FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4190, 364 aa
  1>>>pF1KB4190 364 - 364 aa - 364 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.9374+/-0.000884; mu= 18.1488+/- 0.053
 mean_var=62.8425+/-13.360, 0's: 0 Z-trim(105.4): 27  B-trim: 0 in 0/47
 Lambda= 0.161788
 statistics sampled from 8363 (8383) to 8363 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.624), E-opt: 0.2 (0.258), width:  16
 Scan time:  2.830

The best scores are:                                      opt bits E(32554)
CCDS7914.1 SLC35C1 gene_id:55343|Hs108|chr11       ( 364) 2392 567.1 8.4e-162
CCDS44575.1 SLC35C1 gene_id:55343|Hs108|chr11      ( 351) 2306 547.0  9e-156


>>CCDS7914.1 SLC35C1 gene_id:55343|Hs108|chr11            (364 aa)
 initn: 2392 init1: 2392 opt: 2392  Z-score: 3018.4  bits: 567.1 E(32554): 8.4e-162
Smith-Waterman score: 2392; 100.0% identity (100.0% similar) in 364 aa overlap (1-364:1-364)

               10        20        30        40        50        60
pF1KB4 MNRAPLKRSRILHMALTGASDPSAEAEANGEKPFLLRALQIALVVSLYWVTSISMVFLNK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 MNRAPLKRSRILHMALTGASDPSAEAEANGEKPFLLRALQIALVVSLYWVTSISMVFLNK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 YLLDSPSLRLDTPIFVTFYQCLVTTLLCKGLSALAACCPGAVDFPSLRLDLRVARSVLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 YLLDSPSLRLDTPIFVTFYQCLVTTLLCKGLSALAACCPGAVDFPSLRLDLRVARSVLPL
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 SVVFIGMITFNNLCLKYVGVAFYNVGRSLTTVFNVLLSYLLLKQTTSFYALLTCGIIIGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 SVVFIGMITFNNLCLKYVGVAFYNVGRSLTTVFNVLLSYLLLKQTTSFYALLTCGIIIGG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 FWLGVDQEGAEGTLSWLGTVFGVLASLCVSLNAIYTTKVLPAVDGSIWRLTFYNNVNACI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 FWLGVDQEGAEGTLSWLGTVFGVLASLCVSLNAIYTTKVLPAVDGSIWRLTFYNNVNACI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 LFLPLLLLLGELQALRDFAQLGSAHFWGMMTLGGLFGFAIGYVTGLQIKFTSPLTHNVSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 LFLPLLLLLGELQALRDFAQLGSAHFWGMMTLGGLFGFAIGYVTGLQIKFTSPLTHNVSG
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 TAKACAQTVLAVLYYEETKSFLWWTSNMMVLGGSSAYTWVRGWEMKKTPEEPSPKDSEKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS79 TAKACAQTVLAVLYYEETKSFLWWTSNMMVLGGSSAYTWVRGWEMKKTPEEPSPKDSEKS
              310       320       330       340       350       360

           
pF1KB4 AMGV
       ::::
CCDS79 AMGV
           

>>CCDS44575.1 SLC35C1 gene_id:55343|Hs108|chr11           (351 aa)
 initn: 2306 init1: 2306 opt: 2306  Z-score: 2910.1  bits: 547.0 E(32554): 9e-156
Smith-Waterman score: 2306; 100.0% identity (100.0% similar) in 351 aa overlap (14-364:1-351)

               10        20        30        40        50        60
pF1KB4 MNRAPLKRSRILHMALTGASDPSAEAEANGEKPFLLRALQIALVVSLYWVTSISMVFLNK
                    :::::::::::::::::::::::::::::::::::::::::::::::
CCDS44              MALTGASDPSAEAEANGEKPFLLRALQIALVVSLYWVTSISMVFLNK
                            10        20        30        40       

               70        80        90       100       110       120
pF1KB4 YLLDSPSLRLDTPIFVTFYQCLVTTLLCKGLSALAACCPGAVDFPSLRLDLRVARSVLPL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 YLLDSPSLRLDTPIFVTFYQCLVTTLLCKGLSALAACCPGAVDFPSLRLDLRVARSVLPL
        50        60        70        80        90       100       

              130       140       150       160       170       180
pF1KB4 SVVFIGMITFNNLCLKYVGVAFYNVGRSLTTVFNVLLSYLLLKQTTSFYALLTCGIIIGG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 SVVFIGMITFNNLCLKYVGVAFYNVGRSLTTVFNVLLSYLLLKQTTSFYALLTCGIIIGG
       110       120       130       140       150       160       

              190       200       210       220       230       240
pF1KB4 FWLGVDQEGAEGTLSWLGTVFGVLASLCVSLNAIYTTKVLPAVDGSIWRLTFYNNVNACI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 FWLGVDQEGAEGTLSWLGTVFGVLASLCVSLNAIYTTKVLPAVDGSIWRLTFYNNVNACI
       170       180       190       200       210       220       

              250       260       270       280       290       300
pF1KB4 LFLPLLLLLGELQALRDFAQLGSAHFWGMMTLGGLFGFAIGYVTGLQIKFTSPLTHNVSG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 LFLPLLLLLGELQALRDFAQLGSAHFWGMMTLGGLFGFAIGYVTGLQIKFTSPLTHNVSG
       230       240       250       260       270       280       

              310       320       330       340       350       360
pF1KB4 TAKACAQTVLAVLYYEETKSFLWWTSNMMVLGGSSAYTWVRGWEMKKTPEEPSPKDSEKS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TAKACAQTVLAVLYYEETKSFLWWTSNMMVLGGSSAYTWVRGWEMKKTPEEPSPKDSEKS
       290       300       310       320       330       340       

           
pF1KB4 AMGV
       ::::
CCDS44 AMGV
       350 




364 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:42:24 2016 done: Sat Nov  5 05:42:24 2016
 Total Scan time:  2.830 Total Display time: -0.010

Function used was FASTA [36.3.4 Apr, 2011]