Result of FASTA (ccds) for
pF1KB4286
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4286, 235 aa
1>>>pF1KB4286 235 - 235 aa - 235 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.6288+/-0.0009; mu= 13.1024+/- 0.054
mean_var=70.4904+/-14.519, 0's: 0 Z-trim(106.1): 14 B-trim: 3 in 1/47
Lambda= 0.152760
statistics sampled from 8755 (8765) to 8755 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.644), E-opt: 0.2 (0.269), width: 16
Scan time: 2.050
The best scores are: opt bits E(32554)
CCDS3223.1 KCNMB2 gene_id:10242|Hs108|chr3 ( 235) 1581 357.2 5.2e-99
CCDS3225.1 KCNMB3 gene_id:27094|Hs108|chr3 ( 277) 636 149.0 2.9e-36
CCDS43172.1 KCNMB3 gene_id:27094|Hs108|chr3 ( 257) 633 148.3 4.4e-36
CCDS43173.1 KCNMB3 gene_id:27094|Hs108|chr3 ( 275) 633 148.4 4.6e-36
CCDS3226.1 KCNMB3 gene_id:27094|Hs108|chr3 ( 279) 633 148.4 4.7e-36
CCDS4373.1 KCNMB1 gene_id:3779|Hs108|chr5 ( 191) 534 126.5 1.2e-29
CCDS8997.1 KCNMB4 gene_id:27345|Hs108|chr12 ( 210) 419 101.1 5.8e-22
CCDS54683.1 KCNMB3 gene_id:27094|Hs108|chr3 ( 173) 381 92.7 1.6e-19
>>CCDS3223.1 KCNMB2 gene_id:10242|Hs108|chr3 (235 aa)
initn: 1581 init1: 1581 opt: 1581 Z-score: 1891.1 bits: 357.2 E(32554): 5.2e-99
Smith-Waterman score: 1581; 100.0% identity (100.0% similar) in 235 aa overlap (1-235:1-235)
10 20 30 40 50 60
pF1KB4 MFIWTSGRTSSSYRHDEKRNIYQKIRDHDLLDKRKTVTALKAGEDRAILLGLAMMVCSIM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MFIWTSGRTSSSYRHDEKRNIYQKIRDHDLLDKRKTVTALKAGEDRAILLGLAMMVCSIM
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 MYFLLGITLLRSYMQSVWTEESQCTLLNASITETFNCSFSCGPDCWKLSQYPCLQVYVNL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MYFLLGITLLRSYMQSVWTEESQCTLLNASITETFNCSFSCGPDCWKLSQYPCLQVYVNL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 TSSGEKLLLYHTEETIKINQKCSYIPKCGKNFEESMSLVNVVMENFRKYQHFSCYSDPEG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TSSGEKLLLYHTEETIKINQKCSYIPKCGKNFEESMSLVNVVMENFRKYQHFSCYSDPEG
130 140 150 160 170 180
190 200 210 220 230
pF1KB4 NQKSVILTKLYSSNVLFHSLFWPTCMMAGGVAIVAMVKLTQYLSLLCERIQRINR
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 NQKSVILTKLYSSNVLFHSLFWPTCMMAGGVAIVAMVKLTQYLSLLCERIQRINR
190 200 210 220 230
>>CCDS3225.1 KCNMB3 gene_id:27094|Hs108|chr3 (277 aa)
initn: 593 init1: 224 opt: 636 Z-score: 764.4 bits: 149.0 E(32554): 2.9e-36
Smith-Waterman score: 636; 41.8% identity (72.0% similar) in 232 aa overlap (7-235:20-247)
10 20 30 40
pF1KB4 MFIWTSGRTSSSYRHDEKRNIYQKIRDHDLLDKRKTVTALKAGEDRA
:::. .... :. : : :: .: . . .::::::
CCDS32 MQPFSIPVQITLQGSRRRQGRTAFPASGKKRETDYS---DGDPLDVHKRLPS-SAGEDRA
10 20 30 40 50
50 60 70 80 90 100
pF1KB4 ILLGLAMMVCSIMMYFLLGITLLRSYMQSVWTEESQCTLLNASITETF-NCSFSCGPDCW
..::.::: :..:.:::: :.:. .: :. ::: :: ....: . . .:.:.:: :
CCDS32 VMLGFAMMGFSVLMFFLLGTTILKPFMLSIQREESTCTAIHTDIMDDWLDCAFTCGVHCH
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB4 KLSQYPCLQVYVNLTSSGEKLLLYHTEETIKINQKCSYIPKCGKNFEESMSLVNVVMENF
..::::::.:::. :.: ::...::...:: :: : ::: .. .. .. . . : :
CCDS32 GQGKYPCLQVFVNLSHPGQKALLHYNEEAVQINPKCFYTPKCHQDRNDLLNSALDIKEFF
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB4 --RKYQHFSCYSDPEGNQKSVILTKLYSSNVLFHSLFWPTCMMAGGVAIVAMVKLTQYLS
.. :::. .: .....::: : :.. ..:: ::::. . ::. ::.::.:::.::
CCDS32 DHKNGTPFSCFYSPASQSEDVILIKKYDQMAIFHCLFWPSLTLLGGALIVGMVRLTQHLS
180 190 200 210 220 230
230
pF1KB4 LLCERIQRINR
::::. . . :
CCDS32 LLCEKYSTVVRDEVGGKVPYIEQHQFKLCIMRRSKGRAEKS
240 250 260 270
>>CCDS43172.1 KCNMB3 gene_id:27094|Hs108|chr3 (257 aa)
initn: 593 init1: 224 opt: 633 Z-score: 761.4 bits: 148.3 E(32554): 4.4e-36
Smith-Waterman score: 633; 43.9% identity (74.1% similar) in 212 aa overlap (27-235:17-227)
10 20 30 40 50 60
pF1KB4 MFIWTSGRTSSSYRHDEKRNIYQKIRDHDLLDKRKTVTALKAGEDRAILLGLAMMVCSIM
: : :: .: . . .::::::..::.::: :..
CCDS43 MTAFPASGKKRETDYSDGDPLDVHKRLPS-SAGEDRAVMLGFAMMGFSVL
10 20 30 40
70 80 90 100 110
pF1KB4 MYFLLGITLLRSYMQSVWTEESQCTLLNASITETF-NCSFSCGPDCWKLSQYPCLQVYVN
:.:::: :.:. .: :. ::: :: ....: . . .:.:.:: : ..::::::.::
CCDS43 MFFLLGTTILKPFMLSIQREESTCTAIHTDIMDDWLDCAFTCGVHCHGQGKYPCLQVFVN
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB4 LTSSGEKLLLYHTEETIKINQKCSYIPKCGKNFEESMSLVNVVMENF--RKYQHFSCYSD
:. :.: ::...::...:: :: : ::: .. .. .. . . : : .. :::. .
CCDS43 LSHPGQKALLHYNEEAVQINPKCFYTPKCHQDRNDLLNSALDIKEFFDHKNGTPFSCFYS
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB4 PEGNQKSVILTKLYSSNVLFHSLFWPTCMMAGGVAIVAMVKLTQYLSLLCERIQRINR
: .....::: : :.. ..:: ::::. . ::. ::.::.:::.::::::. . . :
CCDS43 PASQSEDVILIKKYDQMAIFHCLFWPSLTLLGGALIVGMVRLTQHLSLLCEKYSTVVRDE
170 180 190 200 210 220
CCDS43 VGGKVPYIEQHQFKLCIMRRSKGRAEKS
230 240 250
>>CCDS43173.1 KCNMB3 gene_id:27094|Hs108|chr3 (275 aa)
initn: 593 init1: 224 opt: 633 Z-score: 760.9 bits: 148.4 E(32554): 4.6e-36
Smith-Waterman score: 633; 43.9% identity (74.1% similar) in 212 aa overlap (27-235:35-245)
10 20 30 40 50
pF1KB4 MFIWTSGRTSSSYRHDEKRNIYQKIRDHDLLDKRKTVTALKAGEDRAILLGLAMMV
: : :: .: . . .::::::..::.:::
CCDS43 LYELTAVSPSPFPQRTAFPASGKKRETDYSDGDPLDVHKRLPS-SAGEDRAVMLGFAMMG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 CSIMMYFLLGITLLRSYMQSVWTEESQCTLLNASITETF-NCSFSCGPDCWKLSQYPCLQ
:..:.:::: :.:. .: :. ::: :: ....: . . .:.:.:: : ..:::::
CCDS43 FSVLMFFLLGTTILKPFMLSIQREESTCTAIHTDIMDDWLDCAFTCGVHCHGQGKYPCLQ
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 VYVNLTSSGEKLLLYHTEETIKINQKCSYIPKCGKNFEESMSLVNVVMENF--RKYQHFS
:.:::. :.: ::...::...:: :: : ::: .. .. .. . . : : .. ::
CCDS43 VFVNLSHPGQKALLHYNEEAVQINPKCFYTPKCHQDRNDLLNSALDIKEFFDHKNGTPFS
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB4 CYSDPEGNQKSVILTKLYSSNVLFHSLFWPTCMMAGGVAIVAMVKLTQYLSLLCERIQRI
:. .: .....::: : :.. ..:: ::::. . ::. ::.::.:::.::::::. . .
CCDS43 CFYSPASQSEDVILIKKYDQMAIFHCLFWPSLTLLGGALIVGMVRLTQHLSLLCEKYSTV
190 200 210 220 230 240
pF1KB4 NR
:
CCDS43 VRDEVGGKVPYIEQHQFKLCIMRRSKGRAEKS
250 260 270
>>CCDS3226.1 KCNMB3 gene_id:27094|Hs108|chr3 (279 aa)
initn: 593 init1: 224 opt: 633 Z-score: 760.8 bits: 148.4 E(32554): 4.7e-36
Smith-Waterman score: 633; 43.9% identity (74.1% similar) in 212 aa overlap (27-235:39-249)
10 20 30 40 50
pF1KB4 MFIWTSGRTSSSYRHDEKRNIYQKIRDHDLLDKRKTVTALKAGEDRAILLGLAMMV
: : :: .: . . .::::::..::.:::
CCDS32 LGFHFVAFILLTRHRTAFPASGKKRETDYSDGDPLDVHKRLPS-SAGEDRAVMLGFAMMG
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB4 CSIMMYFLLGITLLRSYMQSVWTEESQCTLLNASITETF-NCSFSCGPDCWKLSQYPCLQ
:..:.:::: :.:. .: :. ::: :: ....: . . .:.:.:: : ..:::::
CCDS32 FSVLMFFLLGTTILKPFMLSIQREESTCTAIHTDIMDDWLDCAFTCGVHCHGQGKYPCLQ
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB4 VYVNLTSSGEKLLLYHTEETIKINQKCSYIPKCGKNFEESMSLVNVVMENF--RKYQHFS
:.:::. :.: ::...::...:: :: : ::: .. .. .. . . : : .. ::
CCDS32 VFVNLSHPGQKALLHYNEEAVQINPKCFYTPKCHQDRNDLLNSALDIKEFFDHKNGTPFS
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB4 CYSDPEGNQKSVILTKLYSSNVLFHSLFWPTCMMAGGVAIVAMVKLTQYLSLLCERIQRI
:. .: .....::: : :.. ..:: ::::. . ::. ::.::.:::.::::::. . .
CCDS32 CFYSPASQSEDVILIKKYDQMAIFHCLFWPSLTLLGGALIVGMVRLTQHLSLLCEKYSTV
190 200 210 220 230 240
pF1KB4 NR
:
CCDS32 VRDEVGGKVPYIEQHQFKLCIMRRSKGRAEKS
250 260 270
>>CCDS4373.1 KCNMB1 gene_id:3779|Hs108|chr5 (191 aa)
initn: 532 init1: 339 opt: 534 Z-score: 645.4 bits: 126.5 E(32554): 1.2e-29
Smith-Waterman score: 534; 43.5% identity (73.1% similar) in 193 aa overlap (34-226:3-187)
10 20 30 40 50 60
pF1KB4 WTSGRTSSSYRHDEKRNIYQKIRDHDLLDKRKTVTALKAGEDRAILLGLAMMVCSIMMYF
.: : : : :: ::. ::..:.::... :.
CCDS43 MVKKLVMAQKRGETRALCLGVTMVVCAVITYY
10 20 30
70 80 90 100 110 120
pF1KB4 LLGITLLRSYMQSVWTEESQCTLLNASITETFNCSFSCGPDCWKLSQYPCLQVYVNLTSS
.: :.: :..::::.::.: :....: . . . : :. ::::: .::....
CCDS43 ILVTTVLPLYQKSVWTQESKCHLIETNIRDQEELK---GK---KVPQYPCL--WVNVSAA
40 50 60 70 80
130 140 150 160 170 180
pF1KB4 GEKLLLYHTEETIKINQKCSYIPKCGKNFEESMSLVNVVMENFRKYQHFSCYSDPEGNQK
:. .:::::.: ::.::::: :.. . . :. : .:.. : : :.: :.::.
CCDS43 GRWAVLYHTEDTRDQNQQCSYIPGSVDNYQTARADVEKVRAKFQEQQVFYCFSAPRGNET
90 100 110 120 130 140
190 200 210 220 230
pF1KB4 SVILTKLYSSNVLFHSLFWPTCMMAGGVAIVAMVKLTQYLSLLCERIQRINR
::.. .::. ..:. :::::: ...::. :.:::: .::::.:
CCDS43 SVLFQRLYGPQALLFSLFWPTFLLTGGLLIIAMVKSNQYLSILAAQK
150 160 170 180 190
>>CCDS8997.1 KCNMB4 gene_id:27345|Hs108|chr12 (210 aa)
initn: 332 init1: 243 opt: 419 Z-score: 507.8 bits: 101.1 E(32554): 5.8e-22
Smith-Waterman score: 419; 32.4% identity (65.2% similar) in 210 aa overlap (31-232:1-206)
10 20 30 40 50 60
pF1KB4 MFIWTSGRTSSSYRHDEKRNIYQKIRDHDLLDKRKTVTALKAGEDRAILLGLAMMVCSIM
. : ... .::..: ::: ... ...
CCDS89 MAKLRVAYEYTEAEDKSIRLGLFLIISGVV
10 20 30
70 80 90 100 110
pF1KB4 MYFLLGITLLRSYMQSVWTEESQCTLLNAS-ITETFNCSFSCGPDCWKLSQYPCLQVYVN
:..:. : .:.. . :..::.:... : :.:.:.:.:: :: :::::.:::::
CCDS89 SLFIFGFCWLSPALQDLQATEANCTVLSVQQIGEVFECTFTCGADCRGTSQYPCVQVYVN
40 50 60 70 80 90
120 130 140 150 160 170
pF1KB4 LTSSGEKLLLYHTEETIKINQKCSYIPKCGKNFEESMSLVNVVMENFRKY-------QHF
. :. . ::. :. . : :::::: : . :... .. :: :...: : :
CCDS89 NSESNSRALLHSDEHQLLTNPKCSYIPPCKR---ENQKNLESVM-NWQQYWKDEIGSQPF
100 110 120 130 140
180 190 200 210 220 230
pF1KB4 SCYSDPEGNQKSVILTKLYSSNVLFHSLFWPTCMMAGGVAIVAMVKLTQYLSLLCERIQR
.:: . . .:.: . .. ::.: ..:: .. :: ::... .. :.. : ...
CCDS89 TCYFNQHQRPDDVLLHRTHDEIVLLHCFLWPLVTFVVGVLIVVLTICAKSLAVKAEAMKK
150 160 170 180 190 200
pF1KB4 INR
CCDS89 RKFS
210
>>CCDS54683.1 KCNMB3 gene_id:27094|Hs108|chr3 (173 aa)
initn: 335 init1: 192 opt: 381 Z-score: 463.9 bits: 92.7 E(32554): 1.6e-19
Smith-Waterman score: 381; 39.2% identity (71.2% similar) in 153 aa overlap (7-158:20-167)
10 20 30 40
pF1KB4 MFIWTSGRTSSSYRHDEKRNIYQKIRDHDLLDKRKTVTALKAGEDRA
:::. .... :. : : :: .: . . .::::::
CCDS54 MQPFSIPVQITLQGSRRRQGRTAFPASGKKRETDYS---DGDPLDVHKRLPS-SAGEDRA
10 20 30 40 50
50 60 70 80 90 100
pF1KB4 ILLGLAMMVCSIMMYFLLGITLLRSYMQSVWTEESQCTLLNASITETF-NCSFSCGPDCW
..::.::: :..:.:::: :.:. .: :. ::: :: ....: . . .:.:.:: :
CCDS54 VMLGFAMMGFSVLMFFLLGTTILKPFMLSIQREESTCTAIHTDIMDDWLDCAFTCGVHCH
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB4 KLSQYPCLQVYVNLTSSGEKLLLYHTEETIKINQKCSYIPKCGKNFEESMSLVNVVMENF
..::::::.:::. :.: ::...::...:: : . . : . ......
CCDS54 GQGKYPCLQVFVNLSHPGQKALLHYNEEAVQINPKRD-VTDCRVKEKQTLTVSDEHKQ
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB4 RKYQHFSCYSDPEGNQKSVILTKLYSSNVLFHSLFWPTCMMAGGVAIVAMVKLTQYLSLL
235 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:46:35 2016 done: Sat Nov 5 05:46:35 2016
Total Scan time: 2.050 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]