FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4255, 245 aa
  1>>>pF1KB4255 245 - 245 aa - 245 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 14.0462+/-0.00118; mu= -20.1898+/- 0.071
 mean_var=775.3939+/-162.579, 0's: 0 Z-trim(119.5): 107  B-trim: 562 in 1/54
 Lambda= 0.046059
 statistics sampled from 20698 (20816) to 20698 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.85), E-opt: 0.2 (0.639), width:  16
 Scan time:  2.920

The best scores are:                                      opt bits E(32554)
CCDS32085.1 MAPK1IP1L gene_id:93487|Hs108|chr14    ( 245) 1924 141.4 5.3e-34


>>CCDS32085.1 MAPK1IP1L gene_id:93487|Hs108|chr14         (245 aa)
 initn: 1924 init1: 1924 opt: 1924  Z-score: 723.9  bits: 141.4 E(32554): 5.3e-34
Smith-Waterman score: 1924; 100.0% identity (100.0% similar) in 245 aa overlap (1-245:1-245)

               10        20        30        40        50        60
pF1KB4 MSDEFSLADALPEHSPAKTSAVSNTKPGQPPQGWPGSNPWNNPSAPSSVPSGLPPSATPS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MSDEFSLADALPEHSPAKTSAVSNTKPGQPPQGWPGSNPWNNPSAPSSVPSGLPPSATPS
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 TVPFGPAPTGMYPSVPPTGPPPGPPAPFPPSGPSCPPPGGPYPAPTVPGPGPTGPYPTPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 TVPFGPAPTGMYPSVPPTGPPPGPPAPFPPSGPSCPPPGGPYPAPTVPGPGPTGPYPTPN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 MPFPELPRPYGAPTDPAAAGPLGPWGSMSSGPWAPGMGGQYPTPNMPYPSPGPYPAPPPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MPFPELPRPYGAPTDPAAAGPLGPWGSMSSGPWAPGMGGQYPTPNMPYPSPGPYPAPPPP
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 QAPGAAPPVPWGTVPPGAWGPPAPYPAPTGSYPTPGLYPTPSNPFQVPSGPSGAPPMPGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 QAPGAAPPVPWGTVPPGAWGPPAPYPAPTGSYPTPGLYPTPSNPFQVPSGPSGAPPMPGG
              190       200       210       220       230       240

            
pF1KB4 PHSYH
       :::::
CCDS32 PHSYH
            




245 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:44:45 2016 done: Sat Nov  5 05:44:46 2016
 Total Scan time:  2.920 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]