08
XP_016881447 (OMIM: 142946,602630) PREDICTED: home ( 272) 254 56.7 8.7e-08
NP_733796 (OMIM: 142946,602630) homeobox protein T ( 401) 254 56.8 1.2e-07
>>NP_004562 (OMIM: 602100) homeobox protein PKNOX1 isofo (436 aa)
initn: 2855 init1: 2855 opt: 2855 Z-score: 2833.1 bits: 533.3 E(85289): 4.6e-151
Smith-Waterman score: 2855; 100.0% identity (100.0% similar) in 436 aa overlap (1-436:1-436)
10 20 30 40 50 60
pF1KB4 MMATQTLSIDSYQDGQQMQVVTELKTEQDPNCSEPDAEGVSPPPVESQTPMDVDKQAIYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 MMATQTLSIDSYQDGQQMQVVTELKTEQDPNCSEPDAEGVSPPPVESQTPMDVDKQAIYR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 HPLFPLLALLFEKCEQSTQGSEGTTSASFDVDIENFVRKQEKEGKPFFCEDPETDNLMVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 HPLFPLLALLFEKCEQSTQGSEGTTSASFDVDIENFVRKQEKEGKPFFCEDPETDNLMVK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 AIQVLRIHLLELEKVNELCKDFCSRYIACLKTKMNSETLLSGEPGSPYSPVQSQQIQSAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 AIQVLRIHLLELEKVNELCKDFCSRYIACLKTKMNSETLLSGEPGSPYSPVQSQQIQSAI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 TGTISPQGIVVPASALQQGNVAMATVAGGTVYQPVTVVTPQGQVVTQTLSPGTIRIQNSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 TGTISPQGIVVPASALQQGNVAMATVAGGTVYQPVTVVTPQGQVVTQTLSPGTIRIQNSQ
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 LQLQLNQDLSILHQDDGSSKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LQLQLNQDLSILHQDDGSSKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTN
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 LTLLQVNNWFINARRRILQPMLDSSCSETPKTKKKTAQNRPVQRFWPDSIASGVAQPPPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 LTLLQVNNWFINARRRILQPMLDSSCSETPKTKKKTAQNRPVQRFWPDSIASGVAQPPPS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 ELTMSEGAVVTITTPVNMNVDSLQSLSSDGATLAVQQVMMAGQSEDESVDSTEEDAGALA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_004 ELTMSEGAVVTITTPVNMNVDSLQSLSSDGATLAVQQVMMAGQSEDESVDSTEEDAGALA
370 380 390 400 410 420
430
pF1KB4 PAHISGLVLENSDSLQ
::::::::::::::::
NP_004 PAHISGLVLENSDSLQ
430
>>NP_001307623 (OMIM: 602100) homeobox protein PKNOX1 is (435 aa)
initn: 1688 init1: 1688 opt: 2836 Z-score: 2814.3 bits: 529.9 E(85289): 5.1e-150
Smith-Waterman score: 2836; 99.8% identity (99.8% similar) in 436 aa overlap (1-436:1-435)
10 20 30 40 50 60
pF1KB4 MMATQTLSIDSYQDGQQMQVVTELKTEQDPNCSEPDAEGVSPPPVESQTPMDVDKQAIYR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MMATQTLSIDSYQDGQQMQVVTELKTEQDPNCSEPDAEGVSPPPVESQTPMDVDKQAIYR
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 HPLFPLLALLFEKCEQSTQGSEGTTSASFDVDIENFVRKQEKEGKPFFCEDPETDNLMVK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HPLFPLLALLFEKCEQSTQGSEGTTSASFDVDIENFVRKQEKEGKPFFCEDPETDNLMVK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 AIQVLRIHLLELEKVNELCKDFCSRYIACLKTKMNSETLLSGEPGSPYSPVQSQQIQSAI
:::::::::::::::::::::::::::::::::::::::::::::::::::::: :::::
NP_001 AIQVLRIHLLELEKVNELCKDFCSRYIACLKTKMNSETLLSGEPGSPYSPVQSQ-IQSAI
130 140 150 160 170
190 200 210 220 230 240
pF1KB4 TGTISPQGIVVPASALQQGNVAMATVAGGTVYQPVTVVTPQGQVVTQTLSPGTIRIQNSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TGTISPQGIVVPASALQQGNVAMATVAGGTVYQPVTVVTPQGQVVTQTLSPGTIRIQNSQ
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB4 LQLQLNQDLSILHQDDGSSKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LQLQLNQDLSILHQDDGSSKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTN
240 250 260 270 280 290
310 320 330 340 350 360
pF1KB4 LTLLQVNNWFINARRRILQPMLDSSCSETPKTKKKTAQNRPVQRFWPDSIASGVAQPPPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LTLLQVNNWFINARRRILQPMLDSSCSETPKTKKKTAQNRPVQRFWPDSIASGVAQPPPS
300 310 320 330 340 350
370 380 390 400 410 420
pF1KB4 ELTMSEGAVVTITTPVNMNVDSLQSLSSDGATLAVQQVMMAGQSEDESVDSTEEDAGALA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ELTMSEGAVVTITTPVNMNVDSLQSLSSDGATLAVQQVMMAGQSEDESVDSTEEDAGALA
360 370 380 390 400 410
430
pF1KB4 PAHISGLVLENSDSLQ
::::::::::::::::
NP_001 PAHISGLVLENSDSLQ
420 430
>>NP_001273187 (OMIM: 602100) homeobox protein PKNOX1 is (319 aa)
initn: 2063 init1: 2063 opt: 2063 Z-score: 2050.8 bits: 388.1 E(85289): 1.7e-107
Smith-Waterman score: 2063; 100.0% identity (100.0% similar) in 319 aa overlap (118-436:1-319)
90 100 110 120 130 140
pF1KB4 SFDVDIENFVRKQEKEGKPFFCEDPETDNLMVKAIQVLRIHLLELEKVNELCKDFCSRYI
::::::::::::::::::::::::::::::
NP_001 MVKAIQVLRIHLLELEKVNELCKDFCSRYI
10 20 30
150 160 170 180 190 200
pF1KB4 ACLKTKMNSETLLSGEPGSPYSPVQSQQIQSAITGTISPQGIVVPASALQQGNVAMATVA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ACLKTKMNSETLLSGEPGSPYSPVQSQQIQSAITGTISPQGIVVPASALQQGNVAMATVA
40 50 60 70 80 90
210 220 230 240 250 260
pF1KB4 GGTVYQPVTVVTPQGQVVTQTLSPGTIRIQNSQLQLQLNQDLSILHQDDGSSKNKRGVLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGTVYQPVTVVTPQGQVVTQTLSPGTIRIQNSQLQLQLNQDLSILHQDDGSSKNKRGVLP
100 110 120 130 140 150
270 280 290 300 310 320
pF1KB4 KHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQPMLDSSCS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQPMLDSSCS
160 170 180 190 200 210
330 340 350 360 370 380
pF1KB4 ETPKTKKKTAQNRPVQRFWPDSIASGVAQPPPSELTMSEGAVVTITTPVNMNVDSLQSLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ETPKTKKKTAQNRPVQRFWPDSIASGVAQPPPSELTMSEGAVVTITTPVNMNVDSLQSLS
220 230 240 250 260 270
390 400 410 420 430
pF1KB4 SDGATLAVQQVMMAGQSEDESVDSTEEDAGALAPAHISGLVLENSDSLQ
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SDGATLAVQQVMMAGQSEDESVDSTEEDAGALAPAHISGLVLENSDSLQ
280 290 300 310
>>XP_011541249 (OMIM: 613066) PREDICTED: homeobox protei (339 aa)
initn: 1133 init1: 457 opt: 951 Z-score: 949.5 bits: 184.4 E(85289): 3.8e-46
Smith-Waterman score: 1209; 58.5% identity (79.0% similar) in 352 aa overlap (118-436:1-339)
90 100 110 120 130 140
pF1KB4 SFDVDIENFVRKQEKEGKPFFCEDPETDNLMVKAIQVLRIHLLELEKVNELCKDFCSRYI
::::::::::::::::::::::::::.:::
XP_011 MVKAIQVLRIHLLELEKVNELCKDFCNRYI
10 20 30
150 160 170 180 190
pF1KB4 ACLKTKMNSETLLSGEPGSPYSPVQ------SQQI----QSAITG-TISPQGIVVPASAL
.::::::.:..:: .. :.:::: : ::.. ....: . .:::::::::::
XP_011 TCLKTKMHSDNLLRNDLGGPYSPNQPSINLHSQDLLQNSPNSMSGVSNNPQGIVVPASAL
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB4 QQGNVAMATV-----AGGTVYQPVTVVTPQGQVVTQTLSPGTIRIQNSQLQLQLNQDLSI
::::.::.:: .::..:::::.:: :::::::.. :.:.:::.:..:.:. :.
XP_011 QQGNIAMTTVNSQVVSGGALYQPVTMVTSQGQVVTQAIPQGAIQIQNTQVNLDLT---SL
100 110 120 130 140
260 270 280 290 300 310
pF1KB4 LHQDDGSSKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFI
: ..: .::::::::::::::.::::::::. :::::::::.::::::::::::::::::
XP_011 LDNEDKKSKNKRGVLPKHATNIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFI
150 160 170 180 190 200
320 330 340 350 360 370
pF1KB4 NARRRILQPMLDSSCSE-TPKTKKKTAQNRPVQRFWPDSIASGVAQPPPSELTMSEGAVV
::::::::::::.: . .::.:: .:.::.:::::.:::.:: : ..:..
XP_011 NARRRILQPMLDASNPDPAPKAKKIKSQHRPTQRFWPNSIAAGVLQ--------QQGGAP
210 220 230 240 250
380 390 400 410
pF1KB4 TITTPVNMNVDSLQSLSSDGATLAVQQVMMAGQSEDESVDSTEED---------------
. ..:.:.:::::::.::.:.::.:::.. :.:.:.:::.
XP_011 GTNPDGSINLDNLQSLSSDSATMAMQQAMMAAH--DDSLDGTEEEDEDEMEEEEEEELEE
260 270 280 290 300 310
420 430
pF1KB4 -AGALAPAHISGLVLENSDSLQ
. : ...: : ::.::::.
XP_011 EVDELQTTNVSDLGLEHSDSLE
320 330
>>XP_006718957 (OMIM: 613066) PREDICTED: homeobox protei (339 aa)
initn: 1133 init1: 457 opt: 951 Z-score: 949.5 bits: 184.4 E(85289): 3.8e-46
Smith-Waterman score: 1209; 58.5% identity (79.0% similar) in 352 aa overlap (118-436:1-339)
90 100 110 120 130 140
pF1KB4 SFDVDIENFVRKQEKEGKPFFCEDPETDNLMVKAIQVLRIHLLELEKVNELCKDFCSRYI
::::::::::::::::::::::::::.:::
XP_006 MVKAIQVLRIHLLELEKVNELCKDFCNRYI
10 20 30
150 160 170 180 190
pF1KB4 ACLKTKMNSETLLSGEPGSPYSPVQ------SQQI----QSAITG-TISPQGIVVPASAL
.::::::.:..:: .. :.:::: : ::.. ....: . .:::::::::::
XP_006 TCLKTKMHSDNLLRNDLGGPYSPNQPSINLHSQDLLQNSPNSMSGVSNNPQGIVVPASAL
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB4 QQGNVAMATV-----AGGTVYQPVTVVTPQGQVVTQTLSPGTIRIQNSQLQLQLNQDLSI
::::.::.:: .::..:::::.:: :::::::.. :.:.:::.:..:.:. :.
XP_006 QQGNIAMTTVNSQVVSGGALYQPVTMVTSQGQVVTQAIPQGAIQIQNTQVNLDLT---SL
100 110 120 130 140
260 270 280 290 300 310
pF1KB4 LHQDDGSSKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFI
: ..: .::::::::::::::.::::::::. :::::::::.::::::::::::::::::
XP_006 LDNEDKKSKNKRGVLPKHATNIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFI
150 160 170 180 190 200
320 330 340 350 360 370
pF1KB4 NARRRILQPMLDSSCSE-TPKTKKKTAQNRPVQRFWPDSIASGVAQPPPSELTMSEGAVV
::::::::::::.: . .::.:: .:.::.:::::.:::.:: : ..:..
XP_006 NARRRILQPMLDASNPDPAPKAKKIKSQHRPTQRFWPNSIAAGVLQ--------QQGGAP
210 220 230 240 250
380 390 400 410
pF1KB4 TITTPVNMNVDSLQSLSSDGATLAVQQVMMAGQSEDESVDSTEED---------------
. ..:.:.:::::::.::.:.::.:::.. :.:.:.:::.
XP_006 GTNPDGSINLDNLQSLSSDSATMAMQQAMMAAH--DDSLDGTEEEDEDEMEEEEEEELEE
260 270 280 290 300 310
420 430
pF1KB4 -AGALAPAHISGLVLENSDSLQ
. : ...: : ::.::::.
XP_006 EVDELQTTNVSDLGLEHSDSLE
320 330
>>XP_016873600 (OMIM: 613066) PREDICTED: homeobox protei (339 aa)
initn: 1133 init1: 457 opt: 951 Z-score: 949.5 bits: 184.4 E(85289): 3.8e-46
Smith-Waterman score: 1209; 58.5% identity (79.0% similar) in 352 aa overlap (118-436:1-339)
90 100 110 120 130 140
pF1KB4 SFDVDIENFVRKQEKEGKPFFCEDPETDNLMVKAIQVLRIHLLELEKVNELCKDFCSRYI
::::::::::::::::::::::::::.:::
XP_016 MVKAIQVLRIHLLELEKVNELCKDFCNRYI
10 20 30
150 160 170 180 190
pF1KB4 ACLKTKMNSETLLSGEPGSPYSPVQ------SQQI----QSAITG-TISPQGIVVPASAL
.::::::.:..:: .. :.:::: : ::.. ....: . .:::::::::::
XP_016 TCLKTKMHSDNLLRNDLGGPYSPNQPSINLHSQDLLQNSPNSMSGVSNNPQGIVVPASAL
40 50 60 70 80 90
200 210 220 230 240 250
pF1KB4 QQGNVAMATV-----AGGTVYQPVTVVTPQGQVVTQTLSPGTIRIQNSQLQLQLNQDLSI
::::.::.:: .::..:::::.:: :::::::.. :.:.:::.:..:.:. :.
XP_016 QQGNIAMTTVNSQVVSGGALYQPVTMVTSQGQVVTQAIPQGAIQIQNTQVNLDLT---SL
100 110 120 130 140
260 270 280 290 300 310
pF1KB4 LHQDDGSSKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFI
: ..: .::::::::::::::.::::::::. :::::::::.::::::::::::::::::
XP_016 LDNEDKKSKNKRGVLPKHATNIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFI
150 160 170 180 190 200
320 330 340 350 360 370
pF1KB4 NARRRILQPMLDSSCSE-TPKTKKKTAQNRPVQRFWPDSIASGVAQPPPSELTMSEGAVV
::::::::::::.: . .::.:: .:.::.:::::.:::.:: : ..:..
XP_016 NARRRILQPMLDASNPDPAPKAKKIKSQHRPTQRFWPNSIAAGVLQ--------QQGGAP
210 220 230 240 250
380 390 400 410
pF1KB4 TITTPVNMNVDSLQSLSSDGATLAVQQVMMAGQSEDESVDSTEED---------------
. ..:.:.:::::::.::.:.::.:::.. :.:.:.:::.
XP_016 GTNPDGSINLDNLQSLSSDSATMAMQQAMMAAH--DDSLDGTEEEDEDEMEEEEEEELEE
260 270 280 290 300 310
420 430
pF1KB4 -AGALAPAHISGLVLENSDSLQ
. : ...: : ::.::::.
XP_016 EVDELQTTNVSDLGLEHSDSLE
320 330
>>XP_016873599 (OMIM: 613066) PREDICTED: homeobox protei (472 aa)
initn: 1540 init1: 675 opt: 794 Z-score: 792.2 bits: 155.8 E(85289): 2.2e-37
Smith-Waterman score: 1650; 58.1% identity (79.1% similar) in 473 aa overlap (1-436:13-472)
10 20 30 40
pF1KB4 MMATQTLSIDSYQDGQQMQVVTELKTE-QDPNCSEPDAEGVSP-P--P
:::::.. :::. :: .... .. : . : :.: . .: : :
XP_016 MMQHASPAPALTMMATQNVPPPPYQDSPQMTATAQPPSKAQAVHISAPSAAASTPVPSAP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB4 VESQTPMDVDKQAIYRHPLFPLLALLFEKCEQSTQGSEGTTSASFDVDIENFVRKQEKEG
.. :. ...::.:.:::::::::.::::::::.::::: :::::::::::::..::.:
XP_016 IDPQAQLEADKRAVYRHPLFPLLTLLFEKCEQATQGSECITSASFDVDIENFVHQQEQEH
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB4 KPFFCEDPETDNLMVKAIQVLRIHLLELEKVNELCKDFCSRYIACLKTKMNSETLLSGEP
:::: .::: :::::::::::::::::::::::::::::.:::.::::::.:..:: ..
XP_016 KPFFSDDPELDNLMVKAIQVLRIHLLELEKVNELCKDFCNRYITCLKTKMHSDNLLRNDL
130 140 150 160 170 180
170 180 190 200
pF1KB4 GSPYSPVQ------SQQI----QSAITG-TISPQGIVVPASALQQGNVAMATV-----AG
:.:::: : ::.. ....: . .:::::::::::::::.::.:: .:
XP_016 GGPYSPNQPSINLHSQDLLQNSPNSMSGVSNNPQGIVVPASALQQGNIAMTTVNSQVVSG
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB4 GTVYQPVTVVTPQGQVVTQTLSPGTIRIQNSQLQLQLNQDLSILHQDDGSSKNKRGVLPK
:..:::::.:: :::::::.. :.:.:::.:..:.:. :.: ..: .::::::::::
XP_016 GALYQPVTMVTSQGQVVTQAIPQGAIQIQNTQVNLDLT---SLLDNEDKKSKNKRGVLPK
250 260 270 280 290
270 280 290 300 310 320
pF1KB4 HATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQPMLDSSCSE
::::.::::::::. :::::::::.::::::::::::::::::::::::::::::.: .
XP_016 HATNIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRRILQPMLDASNPD
300 310 320 330 340 350
330 340 350 360 370 380
pF1KB4 -TPKTKKKTAQNRPVQRFWPDSIASGVAQPPPSELTMSEGAVVTITTPVNMNVDSLQSLS
.::.:: .:.::.:::::.:::.:: : ..:.. . ..:.:.:::::
XP_016 PAPKAKKIKSQHRPTQRFWPNSIAAGVLQ--------QQGGAPGTNPDGSINLDNLQSLS
360 370 380 390 400
390 400 410 420 430
pF1KB4 SDGATLAVQQVMMAGQSEDESVDSTEED----------------AGALAPAHISGLVLEN
::.::.:.::.::: ..:.:.:.:::. . : ...: : ::.
XP_016 SDSATMAMQQAMMA--AHDDSLDGTEEEDEDEMEEEEEEELEEEVDELQTTNVSDLGLEH
410 420 430 440 450 460
pF1KB4 SDSLQ
::::.
XP_016 SDSLE
470
>>XP_011541247 (OMIM: 613066) PREDICTED: homeobox protei (472 aa)
initn: 1540 init1: 675 opt: 794 Z-score: 792.2 bits: 155.8 E(85289): 2.2e-37
Smith-Waterman score: 1650; 58.1% identity (79.1% similar) in 473 aa overlap (1-436:13-472)
10 20 30 40
pF1KB4 MMATQTLSIDSYQDGQQMQVVTELKTE-QDPNCSEPDAEGVSP-P--P
:::::.. :::. :: .... .. : . : :.: . .: : :
XP_011 MMQHASPAPALTMMATQNVPPPPYQDSPQMTATAQPPSKAQAVHISAPSAAASTPVPSAP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB4 VESQTPMDVDKQAIYRHPLFPLLALLFEKCEQSTQGSEGTTSASFDVDIENFVRKQEKEG
.. :. ...::.:.:::::::::.::::::::.::::: :::::::::::::..::.:
XP_011 IDPQAQLEADKRAVYRHPLFPLLTLLFEKCEQATQGSECITSASFDVDIENFVHQQEQEH
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB4 KPFFCEDPETDNLMVKAIQVLRIHLLELEKVNELCKDFCSRYIACLKTKMNSETLLSGEP
:::: .::: :::::::::::::::::::::::::::::.:::.::::::.:..:: ..
XP_011 KPFFSDDPELDNLMVKAIQVLRIHLLELEKVNELCKDFCNRYITCLKTKMHSDNLLRNDL
130 140 150 160 170 180
170 180 190 200
pF1KB4 GSPYSPVQ------SQQI----QSAITG-TISPQGIVVPASALQQGNVAMATV-----AG
:.:::: : ::.. ....: . .:::::::::::::::.::.:: .:
XP_011 GGPYSPNQPSINLHSQDLLQNSPNSMSGVSNNPQGIVVPASALQQGNIAMTTVNSQVVSG
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB4 GTVYQPVTVVTPQGQVVTQTLSPGTIRIQNSQLQLQLNQDLSILHQDDGSSKNKRGVLPK
:..:::::.:: :::::::.. :.:.:::.:..:.:. :.: ..: .::::::::::
XP_011 GALYQPVTMVTSQGQVVTQAIPQGAIQIQNTQVNLDLT---SLLDNEDKKSKNKRGVLPK
250 260 270 280 290
270 280 290 300 310 320
pF1KB4 HATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQPMLDSSCSE
::::.::::::::. :::::::::.::::::::::::::::::::::::::::::.: .
XP_011 HATNIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRRILQPMLDASNPD
300 310 320 330 340 350
330 340 350 360 370 380
pF1KB4 -TPKTKKKTAQNRPVQRFWPDSIASGVAQPPPSELTMSEGAVVTITTPVNMNVDSLQSLS
.::.:: .:.::.:::::.:::.:: : ..:.. . ..:.:.:::::
XP_011 PAPKAKKIKSQHRPTQRFWPNSIAAGVLQ--------QQGGAPGTNPDGSINLDNLQSLS
360 370 380 390 400
390 400 410 420 430
pF1KB4 SDGATLAVQQVMMAGQSEDESVDSTEED----------------AGALAPAHISGLVLEN
::.::.:.::.::: ..:.:.:.:::. . : ...: : ::.
XP_011 SDSATMAMQQAMMA--AHDDSLDGTEEEDEDEMEEEEEEELEEEVDELQTTNVSDLGLEH
410 420 430 440 450 460
pF1KB4 SDSLQ
::::.
XP_011 SDSLE
470
>>NP_071345 (OMIM: 613066) homeobox protein PKNOX2 [Homo (472 aa)
initn: 1540 init1: 675 opt: 794 Z-score: 792.2 bits: 155.8 E(85289): 2.2e-37
Smith-Waterman score: 1650; 58.1% identity (79.1% similar) in 473 aa overlap (1-436:13-472)
10 20 30 40
pF1KB4 MMATQTLSIDSYQDGQQMQVVTELKTE-QDPNCSEPDAEGVSP-P--P
:::::.. :::. :: .... .. : . : :.: . .: : :
NP_071 MMQHASPAPALTMMATQNVPPPPYQDSPQMTATAQPPSKAQAVHISAPSAAASTPVPSAP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB4 VESQTPMDVDKQAIYRHPLFPLLALLFEKCEQSTQGSEGTTSASFDVDIENFVRKQEKEG
.. :. ...::.:.:::::::::.::::::::.::::: :::::::::::::..::.:
NP_071 IDPQAQLEADKRAVYRHPLFPLLTLLFEKCEQATQGSECITSASFDVDIENFVHQQEQEH
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB4 KPFFCEDPETDNLMVKAIQVLRIHLLELEKVNELCKDFCSRYIACLKTKMNSETLLSGEP
:::: .::: :::::::::::::::::::::::::::::.:::.::::::.:..:: ..
NP_071 KPFFSDDPELDNLMVKAIQVLRIHLLELEKVNELCKDFCNRYITCLKTKMHSDNLLRNDL
130 140 150 160 170 180
170 180 190 200
pF1KB4 GSPYSPVQ------SQQI----QSAITG-TISPQGIVVPASALQQGNVAMATV-----AG
:.:::: : ::.. ....: . .:::::::::::::::.::.:: .:
NP_071 GGPYSPNQPSINLHSQDLLQNSPNSMSGVSNNPQGIVVPASALQQGNIAMTTVNSQVVSG
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB4 GTVYQPVTVVTPQGQVVTQTLSPGTIRIQNSQLQLQLNQDLSILHQDDGSSKNKRGVLPK
:..:::::.:: :::::::.. :.:.:::.:..:.:. :.: ..: .::::::::::
NP_071 GALYQPVTMVTSQGQVVTQAIPQGAIQIQNTQVNLDLT---SLLDNEDKKSKNKRGVLPK
250 260 270 280 290
270 280 290 300 310 320
pF1KB4 HATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQPMLDSSCSE
::::.::::::::. :::::::::.::::::::::::::::::::::::::::::.: .
NP_071 HATNIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRRILQPMLDASNPD
300 310 320 330 340 350
330 340 350 360 370 380
pF1KB4 -TPKTKKKTAQNRPVQRFWPDSIASGVAQPPPSELTMSEGAVVTITTPVNMNVDSLQSLS
.::.:: .:.::.:::::.:::.:: : ..:.. . ..:.:.:::::
NP_071 PAPKAKKIKSQHRPTQRFWPNSIAAGVLQ--------QQGGAPGTNPDGSINLDNLQSLS
360 370 380 390 400
390 400 410 420 430
pF1KB4 SDGATLAVQQVMMAGQSEDESVDSTEED----------------AGALAPAHISGLVLEN
::.::.:.::.::: ..:.:.:.:::. . : ...: : ::.
NP_071 SDSATMAMQQAMMA--AHDDSLDGTEEEDEDEMEEEEEEELEEEVDELQTTNVSDLGLEH
410 420 430 440 450 460
pF1KB4 SDSLQ
::::.
NP_071 SDSLE
470
>>XP_011541246 (OMIM: 613066) PREDICTED: homeobox protei (472 aa)
initn: 1540 init1: 675 opt: 794 Z-score: 792.2 bits: 155.8 E(85289): 2.2e-37
Smith-Waterman score: 1650; 58.1% identity (79.1% similar) in 473 aa overlap (1-436:13-472)
10 20 30 40
pF1KB4 MMATQTLSIDSYQDGQQMQVVTELKTE-QDPNCSEPDAEGVSP-P--P
:::::.. :::. :: .... .. : . : :.: . .: : :
XP_011 MMQHASPAPALTMMATQNVPPPPYQDSPQMTATAQPPSKAQAVHISAPSAAASTPVPSAP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB4 VESQTPMDVDKQAIYRHPLFPLLALLFEKCEQSTQGSEGTTSASFDVDIENFVRKQEKEG
.. :. ...::.:.:::::::::.::::::::.::::: :::::::::::::..::.:
XP_011 IDPQAQLEADKRAVYRHPLFPLLTLLFEKCEQATQGSECITSASFDVDIENFVHQQEQEH
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB4 KPFFCEDPETDNLMVKAIQVLRIHLLELEKVNELCKDFCSRYIACLKTKMNSETLLSGEP
:::: .::: :::::::::::::::::::::::::::::.:::.::::::.:..:: ..
XP_011 KPFFSDDPELDNLMVKAIQVLRIHLLELEKVNELCKDFCNRYITCLKTKMHSDNLLRNDL
130 140 150 160 170 180
170 180 190 200
pF1KB4 GSPYSPVQ------SQQI----QSAITG-TISPQGIVVPASALQQGNVAMATV-----AG
:.:::: : ::.. ....: . .:::::::::::::::.::.:: .:
XP_011 GGPYSPNQPSINLHSQDLLQNSPNSMSGVSNNPQGIVVPASALQQGNIAMTTVNSQVVSG
190 200 210 220 230 240
210 220 230 240 250 260
pF1KB4 GTVYQPVTVVTPQGQVVTQTLSPGTIRIQNSQLQLQLNQDLSILHQDDGSSKNKRGVLPK
:..:::::.:: :::::::.. :.:.:::.:..:.:. :.: ..: .::::::::::
XP_011 GALYQPVTMVTSQGQVVTQAIPQGAIQIQNTQVNLDLT---SLLDNEDKKSKNKRGVLPK
250 260 270 280 290
270 280 290 300 310 320
pF1KB4 HATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQPMLDSSCSE
::::.::::::::. :::::::::.::::::::::::::::::::::::::::::.: .
XP_011 HATNIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRRILQPMLDASNPD
300 310 320 330 340 350
330 340 350 360 370 380
pF1KB4 -TPKTKKKTAQNRPVQRFWPDSIASGVAQPPPSELTMSEGAVVTITTPVNMNVDSLQSLS
.::.:: .:.::.:::::.:::.:: : ..:.. . ..:.:.:::::
XP_011 PAPKAKKIKSQHRPTQRFWPNSIAAGVLQ--------QQGGAPGTNPDGSINLDNLQSLS
360 370 380 390 400
390 400 410 420 430
pF1KB4 SDGATLAVQQVMMAGQSEDESVDSTEED----------------AGALAPAHISGLVLEN
::.::.:.::.::: ..:.:.:.:::. . : ...: : ::.
XP_011 SDSATMAMQQAMMA--AHDDSLDGTEEEDEDEMEEEEEEELEEEVDELQTTNVSDLGLEH
410 420 430 440 450 460
pF1KB4 SDSLQ
::::.
XP_011 SDSLE
470
436 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 14:46:19 2016 done: Thu Nov 3 14:46:21 2016
Total Scan time: 9.990 Total Display time: 0.050
Function used was FASTA [36.3.4 Apr, 2011]