FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4156, 142 aa
  1>>>pF1KB4156 142 - 142 aa - 142 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.1270+/-0.000622; mu= 13.2250+/- 0.038
 mean_var=71.0880+/-14.124, 0's: 0 Z-trim(111.7): 4  B-trim: 0 in 0/49
 Lambda= 0.152116
 statistics sampled from 12604 (12607) to 12604 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.769), E-opt: 0.2 (0.387), width:  16
 Scan time:  1.550

The best scores are:                                      opt bits E(32554)
CCDS9045.1 MRPL42 gene_id:28977|Hs108|chr12        ( 142) 1015 230.8 2.2e-61


>>CCDS9045.1 MRPL42 gene_id:28977|Hs108|chr12             (142 aa)
 initn: 1015 init1: 1015 opt: 1015  Z-score: 1215.4  bits: 230.8 E(32554): 2.2e-61
Smith-Waterman score: 1015; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)

               10        20        30        40        50        60
pF1KB4 MAVAAVKWVMSKRTILKHLFPVQNGALYCVCHKSTYSPLPDDYNCNVELALTSDGRTIVC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 MAVAAVKWVMSKRTILKHLFPVQNGALYCVCHKSTYSPLPDDYNCNVELALTSDGRTIVC
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 YHPSVDIPYEHTKPIPRPDPVHNNEETHDQVLKTRLEEKVEHLEEGPMIEQLSKMFFTTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS90 YHPSVDIPYEHTKPIPRPDPVHNNEETHDQVLKTRLEEKVEHLEEGPMIEQLSKMFFTTK
               70        80        90       100       110       120

              130       140  
pF1KB4 HRWYPHGRYHRCRKNLNPPKDR
       ::::::::::::::::::::::
CCDS90 HRWYPHGRYHRCRKNLNPPKDR
              130       140  




142 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:40:03 2016 done: Sat Nov  5 05:40:04 2016
 Total Scan time:  1.550 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]