Result of FASTA (ccds) for
pF1KB4185
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4185, 385 aa
1>>>pF1KB4185 385 - 385 aa - 385 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9403+/-0.000931; mu= 13.8912+/- 0.056
mean_var=79.2941+/-15.734, 0's: 0 Z-trim(106.5): 126 B-trim: 24 in 1/50
Lambda= 0.144030
statistics sampled from 8862 (8991) to 8862 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.651), E-opt: 0.2 (0.276), width: 16
Scan time: 2.380
The best scores are: opt bits E(32554)
CCDS5063.1 NR2E1 gene_id:7101|Hs108|chr6 ( 385) 2557 541.0 6.9e-154
CCDS69165.1 NR2E1 gene_id:7101|Hs108|chr6 ( 422) 2505 530.2 1.3e-150
CCDS73750.1 NR2E3 gene_id:10002|Hs108|chr15 ( 410) 1059 229.7 3.7e-60
CCDS73751.1 NR2E3 gene_id:10002|Hs108|chr15 ( 367) 880 192.5 5.3e-49
CCDS4068.1 NR2F1 gene_id:7025|Hs108|chr5 ( 423) 552 124.4 2e-28
CCDS10375.1 NR2F2 gene_id:7026|Hs108|chr15 ( 414) 541 122.1 9.3e-28
CCDS12352.1 NR2F6 gene_id:2063|Hs108|chr19 ( 404) 540 121.8 1.1e-27
CCDS45359.1 NR2F2 gene_id:7026|Hs108|chr15 ( 261) 532 120.1 2.3e-27
CCDS45358.1 NR2F2 gene_id:7026|Hs108|chr15 ( 281) 532 120.1 2.5e-27
CCDS5234.1 ESR1 gene_id:2099|Hs108|chr6 ( 595) 476 108.6 1.5e-23
CCDS54994.1 PPARD gene_id:5467|Hs108|chr6 ( 402) 431 99.2 6.9e-21
CCDS4803.1 PPARD gene_id:5467|Hs108|chr6 ( 441) 431 99.2 7.5e-21
CCDS33669.1 PPARA gene_id:5465|Hs108|chr22 ( 468) 425 98.0 1.9e-20
CCDS2610.2 PPARG gene_id:5468|Hs108|chr3 ( 477) 393 91.3 1.9e-18
CCDS2609.1 PPARG gene_id:5468|Hs108|chr3 ( 505) 393 91.4 2e-18
CCDS3772.1 NR3C2 gene_id:4306|Hs108|chr4 ( 984) 394 91.7 3.1e-18
CCDS4804.1 PPARD gene_id:5467|Hs108|chr6 ( 361) 384 89.4 5.5e-18
CCDS68131.1 HNF4A gene_id:3172|Hs108|chr20 ( 395) 376 87.8 1.9e-17
CCDS13331.1 HNF4A gene_id:3172|Hs108|chr20 ( 417) 376 87.8 2e-17
CCDS46604.1 HNF4A gene_id:3172|Hs108|chr20 ( 442) 376 87.8 2.1e-17
CCDS74728.1 HNF4A gene_id:3172|Hs108|chr20 ( 449) 376 87.8 2.1e-17
CCDS42876.1 HNF4A gene_id:3172|Hs108|chr20 ( 452) 376 87.8 2.1e-17
CCDS46605.1 HNF4A gene_id:3172|Hs108|chr20 ( 464) 376 87.8 2.2e-17
CCDS13330.1 HNF4A gene_id:3172|Hs108|chr20 ( 474) 376 87.8 2.2e-17
CCDS1004.1 RORC gene_id:6097|Hs108|chr1 ( 518) 375 87.6 2.7e-17
CCDS72970.1 RXRG gene_id:6258|Hs108|chr1 ( 340) 371 86.7 3.4e-17
CCDS35172.1 RXRA gene_id:6256|Hs108|chr9 ( 462) 371 86.8 4.4e-17
CCDS1248.1 RXRG gene_id:6258|Hs108|chr1 ( 463) 371 86.8 4.4e-17
CCDS83303.1 HNF4G gene_id:3174|Hs108|chr8 ( 408) 369 86.3 5.3e-17
CCDS6220.2 HNF4G gene_id:3174|Hs108|chr8 ( 445) 369 86.3 5.7e-17
CCDS30856.1 RORC gene_id:6097|Hs108|chr1 ( 497) 367 85.9 8.4e-17
CCDS74905.1 NR2C2 gene_id:7182|Hs108|chr3 ( 596) 365 85.6 1.3e-16
CCDS2621.1 NR2C2 gene_id:7182|Hs108|chr3 ( 615) 365 85.6 1.3e-16
CCDS10177.1 RORA gene_id:6095|Hs108|chr15 ( 523) 362 84.9 1.8e-16
CCDS4768.1 RXRB gene_id:6257|Hs108|chr6 ( 533) 362 84.9 1.8e-16
CCDS59007.1 RXRB gene_id:6257|Hs108|chr6 ( 537) 362 84.9 1.8e-16
CCDS10178.1 RORA gene_id:6095|Hs108|chr15 ( 548) 362 84.9 1.9e-16
CCDS41821.1 NR2C1 gene_id:7181|Hs108|chr12 ( 467) 355 83.4 4.5e-16
CCDS45271.1 RORA gene_id:6095|Hs108|chr15 ( 468) 355 83.4 4.5e-16
CCDS44953.1 NR2C1 gene_id:7181|Hs108|chr12 ( 483) 355 83.4 4.6e-16
CCDS9051.1 NR2C1 gene_id:7181|Hs108|chr12 ( 603) 355 83.5 5.6e-16
CCDS10179.1 RORA gene_id:6095|Hs108|chr15 ( 556) 353 83.1 6.9e-16
CCDS6646.1 RORB gene_id:6096|Hs108|chr9 ( 459) 343 80.9 2.5e-15
CCDS42316.1 THRA gene_id:7067|Hs108|chr17 ( 410) 341 80.5 3e-15
CCDS58546.1 THRA gene_id:7067|Hs108|chr17 ( 451) 341 80.5 3.3e-15
CCDS58236.1 RARG gene_id:5916|Hs108|chr12 ( 382) 340 80.3 3.3e-15
CCDS11360.1 THRA gene_id:7067|Hs108|chr17 ( 490) 341 80.5 3.5e-15
CCDS41790.1 RARG gene_id:5916|Hs108|chr12 ( 443) 340 80.3 3.7e-15
CCDS8850.1 RARG gene_id:5916|Hs108|chr12 ( 454) 340 80.3 3.8e-15
CCDS2642.1 RARB gene_id:5915|Hs108|chr3 ( 448) 338 79.9 5e-15
>>CCDS5063.1 NR2E1 gene_id:7101|Hs108|chr6 (385 aa)
initn: 2557 init1: 2557 opt: 2557 Z-score: 2876.2 bits: 541.0 E(32554): 6.9e-154
Smith-Waterman score: 2557; 100.0% identity (100.0% similar) in 385 aa overlap (1-385:1-385)
10 20 30 40 50 60
pF1KB4 MSKPAGSTSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 MSKPAGSTSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIRRNRTYVCKSGNQGGC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 PVDKTHRNQCRACRLKKCLEVNMNKDAVQHERGPRTSTIRKQVALYFRGHKEENGAAAHF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 PVDKTHRNQCRACRLKKCLEVNMNKDAVQHERGPRTSTIRKQVALYFRGHKEENGAAAHF
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 PSAALPAPAFFTAVTQLEPHGLELAAVSTTPERQTLVSLAQPTPKYPHEVNGTPMYLYEV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 PSAALPAPAFFTAVTQLEPHGLELAAVSTTPERQTLVSLAQPTPKYPHEVNGTPMYLYEV
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 ATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDAN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 ATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDAN
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 TLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 TLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTH
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 SGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS50 SGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEE
310 320 330 340 350 360
370 380
pF1KB4 VFFKKTIGNVPITRLLSDMYKSSDI
:::::::::::::::::::::::::
CCDS50 VFFKKTIGNVPITRLLSDMYKSSDI
370 380
>>CCDS69165.1 NR2E1 gene_id:7101|Hs108|chr6 (422 aa)
initn: 2501 init1: 2501 opt: 2505 Z-score: 2817.2 bits: 530.2 E(32554): 1.3e-150
Smith-Waterman score: 2505; 98.2% identity (99.0% similar) in 385 aa overlap (1-385:41-422)
10 20 30
pF1KB4 MSKPAGSTSRILDIPCKVCGDRSSGKHYGV
. .:.: :::::::::::::::::::::
CCDS69 KEPSPRPECRADPGPGLGFPLGSGLPWPSLLESPGG---RILDIPCKVCGDRSSGKHYGV
20 30 40 50 60
40 50 60 70 80 90
pF1KB4 YACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 YACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQH
70 80 90 100 110 120
100 110 120 130 140 150
pF1KB4 ERGPRTSTIRKQVALYFRGHKEENGAAAHFPSAALPAPAFFTAVTQLEPHGLELAAVSTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 ERGPRTSTIRKQVALYFRGHKEENGAAAHFPSAALPAPAFFTAVTQLEPHGLELAAVSTT
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB4 PERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVCESAARLLFMSIKWAKSVPAFSTLS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 PERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVCESAARLLFMSIKWAKSVPAFSTLS
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB4 LQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 LQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQE
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB4 VVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIH
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 VVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIH
310 320 330 340 350 360
340 350 360 370 380
pF1KB4 TRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLSDMYKSSDI
:::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS69 TRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLSDMYKSSDI
370 380 390 400 410 420
>>CCDS73750.1 NR2E3 gene_id:10002|Hs108|chr15 (410 aa)
initn: 1058 init1: 377 opt: 1059 Z-score: 1193.6 bits: 229.7 E(32554): 3.7e-60
Smith-Waterman score: 1059; 44.1% identity (70.7% similar) in 392 aa overlap (4-382:38-410)
10 20 30
pF1KB4 MSKPAGSTSRILDIPCKVCGDRSSGKHYGVYAC
:.: . .. :.:::: :::::::.:::
CCDS73 LMSSTVAAAAPAAGAASRKESPGRWGLGEDPTGVSP---SLQCRVCGDSSSGKHYGIYAC
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB4 DGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQHERG
.:::::::::.:: : :. : : :::::.:::::.::::::::...::.::::.::
CCDS73 NGCSGFFKRSVRRRLIYRCQVGA-GMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQNERQ
70 80 90 100 110 120
100 110 120 130 140
pF1KB4 PRTSTIRKQVAL-YFRGHKE---ENGAAAHFPSAALP-APAFFTAVTQLEPHGLELAAVS
::... :: : .... : :. .: :.. : .:. ..:. : : . ..
CCDS73 PRSTA---QVHLDSMESNTESRPESLVAPPAPAGRSPRGPTPMSAARALGHHFMASLITA
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB4 TT-----PERQTL-VSLAQPTPKYPHE--VNGTPMYLYEVATESVCESAARLLFMSIKWA
: :: ..... :..: ...: : .:. :..::::::..:::
CCDS73 ETCAKLEPEDADENIDVTSNDPEFPSSPYSSSSPCGL-----DSIHETSARLLFMAVKWA
190 200 210 220 230
210 220 230 240 250 260
pF1KB4 KSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNK
:..:.::.: ..::..:::.:: :::.:: ::..:.:. ::: .. . . .:.
CCDS73 KNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTL
240 250 260 270 280 290
270 280 290 300 310 320
pF1KB4 IISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDE
: ..:::...::: : .: :::::.: .: :: : : :.... . ::::.
CCDS73 ASMETRVLQETISRFRALAVDPTEFACMKALVLFK--P-----ETRGLKDPEHVEALQDQ
300 310 320 330 340
330 340 350 360 370 380
pF1KB4 AQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLSDMY
.:. :... ....:.:: ::::::::::.:: :. :: .::.:::::.:. .:: ::.
CCDS73 SQVMLSQHSKAHHPSQPVRFGKLLLLLPSLRFITAERIELLFFRKTIGNTPMEKLLCDMF
350 360 370 380 390 400
pF1KB4 KSSDI
:.
CCDS73 KN
410
>>CCDS73751.1 NR2E3 gene_id:10002|Hs108|chr15 (367 aa)
initn: 874 init1: 377 opt: 880 Z-score: 993.3 bits: 192.5 E(32554): 5.3e-49
Smith-Waterman score: 880; 41.8% identity (69.1% similar) in 349 aa overlap (4-339:38-367)
10 20 30
pF1KB4 MSKPAGSTSRILDIPCKVCGDRSSGKHYGVYAC
:.: . .. :.:::: :::::::.:::
CCDS73 LMSSTVAAAAPAAGAASRKESPGRWGLGEDPTGVSP---SLQCRVCGDSSSGKHYGIYAC
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB4 DGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQHERG
.:::::::::.:: : :. : : :::::.:::::.::::::::...::.::::.::
CCDS73 NGCSGFFKRSVRRRLIYRCQVGA-GMCPVDKAHRNQCQACRLKKCLQAGMNQDAVQNERQ
70 80 90 100 110 120
100 110 120 130 140
pF1KB4 PRTSTIRKQVAL-YFRGHKE---ENGAAAHFPSAALP-APAFFTAVTQLEPHGLELAAVS
::... :: : .... : :. .: :.. : .:. ..:. : : . ..
CCDS73 PRSTA---QVHLDSMESNTESRPESLVAPPAPAGRSPRGPTPMSAARALGHHFMASLITA
130 140 150 160 170 180
150 160 170 180 190 200
pF1KB4 TT-----PERQTL-VSLAQPTPKYPHE--VNGTPMYLYEVATESVCESAARLLFMSIKWA
: :: ..... :..: ...: : .:. :..::::::..:::
CCDS73 ETCAKLEPEDADENIDVTSNDPEFPSSPYSSSSPCGL-----DSIHETSARLLFMAVKWA
190 200 210 220 230
210 220 230 240 250 260
pF1KB4 KSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNK
:..:.::.: ..::..:::.:: :::.:: ::..:.:. ::: .. . . .:.
CCDS73 KNLPVFSSLPFRDQVILLEEAWSELFLLGAIQWSLPLDSCPLLAPPEASAAGGAQGRLTL
240 250 260 270 280 290
270 280 290 300 310 320
pF1KB4 IISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDE
: ..:::...::: : .: :::::.: .: :: : : :.... . ::::.
CCDS73 ASMETRVLQETISRFRALAVDPTEFACMKALVLFK--P-----ETRGLKDPEHVEALQDQ
300 310 320 330 340
330 340 350 360 370 380
pF1KB4 AQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLSDMY
.:. :... ....:.:: :
CCDS73 SQVMLSQHSKAHHPSQPVR
350 360
>>CCDS4068.1 NR2F1 gene_id:7025|Hs108|chr5 (423 aa)
initn: 951 init1: 302 opt: 552 Z-score: 624.0 bits: 124.4 E(32554): 2e-28
Smith-Waterman score: 880; 38.1% identity (65.5% similar) in 383 aa overlap (4-382:74-409)
10 20 30
pF1KB4 MSKPAGSTSRILDIPCKVCGDRSSGKHYGVYAC
: :: . : : ::::.::::::: ..:
CCDS40 AGSGAPHTPQTPGQPGAPATPGTAGDKGQGPPGSGQSQQHIECVVCGDKSSGKHYGQFTC
50 60 70 80 90 100
40 50 60 70 80 90
pF1KB4 DGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQHERG
.::..:::::.::: ::.:... .::.:. :::::. :::::::.:.: ..:::. :
CCDS40 EGCKSFFKRSVRRNLTYTCRANR--NCPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRM
110 120 130 140 150 160
100 110 120 130 140
pF1KB4 PRTSTIRKQVALY----FRGHKEENGAAAHFPSAALPAPAFFTAVTQLEPHGLELAAVST
: :. : :: . :: .: ... . . ::.
CCDS40 PPTQPNPGQYALTNGDPLNGHCYLSG--------------YISLLLRAEPY---------
170 180 190
150 160 170 180 190 200
pF1KB4 TPERQTLVSLAQPTPKYPHEVNGTPMYLYEVATESVCESAARLLFMSIKWAKSVPAFSTL
:: .: . : .. . :..:: :::::: ...::...: : :
CCDS40 ------------PTSRYGSQCM-QPNNIMGI--ENICELAARLLFSAVEWARNIPFFPDL
200 210 220 230 240
210 220 230 240 250 260
pF1KB4 SLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQ
.. ::. ::. .: :::::. :: ..:. . :::..:.... ..... ....:. .:
CCDS40 QITDQVSLLRLTWSELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQ
250 260 270 280 290 300
270 280 290 300 310 320
pF1KB4 EVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYI
: : ... :..:..:..::: :: : :. .. .:: : .::...: .:. :.
CCDS40 EQVEKLKALHVDSAEYSCLKAIVLFT-------SDACGLSDAAHIESLQEKSQCALEEYV
310 320 330 340 350
330 340 350 360 370 380
pF1KB4 HTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLSDMYKSSDI
...::.:: ::::::: ::.::..: :.::..:: . .:..:: :. :: :
CCDS40 RSQYPNQPSRFGKLLLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWP
360 370 380 390 400 410
CCDS40 YMSIQCS
420
>>CCDS10375.1 NR2F2 gene_id:7026|Hs108|chr15 (414 aa)
initn: 924 init1: 312 opt: 541 Z-score: 611.8 bits: 122.1 E(32554): 9.3e-28
Smith-Waterman score: 863; 37.7% identity (67.2% similar) in 369 aa overlap (14-382:77-402)
10 20 30 40
pF1KB4 MSKPAGSTSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRS
: : ::::.::::::: ..:.::..:::::
CCDS10 GPASTPAQTAAGGQGGPGGPGSDKQQQQQHIECVVCGDKSSGKHYGQFTCEGCKSFFKRS
50 60 70 80 90 100
50 60 70 80 90 100
pF1KB4 IRRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQHERGPRTSTIRKQV
.::: .:.:... . ::.:. :::::. :::::::.:.: ..:::. : : :. . :
CCDS10 VRRNLSYTCRANRN--CPIDQHHRNQCQYCRLKKCLKVGMRREAVQRGRMPPTQPTHGQF
110 120 130 140 150 160
110 120 130 140 150 160
pF1KB4 ALYFRGHKEENGAAAHFPSAALPAPAFFTAVTQLEPHGLELAAVSTTPERQTLVSLAQPT
:: :: . : .... . . ::. : . . ::
CCDS10 AL-------TNGDPLNCHSYL---SGYISLLLRAEPY----------PTSRFGSQCMQP-
170 180 190 200
170 180 190 200 210 220
pF1KB4 PKYPHEVNGTPMYLYEVATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWR
... : :..:: :::.:: ...::...: : :.. ::. ::. .:
CCDS10 ----NNIMGI---------ENICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWS
210 220 230 240 250
230 240 250 260 270 280
pF1KB4 ELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDAT
:::::. :: ..:. . :::..:.... ..... ....:. .:: : ... :..:..
CCDS10 ELFVLNAAQCSMPLHVAPLLAAAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSA
260 270 280 290 300 310
290 300 310 320 330 340
pF1KB4 EFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKL
:..::: :: : :. .. ..: . .::...: .:. :....::.:: :::::
CCDS10 EYSCLKAIVLFT-------SDACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKL
320 330 340 350 360
350 360 370 380
pF1KB4 LLLLPALRSISPSTIEEVFFKKTIGNVPITRLLSDMYKSSDI
:: ::.::..: :.::..:: . .:..:: :. :: :
CCDS10 LLRLPSLRTVSSSVIEQLFFVRLVGKTPIETLIRDMLLSGSSFNWPYMAIQ
370 380 390 400 410
>>CCDS12352.1 NR2F6 gene_id:2063|Hs108|chr19 (404 aa)
initn: 846 init1: 300 opt: 540 Z-score: 610.8 bits: 121.8 E(32554): 1.1e-27
Smith-Waterman score: 858; 37.7% identity (66.5% similar) in 382 aa overlap (2-382:42-392)
10 20 30
pF1KB4 MSKPAGSTSRILDIPCKVCGDRSSGKHYGVY
..:. :.. : ::::.::::::::.
CCDS12 GGDTNGVDKAGGYPRAAEDDSASPPGAASDAEPGDEERPGLQVDCVVCGDKSSGKHYGVF
20 30 40 50 60 70
40 50 60 70 80 90
pF1KB4 ACDGCSGFFKRSIRRNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQHE
.:.::..::::::::: .:.:.:. . : .:. :::::. ::::::..:.: :.:::.
CCDS12 TCEGCKSFFKRSIRRNLSYTCRSNRD--CQIDQHHRNQCQYCRLKKCFRVGMRKEAVQRG
80 90 100 110 120
100 110 120 130 140 150
pF1KB4 RGPRTSTIRKQVALYFRGHKEENGAAAHFPSAALPAPAFFTAVTQLEPHGLELAAVSTTP
: : :. ...:: :.. : . ..::.. : .: . .
CCDS12 RIP---------------HSLPGAVAA---SSGSPPGSALAAVAS----GGDLFPGQPVS
130 140 150 160
160 170 180 190 200 210
pF1KB4 ERQTLVSLAQPTPKYPHEVN-GTPMYLYEVATESVCESAARLLFMSIKWAKSVPAFSTLS
: . . :.: : . . : .. ..::: :::::: ...::. .: : :
CCDS12 ELIAQLLRAEPYPAAAGRFGAGGGAAGAVLGIDNVCELAARLLFSTVEWARHAPFFPELP
170 180 190 200 210 220
220 230 240 250 260 270
pF1KB4 LQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQE
. ::. ::. .: :::::. :: :.:. . :::..:... ... ......:.::
CCDS12 VADQVALLRLSWSELFVLNAAQAALPLHTAPLLAAAGLHAAPMAAERAVAFMDQVRAFQE
230 240 250 260 270 280
280 290 300 310 320 330
pF1KB4 VVARFRQLRLDATEFACLKCIVTFKAVPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIH
: .. .:..:..:..::: :. : .: : . . : . .::..::..:. :..
CCDS12 QVDKLGRLQVDSAEYGCLKAIALF--TPDACG-----LSDPAHVESLQEKAQVALTEYVR
290 300 310 320 330 340
340 350 360 370 380
pF1KB4 TRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLSDMYKSSDI
..::.:: :::.::: :::::.. : : ..:: . .:..:: :. :: :
CCDS12 AQYPSQPQRFGRLLLRLPALRAVPASLISQLFFMRLVGKTPIETLIRDMLLSGSTFNWPY
350 360 370 380 390 400
CCDS12 GSGQ
>>CCDS45359.1 NR2F2 gene_id:7026|Hs108|chr15 (261 aa)
initn: 553 init1: 312 opt: 532 Z-score: 604.7 bits: 120.1 E(32554): 2.3e-27
Smith-Waterman score: 532; 36.4% identity (71.5% similar) in 228 aa overlap (157-382:29-249)
130 140 150 160 170 180
pF1KB4 APAFFTAVTQLEPHGLELAAVSTTPERQTLVSLAQPTPKYPHEVNGTPMYLYE--VATES
.:: . :: :. . . .. :.
CCDS45 MPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIEN
10 20 30 40 50
190 200 210 220 230 240
pF1KB4 VCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLA
.:: :::.:: ...::...: : :.. ::. ::. .: :::::. :: ..:. . :::
CCDS45 ICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLA
60 70 80 90 100 110
250 260 270 280 290 300
pF1KB4 VSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSE
..:.... ..... ....:. .:: : ... :..:..:..::: :: : :.
CCDS45 AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFT-------SD
120 130 140 150 160 170
310 320 330 340 350 360
pF1KB4 LRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFK
.. ..: . .::...: .:. :....::.:: ::::::: ::.::..: :.::..::
CCDS45 ACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFV
180 190 200 210 220 230
370 380
pF1KB4 KTIGNVPITRLLSDMYKSSDI
. .:..:: :. :: :
CCDS45 RLVGKTPIETLIRDMLLSGSSFNWPYMAIQ
240 250 260
>>CCDS45358.1 NR2F2 gene_id:7026|Hs108|chr15 (281 aa)
initn: 581 init1: 312 opt: 532 Z-score: 604.3 bits: 120.1 E(32554): 2.5e-27
Smith-Waterman score: 532; 36.4% identity (71.5% similar) in 228 aa overlap (157-382:49-269)
130 140 150 160 170 180
pF1KB4 APAFFTAVTQLEPHGLELAAVSTTPERQTLVSLAQPTPKYPHEVNGTPMYLYE--VATES
.:: . :: :. . . .. :.
CCDS45 GRMPPTQPTHGQFALTNGDPLNCHSYLSGYISLLLRAEPYPTSRFGSQCMQPNNIMGIEN
20 30 40 50 60 70
190 200 210 220 230 240
pF1KB4 VCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAWRELFVLGIAQWAIPVDANTLLA
.:: :::.:: ...::...: : :.. ::. ::. .: :::::. :: ..:. . :::
CCDS45 ICELAARMLFSAVEWARNIPFFPDLQITDQVALLRLTWSELFVLNAAQCSMPLHVAPLLA
80 90 100 110 120 130
250 260 270 280 290 300
pF1KB4 VSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDATEFACLKCIVTFKAVPTHSGSE
..:.... ..... ....:. .:: : ... :..:..:..::: :: : :.
CCDS45 AAGLHASPMSADRVVAFMDHIRIFQEQVEKLKALHVDSAEYSCLKAIVLFT-------SD
140 150 160 170 180 190
310 320 330 340 350 360
pF1KB4 LRSFRNAAAIAALQDEAQLTLNSYIHTRYPTQPCRFGKLLLLLPALRSISPSTIEEVFFK
.. ..: . .::...: .:. :....::.:: ::::::: ::.::..: :.::..::
CCDS45 ACGLSDVAHVESLQEKSQCALEEYVRSQYPNQPTRFGKLLLRLPSLRTVSSSVIEQLFFV
200 210 220 230 240 250
370 380
pF1KB4 KTIGNVPITRLLSDMYKSSDI
. .:..:: :. :: :
CCDS45 RLVGKTPIETLIRDMLLSGSSFNWPYMAIQ
260 270 280
>>CCDS5234.1 ESR1 gene_id:2099|Hs108|chr6 (595 aa)
initn: 483 init1: 189 opt: 476 Z-score: 536.4 bits: 108.6 E(32554): 1.5e-23
Smith-Waterman score: 574; 32.1% identity (60.9% similar) in 371 aa overlap (16-379:185-543)
10 20 30 40
pF1KB4 MSKPAGSTSRILDIPCKVCGDRSSGKHYGVYACDGCSGFFKRSIR
: ::.: .:: ::::..:.::..::::::.
CCDS52 DNRRQGGRERLASTNDKGSMAMESAKETRYCAVCNDYASGYHYGVWSCEGCKAFFKRSIQ
160 170 180 190 200 210
50 60 70 80 90 100
pF1KB4 RNRTYVCKSGNQGGCPVDKTHRNQCRACRLKKCLEVNMNKDAVQHER-GPRTSTIRKQVA
. :.: . :: : .::..:..:.::::.:: ::.: : .....: : : ..:
CCDS52 GHNDYMCPATNQ--CTIDKNRRKSCQACRLRKCYEVGMMKGGIRKDRRGGRMLKHKRQRD
220 230 240 250 260 270
110 120 130 140 150 160
pF1KB4 LYFRGH-KEENGAAAHFPSAAL-PAPAFFTAVTQLEPHGLELAAVSTTPERQTLVSLAQP
:. . : :.:. . .: : :.: . . . . ..: :.: : .... . :
CCDS52 ---DGEGRGEVGSAGDMRAANLWPSPLM---IKRSKKNSL---ALSLTADQMVSALLDAE
280 290 300 310 320
170 180 190 200 210 220
pF1KB4 TPKYPHEVNGTPMYLYEVATESVCESAARLLFMSIKWAKSVPAFSTLSLQDQLMLLEDAW
: : . : . . . : : : :.::: ::.: :.:.::. ::: ::
CCDS52 PPILYSEYDPTRPFSEASMMGLLTNLADRELVHMINWAKRVPGFVDLTLHDQVHLLECAW
330 340 350 360 370 380
230 240 250 260 270 280
pF1KB4 RELFVLGIAQWAIPVDANTLLAVSGMNGDNTDSQKLNKIISEIQALQEVVARFRQLRLDA
:....:.. : . :: . .. : .... .. .. .. : . .:::.. :..
CCDS52 LEILMIGLV-WRSMEHPGKLLFAPNLLLDRNQGKCVEGMVEIFDMLLATSSRFRMMNLQG
390 400 410 420 430 440
290 300 310 320 330
pF1KB4 TEFACLKCIVTFKA-VPTHSGSELRSFRNAAAIAALQDEAQLTLNSYIHTRYPT---QPC
::.::: :. ... : : .: :.:... : . :. :: . : :
CCDS52 EEFVCLKSIILLNSGVYTFLSSTLKSLEEKDHIHRVLDKITDTLIHLMAKAGLTLQQQHQ
450 460 470 480 490 500
340 350 360 370 380
pF1KB4 RFGKLLLLLPALRSISPSTIEEVFFKKTIGNVPITRLLSDMYKSSDI
:...:::.: .: .: . .:... : . ::. :: .:
CCDS52 RLAQLLLILSHIRHMSNKGMEHLYSMKCKNVVPLYDLLLEMLDAHRLHAPTSRGGASVEE
510 520 530 540 550 560
CCDS52 TDQSHLATAGSTSSHSLQKYYITGEAEGFPATV
570 580 590
385 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 22:57:09 2016 done: Fri Nov 4 22:57:09 2016
Total Scan time: 2.380 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]