Result of FASTA (ccds) for
pF1KB4172
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4172, 359 aa
1>>>pF1KB4172 359 - 359 aa - 359 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.9747+/-0.00108; mu= 14.0627+/- 0.065
mean_var=139.6773+/-29.993, 0's: 0 Z-trim(106.3): 175 B-trim: 357 in 1/52
Lambda= 0.108520
statistics sampled from 8673 (8897) to 8673 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.652), E-opt: 0.2 (0.273), width: 16
Scan time: 2.660
The best scores are: opt bits E(32554)
CCDS6515.1 ELAVL2 gene_id:1993|Hs108|chr9 ( 359) 2363 381.9 4.5e-106
CCDS44138.1 ELAVL4 gene_id:1996|Hs108|chr1 ( 366) 2157 349.7 2.3e-96
CCDS44140.1 ELAVL4 gene_id:1996|Hs108|chr1 ( 366) 2157 349.7 2.3e-96
CCDS53315.1 ELAVL4 gene_id:1996|Hs108|chr1 ( 369) 2157 349.7 2.3e-96
CCDS72788.1 ELAVL4 gene_id:1996|Hs108|chr1 ( 371) 2157 349.7 2.3e-96
CCDS44139.2 ELAVL4 gene_id:1996|Hs108|chr1 ( 402) 2157 349.7 2.5e-96
CCDS45978.1 ELAVL3 gene_id:1995|Hs108|chr19 ( 360) 1924 313.2 2.2e-85
CCDS32912.1 ELAVL3 gene_id:1995|Hs108|chr19 ( 367) 1900 309.5 3e-84
CCDS55298.1 ELAVL2 gene_id:1993|Hs108|chr9 ( 346) 1545 253.8 1.6e-67
CCDS553.1 ELAVL4 gene_id:1996|Hs108|chr1 ( 380) 1470 242.1 5.7e-64
CCDS81321.1 ELAVL4 gene_id:1996|Hs108|chr1 ( 385) 1470 242.2 5.7e-64
CCDS12193.1 ELAVL1 gene_id:1994|Hs108|chr19 ( 326) 1023 172.1 6e-43
CCDS2213.1 RBMS1 gene_id:5937|Hs108|chr2 ( 406) 417 77.3 2.5e-14
CCDS8923.1 RBMS2 gene_id:5939|Hs108|chr12 ( 407) 392 73.4 3.8e-13
>>CCDS6515.1 ELAVL2 gene_id:1993|Hs108|chr9 (359 aa)
initn: 2363 init1: 2363 opt: 2363 Z-score: 2017.9 bits: 381.9 E(32554): 4.5e-106
Smith-Waterman score: 2363; 100.0% identity (100.0% similar) in 359 aa overlap (1-359:1-359)
10 20 30 40 50 60
pF1KB4 METQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 METQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 EAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 EAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 NLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 NLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFG
250 260 270 280 290 300
310 320 330 340 350
pF1KB4 AVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS65 AVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA
310 320 330 340 350
>>CCDS44138.1 ELAVL4 gene_id:1996|Hs108|chr1 (366 aa)
initn: 2504 init1: 2090 opt: 2157 Z-score: 1843.5 bits: 349.7 E(32554): 2.3e-96
Smith-Waterman score: 2157; 90.0% identity (97.5% similar) in 360 aa overlap (1-359:8-366)
10 20 30 40 50
pF1KB4 METQLSNGPTCNNTANGPTTINNNCSSPVDSG-NTEDSKTNLIVNYLPQNMTQ
:: :.::::: .::.:::.. : :: ::...: .:.:::::::::::::::::
CCDS44 MEQIISTMEPQVSNGPT-SNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQ
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV
::..::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB4 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS44 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB4 FDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQ
::::::::::::::::::: :::::::::::::::::..::.:::::::::::::::: .
CCDS44 FDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHH
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB4 QAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESIL
::::::::::::::::::::::.::::::::.:.::::: :::::::::::.::.:::.:
CCDS44 QAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVL
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB4 WQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK
::.:::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 WQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK
300 310 320 330 340 350
pF1KB4 TNKTHKA
:::.::.
CCDS44 TNKAHKS
360
>>CCDS44140.1 ELAVL4 gene_id:1996|Hs108|chr1 (366 aa)
initn: 2504 init1: 2090 opt: 2157 Z-score: 1843.5 bits: 349.7 E(32554): 2.3e-96
Smith-Waterman score: 2157; 90.0% identity (97.5% similar) in 360 aa overlap (1-359:8-366)
10 20 30 40 50
pF1KB4 METQLSNGPTCNNTANGPTTINNNCSSPVDSG-NTEDSKTNLIVNYLPQNMTQ
:: :.::::: .::.:::.. : :: ::...: .:.:::::::::::::::::
CCDS44 MVMIISTMEPQVSNGPT-SNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQ
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV
::..::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB4 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS44 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB4 FDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQ
::::::::::::::::::: :::::::::::::::::..::.:::::::::::::::: .
CCDS44 FDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHH
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB4 QAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESIL
::::::::::::::::::::::.::::::::.:.::::: :::::::::::.::.:::.:
CCDS44 QAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDESVL
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB4 WQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK
::.:::::::.:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 WQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFK
300 310 320 330 340 350
pF1KB4 TNKTHKA
:::.::.
CCDS44 TNKAHKS
360
>>CCDS53315.1 ELAVL4 gene_id:1996|Hs108|chr1 (369 aa)
initn: 2504 init1: 2090 opt: 2157 Z-score: 1843.4 bits: 349.7 E(32554): 2.3e-96
Smith-Waterman score: 2157; 90.0% identity (97.5% similar) in 360 aa overlap (1-359:11-369)
10 20 30 40
pF1KB4 METQLSNGPTCNNTANGPTTINNNCSSPVDSG-NTEDSKTNLIVNYLPQN
:: :.::::: .::.:::.. : :: ::...: .:.::::::::::::::
CCDS53 MRLKNQIISTMEPQVSNGPT-SNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQN
10 20 30 40 50
50 60 70 80 90 100
pF1KB4 MTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT
:::::..:::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 MTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKT
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB4 IKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVG
::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::::
CCDS53 IKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVG
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB4 FIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGP
:::::::::::::::::::::: :::::::::::::::::..::.:::::::::::::::
CCDS53 FIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGP
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB4 LAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADE
: .::::::::::::::::::::::.::::::::.:.::::: :::::::::::.::.::
CCDS53 LHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDSDE
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB4 SILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV
:.:::.:::::::.::::::::::::::::::::::::::::::::::::::::::::::
CCDS53 SVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV
300 310 320 330 340 350
350
pF1KB4 SFKTNKTHKA
::::::.::.
CCDS53 SFKTNKAHKS
360
>>CCDS72788.1 ELAVL4 gene_id:1996|Hs108|chr1 (371 aa)
initn: 2504 init1: 2090 opt: 2157 Z-score: 1843.4 bits: 349.7 E(32554): 2.3e-96
Smith-Waterman score: 2157; 90.0% identity (97.5% similar) in 360 aa overlap (1-359:13-371)
10 20 30 40
pF1KB4 METQLSNGPTCNNTANGPTTINNNCSSPVDSG-NTEDSKTNLIVNYLP
:: :.::::: .::.:::.. : :: ::...: .:.::::::::::::
CCDS72 MEWNGLKMIISTMEPQVSNGPT-SNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLP
10 20 30 40 50
50 60 70 80 90 100
pF1KB4 QNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT
:::::::..:::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS72 QNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQT
60 70 80 90 100 110
110 120 130 140 150 160
pF1KB4 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::.:::
CCDS72 KTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRG
120 130 140 150 160 170
170 180 190 200 210 220
pF1KB4 VGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYP
:::::::::::::::::::::::: :::::::::::::::::..::.:::::::::::::
CCDS72 VGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYP
180 190 200 210 220 230
230 240 250 260 270 280
pF1KB4 GPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDA
::: .::::::::::::::::::::::.::::::::.:.::::: :::::::::::.::.
CCDS72 GPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIPGHTGTGWCIFVYNLSPDS
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB4 DESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL
:::.:::.:::::::.::::::::::::::::::::::::::::::::::::::::::::
CCDS72 DESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVL
300 310 320 330 340 350
350
pF1KB4 QVSFKTNKTHKA
::::::::.::.
CCDS72 QVSFKTNKAHKS
360 370
>>CCDS44139.2 ELAVL4 gene_id:1996|Hs108|chr1 (402 aa)
initn: 2504 init1: 2090 opt: 2157 Z-score: 1843.0 bits: 349.7 E(32554): 2.5e-96
Smith-Waterman score: 2157; 90.0% identity (97.5% similar) in 360 aa overlap (1-359:44-402)
10 20 30
pF1KB4 METQLSNGPTCNNTANGPTTINNNCSSPVD
:: :.::::: .::.:::.. : :: ::..
CCDS44 GKGLTDMRLLLLREIVINESRNCSFMIISTMEPQVSNGPT-SNTSNGPSSNNRNCPSPMQ
20 30 40 50 60 70
40 50 60 70 80
pF1KB4 SG-NTEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID
.: .:.:::::::::::::::::::..:::::::::::::::::::::::::::::::::
CCDS44 TGATTDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYID
80 90 100 110 120 130
90 100 110 120 130 140
pF1KB4 PKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYG
140 150 160 170 180 190
150 160 170 180 190 200
pF1KB4 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQK
::::::::::::::.::::::::::::::::::::::::::: :::::::::::::::::
CCDS44 RIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQK
200 210 220 230 240 250
210 220 230 240 250 260
pF1KB4 TNQAILSQLYQSPNRRYPGPLAQQAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIP
..::.:::::::::::::::: .::::::::::::::::::::::.::::::::.:.:::
CCDS44 SSQALLSQLYQSPNRRYPGPLHHQAQRFRLDNLLNMAYGVKRFSPITIDGMTSLVGMNIP
260 270 280 290 300 310
270 280 290 300 310 320
pF1KB4 GHPGTGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDE
:: :::::::::::.::.:::.:::.:::::::.::::::::::::::::::::::::::
CCDS44 GHTGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDE
320 330 340 350 360 370
330 340 350
pF1KB4 AAMAIASLNGYRLGDRVLQVSFKTNKTHKA
::::::::::::::::::::::::::.::.
CCDS44 AAMAIASLNGYRLGDRVLQVSFKTNKAHKS
380 390 400
>>CCDS45978.1 ELAVL3 gene_id:1995|Hs108|chr19 (360 aa)
initn: 2084 init1: 1344 opt: 1924 Z-score: 1646.4 bits: 313.2 E(32554): 2.2e-85
Smith-Waterman score: 1924; 81.7% identity (92.2% similar) in 360 aa overlap (1-359:9-360)
10 20 30 40 50
pF1KB4 METQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQ
::.:...::. ::: .: : :.:::::::::::::::::
CCDS45 MVTQILGAMESQVGGGPAGPALPNGPLLGTN--------GATDDSKTNLIVNYLPQNMTQ
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV
.:.::::::::.::::::::::::::::::::::: ::.::.:::::::::.::::::::
CCDS45 DEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB4 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR
::::::::::::::::::::::::.:::.::::::::::::::::::::::.::::::::
CCDS45 SYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB4 FDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQ
::::::::::::::::::: ::.:::::::::::::::.::.:..:::: ::: ::: .
CCDS45 FDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHH
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB4 QAQRFRLDNLLNMAYGVKRFSPMTIDGMTSLAGINIPGHP-GTGWCIFVYNLAPDADESI
:.::::::::::::::::::::..::::..:::... : :.:::::::::.:.::::.
CCDS45 QTQRFRLDNLLNMAYGVKRFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLSPEADESV
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB4 LWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSF
:::.::::::::::::::::.:::::::::::::::::::::::::::::::.:::::::
CCDS45 LWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGERVLQVSF
300 310 320 330 340 350
pF1KB4 KTNKTHKA
::.: :::
CCDS45 KTSKQHKA
360
>>CCDS32912.1 ELAVL3 gene_id:1995|Hs108|chr19 (367 aa)
initn: 1928 init1: 1266 opt: 1900 Z-score: 1626.0 bits: 309.5 E(32554): 3e-84
Smith-Waterman score: 1900; 80.1% identity (90.5% similar) in 367 aa overlap (1-359:9-367)
10 20 30 40 50
pF1KB4 METQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQ
::.:...::. ::: .: : :.:::::::::::::::::
CCDS32 MVTQILGAMESQVGGGPAGPALPNGPLLGTN--------GATDDSKTNLIVNYLPQNMTQ
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV
.:.::::::::.::::::::::::::::::::::: ::.::.:::::::::.::::::::
CCDS32 DEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB4 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR
::::::::::::::::::::::::.:::.::::::::::::::::::::::.::::::::
CCDS32 SYARPSSASIRDANLYVSGLPKTMSQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB4 FDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQ
::::::::::::::::::: ::.:::::::::::::::.::.:..:::: ::: ::: .
CCDS32 FDKRIEAEEAIKGLNGQKPLGAAEPITVKFANNPSQKTGQALLTHLYQSSARRYAGPLHH
180 190 200 210 220 230
240 250 260 270 280
pF1KB4 QAQRFRLDNLLNMAYGVK-------RFSPMTIDGMTSLAGINIPGHP-GTGWCIFVYNLA
:.:::::::::::::::: ::::..::::..:::... : :.:::::::::.
CCDS32 QTQRFRLDNLLNMAYGVKSPLSLIARFSPIAIDGMSGLAGVGLSGGAAGAGWCIFVYNLS
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB4 PDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD
:.::::.:::.::::::::::::::::.:::::::::::::::::::::::::::::::.
CCDS32 PEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGE
300 310 320 330 340 350
350
pF1KB4 RVLQVSFKTNKTHKA
:::::::::.: :::
CCDS32 RVLQVSFKTSKQHKA
360
>>CCDS55298.1 ELAVL2 gene_id:1993|Hs108|chr9 (346 aa)
initn: 1705 init1: 1543 opt: 1545 Z-score: 1325.9 bits: 253.8 E(32554): 1.6e-67
Smith-Waterman score: 2244; 96.4% identity (96.4% similar) in 359 aa overlap (1-359:1-346)
10 20 30 40 50 60
pF1KB4 METQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 METQLSNGPTCNNTANGPTTINNNCSSPVDSGNTEDSKTNLIVNYLPQNMTQEELKSLFG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 SIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 EAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFRLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQQAQRFR--
190 200 210 220 230
250 260 270 280 290 300
pF1KB4 NLLNMAYGVKRFSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFG
:::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 -----------FSPMTIDGMTSLAGINIPGHPGTGWCIFVYNLAPDADESILWQMFGPFG
240 250 260 270 280
310 320 330 340 350
pF1KB4 AVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 AVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQVSFKTNKTHKA
290 300 310 320 330 340
>>CCDS553.1 ELAVL4 gene_id:1996|Hs108|chr1 (380 aa)
initn: 2366 init1: 1403 opt: 1470 Z-score: 1262.0 bits: 242.1 E(32554): 5.7e-64
Smith-Waterman score: 2119; 86.6% identity (93.9% similar) in 374 aa overlap (1-359:8-380)
10 20 30 40 50
pF1KB4 METQLSNGPTCNNTANGPTTINNNCSSPVDSG-NTEDSKTNLIVNYLPQNMTQ
:: :.::::: .::.:::.. : :: ::...: .:.:::::::::::::::::
CCDS55 MVMIISTMEPQVSNGPT-SNTSNGPSSNNRNCPSPMQTGATTDDSKTNLIVNYLPQNMTQ
10 20 30 40 50
60 70 80 90 100 110
pF1KB4 EELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV
::..::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 EEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB4 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIR
:::::::::::::::::::::::::::::::::::::::::::::::::::.::::::::
CCDS55 SYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB4 FDKRIEAEEAIKGLNGQKPPGATEPITVKFANNPSQKTNQAILSQLYQSPNRRYPGPLAQ
::::::::::::::::::: :::::::::::::::::..::.:::::::::::::::: .
CCDS55 FDKRIEAEEAIKGLNGQKPSGATEPITVKFANNPSQKSSQALLSQLYQSPNRRYPGPLHH
180 190 200 210 220 230
240 250 260 270
pF1KB4 QAQRFRLDNLLNMAYGVKR--------------FSPMTIDGMTSLAGINIPGHPGTGWCI
::::::::::::::::::: :::.::::::::.:.::::: ::::::
CCDS55 QAQRFRLDNLLNMAYGVKRLMSGPVPPSACPPRFSPITIDGMTSLVGMNIPGHTGTGWCI
240 250 260 270 280 290
280 290 300 310 320 330
pF1KB4 FVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN
:::::.::.:::.:::.:::::::.:::::::::::::::::::::::::::::::::::
CCDS55 FVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASLN
300 310 320 330 340 350
340 350
pF1KB4 GYRLGDRVLQVSFKTNKTHKA
:::::::::::::::::.::.
CCDS55 GYRLGDRVLQVSFKTNKAHKS
360 370 380
359 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 20:46:50 2016 done: Fri Nov 4 20:46:50 2016
Total Scan time: 2.660 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]