Result of FASTA (ccds) for
pF1KB4178
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4178, 345 aa
1>>>pF1KB4178 345 - 345 aa - 345 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.9481+/-0.000792; mu= 9.4667+/- 0.048
mean_var=110.2949+/-21.276, 0's: 0 Z-trim(111.3): 20 B-trim: 34 in 1/49
Lambda= 0.122123
statistics sampled from 12245 (12258) to 12245 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.729), E-opt: 0.2 (0.377), width: 16
Scan time: 3.090
The best scores are: opt bits E(32554)
CCDS31880.1 TMPO gene_id:7112|Hs108|chr12 ( 345) 2234 403.9 1e-112
CCDS76589.1 TMPO gene_id:7112|Hs108|chr12 ( 414) 1455 266.7 2.5e-71
CCDS31879.1 TMPO gene_id:7112|Hs108|chr12 ( 454) 1427 261.8 8.1e-70
CCDS9064.1 TMPO gene_id:7112|Hs108|chr12 ( 694) 1226 226.4 5.3e-59
>>CCDS31880.1 TMPO gene_id:7112|Hs108|chr12 (345 aa)
initn: 2234 init1: 2234 opt: 2234 Z-score: 2137.1 bits: 403.9 E(32554): 1e-112
Smith-Waterman score: 2234; 100.0% identity (100.0% similar) in 345 aa overlap (1-345:1-345)
10 20 30 40 50 60
pF1KB4 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 DRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQVGEKTEERRVERDILKEMF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 DRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQVGEKTEERRVERDILKEMF
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 PYEASTPTGISASCRRPIKGAAGRPLELSDFRMEESFSSKYVPKYVPLADVKSEKTKKGR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PYEASTPTGISASCRRPIKGAAGRPLELSDFRMEESFSSKYVPKYVPLADVKSEKTKKGR
250 260 270 280 290 300
310 320 330 340
pF1KB4 SIPVWIKILLFVVVAVFLFLVYQAMETNQVNPFSNFLHVDPRKSN
:::::::::::::::::::::::::::::::::::::::::::::
CCDS31 SIPVWIKILLFVVVAVFLFLVYQAMETNQVNPFSNFLHVDPRKSN
310 320 330 340
>>CCDS76589.1 TMPO gene_id:7112|Hs108|chr12 (414 aa)
initn: 1454 init1: 1430 opt: 1455 Z-score: 1394.2 bits: 266.7 E(32554): 2.5e-71
Smith-Waterman score: 1847; 81.7% identity (81.7% similar) in 377 aa overlap (1-308:1-377)
10 20 30 40 50 60
pF1KB4 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS
130 140 150 160 170 180
190 200 210 220
pF1KB4 DRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQV------------------
::::::::::::::::::::::::::::::::::::::::::
CCDS76 DRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQVETSEHFRIDGPVISESTP
190 200 210 220 230 240
230
pF1KB4 ---------------------------------------------------GEKTEERRV
:::::::::
CCDS76 IAETIMASSNESLVVNRVTGNFKHASPILPITEFSDIPRRAPKKPLTRAEVGEKTEERRV
250 260 270 280 290 300
240 250 260 270 280 290
pF1KB4 ERDILKEMFPYEASTPTGISASCRRPIKGAAGRPLELSDFRMEESFSSKYVPKYVPLADV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS76 ERDILKEMFPYEASTPTGISASCRRPIKGAAGRPLELSDFRMEESFSSKYVPKYVPLADV
310 320 330 340 350 360
300 310 320 330 340
pF1KB4 KSEKTKKGRSIPVWIKILLFVVVAVFLFLVYQAMETNQVNPFSNFLHVDPRKSN
:::::::::::::::::
CCDS76 KSEKTKKGRSIPVWIKILLFVVVAVFLFLVYQAMETNQVNPFSNFLHVDPRKSN
370 380 390 400 410
>>CCDS31879.1 TMPO gene_id:7112|Hs108|chr12 (454 aa)
initn: 1449 init1: 1425 opt: 1427 Z-score: 1366.9 bits: 261.8 E(32554): 8.1e-70
Smith-Waterman score: 1505; 71.1% identity (71.1% similar) in 377 aa overlap (1-268:1-377)
10 20 30 40 50 60
pF1KB4 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS
130 140 150 160 170 180
190 200 210 220
pF1KB4 DRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQ-------------------
:::::::::::::::::::::::::::::::::::::::::
CCDS31 DRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQSYSQAGITETEWTSGSSKG
190 200 210 220 230 240
pF1KB4 ------------------------------------------------------------
CCDS31 GPLQALTRESTRGSRRTPRKRVETSEHFRIDGPVISESTPIAETIMASSNESLVVNRVTG
250 260 270 280 290 300
230 240 250
pF1KB4 ------------------------------VGEKTEERRVERDILKEMFPYEASTPTGIS
::::::::::::::::::::::::::::::
CCDS31 NFKHASPILPITEFSDIPRRAPKKPLTRAEVGEKTEERRVERDILKEMFPYEASTPTGIS
310 320 330 340 350 360
260 270 280 290 300 310
pF1KB4 ASCRRPIKGAAGRPLELSDFRMEESFSSKYVPKYVPLADVKSEKTKKGRSIPVWIKILLF
:::::::::::::::::
CCDS31 ASCRRPIKGAAGRPLELSDFRMEESFSSKYVPKYVPLADVKSEKTKKGRSIPVWIKILLF
370 380 390 400 410 420
>--
initn: 501 init1: 501 opt: 501 Z-score: 485.2 bits: 98.6 E(32554): 1.1e-20
Smith-Waterman score: 501; 100.0% identity (100.0% similar) in 77 aa overlap (269-345:378-454)
240 250 260 270 280 290
pF1KB4 MFPYEASTPTGISASCRRPIKGAAGRPLELSDFRMEESFSSKYVPKYVPLADVKSEKTKK
::::::::::::::::::::::::::::::
CCDS31 MFPYEASTPTGISASCRRPIKGAAGRPLELSDFRMEESFSSKYVPKYVPLADVKSEKTKK
350 360 370 380 390 400
300 310 320 330 340
pF1KB4 GRSIPVWIKILLFVVVAVFLFLVYQAMETNQVNPFSNFLHVDPRKSN
:::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 GRSIPVWIKILLFVVVAVFLFLVYQAMETNQVNPFSNFLHVDPRKSN
410 420 430 440 450
>>CCDS9064.1 TMPO gene_id:7112|Hs108|chr12 (694 aa)
initn: 1252 init1: 1226 opt: 1226 Z-score: 1172.7 bits: 226.4 E(32554): 5.3e-59
Smith-Waterman score: 1226; 97.9% identity (98.5% similar) in 195 aa overlap (1-195:1-195)
10 20 30 40 50 60
pF1KB4 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MPEFLEDPSVLTKDKLKSELVANNVTLPAGEQRKDVYVQLYLQHLTARNRPPLPAGTNSK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 GPPDFSSDEEREPTPVLGSGAAAAGRSRAAVGRKATKKTDKPRQEDKDDLDVTELTNEDL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 LDQLVKYGVNPGPIVGTTRKLYEKKLLKLREQGTESRSSTPLPTISSSAENTRQNGSNDS
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 DRYSDNEEDSKIELKLEKREPLKGRAKTPVTLKQRRVEHNQVGEKTEERRVERDILKEMF
:::::::: .: : :
CCDS90 DRYSDNEEGKKKEHKKVKSTRDIVPFSELGTTPSGGGFFQGISFPEISTRPPLGSTELQA
190 200 210 220 230 240
345 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 05:41:48 2016 done: Sat Nov 5 05:41:49 2016
Total Scan time: 3.090 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]