FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4308, 183 aa
  1>>>pF1KB4308 183 - 183 aa - 183 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.9206+/-0.000731; mu= 9.5196+/- 0.043
 mean_var=104.7473+/-21.897, 0's: 0 Z-trim(111.3): 244  B-trim: 0 in 0/51
 Lambda= 0.125315
 statistics sampled from 11952 (12256) to 11952 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.758), E-opt: 0.2 (0.376), width:  16
 Scan time:  2.100

The best scores are:                                      opt bits E(32554)
CCDS2028.1 ANKRD39 gene_id:51239|Hs108|chr2        ( 183) 1267 239.0 1.2e-63
CCDS7417.1 TNKS2 gene_id:80351|Hs108|chr10         (1166)  332 70.7 3.7e-12


>>CCDS2028.1 ANKRD39 gene_id:51239|Hs108|chr2             (183 aa)
 initn: 1267 init1: 1267 opt: 1267  Z-score: 1256.1  bits: 239.0 E(32554): 1.2e-63
Smith-Waterman score: 1267; 100.0% identity (100.0% similar) in 183 aa overlap (1-183:1-183)

               10        20        30        40        50        60
pF1KB4 MATPRPCADGPCCSHPSAVLGVQQTLEEMDFERGIWSAALNGDLGRVKHLIQKAEDPSQP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 MATPRPCADGPCCSHPSAVLGVQQTLEEMDFERGIWSAALNGDLGRVKHLIQKAEDPSQP
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 DSAGYTALHYASRNGHYAVCQFLLESGAKCDAQTHGGATALHRASYCGHTEIARLLLSHG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 DSAGYTALHYASRNGHYAVCQFLLESGAKCDAQTHGGATALHRASYCGHTEIARLLLSHG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 SNPRVVDDDGMTSLHKAAERGHGDICSLLLQHSPALKAIRDRKARLACDLLPCNSDLRDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS20 SNPRVVDDDGMTSLHKAAERGHGDICSLLLQHSPALKAIRDRKARLACDLLPCNSDLRDL
              130       140       150       160       170       180

          
pF1KB4 LSS
       :::
CCDS20 LSS
          

>>CCDS7417.1 TNKS2 gene_id:80351|Hs108|chr10              (1166 aa)
 initn: 559 init1: 247 opt: 332  Z-score: 331.9  bits: 70.7 E(32554): 3.7e-12
Smith-Waterman score: 332; 39.3% identity (63.7% similar) in 168 aa overlap (5-170:4-163)

               10        20        30        40        50        60
pF1KB4 MATPRPCADGPCCSHPSAVLGVQQTLEEMDFERGIWSAALNGDLGRVKHLIQKAEDPSQP
           : :: :      .:. .:. . .:. ::     :  :::. :::.:.   :  .. 
CCDS74  MSGRRCAGGGAACASAAAEAVEPAAREL-FE-----ACRNGDVERVKRLVTP-EKVNSR
                10        20         30             40         50  

                 70        80        90       100       110        
pF1KB4 DSAGY--TALHYASRNGHYAVCQFLLESGAKCDAQTHGGATALHRASYCGHTEIARLLLS
       :.::   : ::.:.  :.  : ..::..::. .:.  ::   :: :   ::.:.. ::: 
CCDS74 DTAGRKSTPLHFAAGFGRKDVVEYLLQNGANVQARDDGGLIPLHNACSFGHAEVVNLLLR
             60        70        80        90       100       110  

      120       130       140       150       160       170        
pF1KB4 HGSNPRVVDDDGMTSLHKAAERGHGDICSLLLQHSPALKAIRDRKARLACDLLPCNSDLR
       ::..: . :. ..: ::.:: .:. :.: .::::. :  .::.  .: : ::        
CCDS74 HGADPNARDNWNYTPLHEAAIKGKIDVCIVLLQHG-AEPTIRNTDGRTALDLADPSAKAV
            120       130       140        150       160       170 

      180                                                          
pF1KB4 DLLSS                                                       
                                                                   
CCDS74 LTGEYKKDELLESARSGNEEKMMALLTPLNVNCHASDGRKSTPLHLAAGYNRVKIVQLLL
             180       190       200       210       220       230 




183 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 19:00:39 2016 done: Sat Nov  5 19:00:39 2016
 Total Scan time:  2.100 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]