FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4126, 433 aa
  1>>>pF1KB4126 433 - 433 aa - 433 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6347+/-0.00119; mu= 15.9945+/- 0.070
 mean_var=100.7416+/-26.354, 0's: 0 Z-trim(102.1): 148  B-trim: 827 in 2/48
 Lambda= 0.127782
 statistics sampled from 6587 (6784) to 6587 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.551), E-opt: 0.2 (0.208), width:  16
 Scan time:  2.800

The best scores are:                                      opt bits E(32554)
CCDS5744.1 GPR22 gene_id:2845|Hs108|chr7           ( 433) 2782 524.2 9.5e-149
CCDS3438.1 CCKAR gene_id:886|Hs108|chr4            ( 428)  339 73.8 3.6e-13


>>CCDS5744.1 GPR22 gene_id:2845|Hs108|chr7                (433 aa)
 initn: 2782 init1: 2782 opt: 2782  Z-score: 2784.0  bits: 524.2 E(32554): 9.5e-149
Smith-Waterman score: 2782; 100.0% identity (100.0% similar) in 433 aa overlap (1-433:1-433)

               10        20        30        40        50        60
pF1KB4 MCFSPILEINMQSESNITVRDDIDDINTNMYQPLSYPLSFQVSLTGFLMLEIVLGLGSNL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 MCFSPILEINMQSESNITVRDDIDDINTNMYQPLSYPLSFQVSLTGFLMLEIVLGLGSNL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 TVLVLYCMKSNLINSVSNIITMNLHVLDVIICVGCIPLTIVILLLSLESNTALICCFHEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 TVLVLYCMKSNLINSVSNIITMNLHVLDVIICVGCIPLTIVILLLSLESNTALICCFHEA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 CVSFASVSTAINVFAITLDRYDISVKPANRILTMGRAVMLMISIWIFSFFSFLIPFIEVN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 CVSFASVSTAINVFAITLDRYDISVKPANRILTMGRAVMLMISIWIFSFFSFLIPFIEVN
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 FFSLQSGNTWENKTLLCVSTNEYYTELGMYYHLLVQIPIFFFTVVVMLITYTKILQALNI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 FFSLQSGNTWENKTLLCVSTNEYYTELGMYYHLLVQIPIFFFTVVVMLITYTKILQALNI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 RIGTRFSTGQKKKARKKKTISLTTQHEATDMSQSSGGRNVVFGVRTSVSVIIALRRAVKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 RIGTRFSTGQKKKARKKKTISLTTQHEATDMSQSSGGRNVVFGVRTSVSVIIALRRAVKR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 HRERRERQKRVFRMSLLIISTFLLCWTPISVLNTTILCLGPSDLLVKLRLCFLVMAYGTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 HRERRERQKRVFRMSLLIISTFLLCWTPISVLNTTILCLGPSDLLVKLRLCFLVMAYGTT
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 IFHPLLYAFTRQKFQKVLKSKMKKRVVSIVEADPLPNNAVIHNSWIDPKRNKKITFEDSE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS57 IFHPLLYAFTRQKFQKVLKSKMKKRVVSIVEADPLPNNAVIHNSWIDPKRNKKITFEDSE
              370       380       390       400       410       420

              430   
pF1KB4 IREKCLVPQVVTD
       :::::::::::::
CCDS57 IREKCLVPQVVTD
              430   

>>CCDS3438.1 CCKAR gene_id:886|Hs108|chr4                 (428 aa)
 initn: 168 init1:  96 opt: 339  Z-score: 350.0  bits: 73.8 E(32554): 3.6e-13
Smith-Waterman score: 339; 23.9% identity (59.5% similar) in 348 aa overlap (41-375:44-378)

               20        30        40        50        60        70
pF1KB4 MQSESNITVRDDIDDINTNMYQPLSYPLSFQVSLTGFLMLEIVLGLGSNLTVLVLYCMKS
                                     :. : ....:  :::  ..:.. ::  ...
CCDS34 ITPPCELGLENETLFCLDQPRPSKEWQPAVQILLYSLIFLLSVLG--NTLVITVL--IRN
            20        30        40        50          60           

               80        90       100       110       120       130
pF1KB4 NLINSVSNIITMNLHVLDVIICVGCIPLTIVILLLSLESNTALICCFHEACVSFASVSTA
       . . .:.::. ..: : :...:. :.:....  ::.     . .:   .. . : ..:..
CCDS34 KRMRTVTNIFLLSLAVSDLMLCLFCMPFNLIPNLLKDFIFGSAVC---KTTTYFMGTSVS
      70        80        90       100       110          120      

                 140        150        160       170        180    
pF1KB4 INVF---AITLDRYDISVKP-ANRIL-TMGRAVMLMISIWIFSFFSFLIPF-IEVNFFSL
       ...:   ::.:.::    ::  .:.  : ..:. .. . : .:: ... :. :  :.  .
CCDS34 VSTFNLVAISLERYGAICKPLQSRVWQTKSHALKVIAATWCLSF-TIMTPYPIYSNLVPF
        130       140       150       160       170        180     

          190       200       210       220       230       240    
pF1KB4 QSGNTWENKTLLCVSTNEYYTELGMYYHLLVQIPIFFFTVVVMLITYTKILQALNIRIGT
        ..:.   .    .  :.    . . .: .. . .:..  .::...:  :  .:..  : 
CCDS34 TKNNNQTANMCRFLLPNDV---MQQSWHTFLLLILFLIPGIVMMVAYGLI--SLELYQGI
         190       200          210       220       230         240

          250       260        270          280       290       300
pF1KB4 RFSTGQKKKARKKKTISLTT-QHEATD---MSQSSGGRNVVFGVRTSVSVIIALRRAVKR
       .: ..:::.:...:  . .. ..: .:   ....   :.. .   .. :   : :   . 
CCDS34 KFEASQKKSAKERKPSTTSSGKYEDSDGCYLQKTRPPRKLELRQLSTGSSSRANRIRSNS
              250       260       270       280       290       300

              310       320       330         340       350        
pF1KB4 HRERRERQKRVFRMSLLIISTFLLCWTPISVLNT--TILCLGPSDLLVKLRLCF-LVMAY
              .:::.:: ..:.  :.::: ::   :.  .    .    :    . : :...:
CCDS34 SAANLMAKKRVIRMLIVIVVLFFLCWMPIFSANAWRAYDTASAERRLSGTPISFILLLSY
              310       320       330       340       350       360

       360       370       380       390       400       410       
pF1KB4 GTTIFHPLLYAFTRQKFQKVLKSKMKKRVVSIVEADPLPNNAVIHNSWIDPKRNKKITFE
        ..  .:..: :  ..:.                                          
CCDS34 TSSCVNPIIYCFMNKRFRLGFMATFPCCPNPGPPGARGEVGEEEEGGTTGASLSRFSYSH
              370       380       390       400       410       420




433 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 14:27:57 2016 done: Thu Nov  3 14:27:57 2016
 Total Scan time:  2.800 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]