FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4094, 615 aa
  1>>>pF1KB4094 615 - 615 aa - 615 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.1396+/-0.000935; mu= 3.7748+/- 0.057
 mean_var=237.6456+/-47.352, 0's: 0 Z-trim(113.9): 10  B-trim: 0 in 0/53
 Lambda= 0.083197
 statistics sampled from 14498 (14505) to 14498 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.446), width:  16
 Scan time:  3.190

The best scores are:                                      opt bits E(32554)
CCDS8083.1 MEN1 gene_id:4221|Hs108|chr11           ( 615) 4127 508.4 1.1e-143
CCDS31600.1 MEN1 gene_id:4221|Hs108|chr11          ( 610) 4064 500.8 2.1e-141


>>CCDS8083.1 MEN1 gene_id:4221|Hs108|chr11                (615 aa)
 initn: 4127 init1: 4127 opt: 4127  Z-score: 2692.9  bits: 508.4 E(32554): 1.1e-143
Smith-Waterman score: 4127; 99.8% identity (100.0% similar) in 615 aa overlap (1-615:1-615)

               10        20        30        40        50        60
pF1KB4 MGLKAAQKTLFPLRSIDDVVRLFAAELGREEPDLVLLSLVLGFVEHFLAVNRVIPTNVPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 MGLKAAQKTLFPLRSIDDVVRLFAAELGREEPDLVLLSLVLGFVEHFLAVNRVIPTNVPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 LTFQPSPAPDPPGGLTYFPVADLSIIAALYARFTAQIRGAVDLSLYPREGGVSSRELVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 LTFQPSPAPDPPGGLTYFPVADLSIIAALYARFTAQIRGAVDLSLYPREGGVSSRELVKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 VSDVIWNSLSRSYFKDRAHIQSLFSFITGWSPVGTKLDSSGVAFAVVGACQALGLRDVHL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 VSDVIWNSLSRSYFKDRAHIQSLFSFITGWSPVGTKLDSSGVAFAVVGACQALGLRDVHL
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 ALSEDHAWVVFGPNGEQTAEVTWHGKGNEDRRGQTVNAGVAERSWLYLKGSYMRCDRKME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 ALSEDHAWVVFGPNGEQTAEVTWHGKGNEDRRGQTVNAGVAERSWLYLKGSYMRCDRKME
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 VAFMVCAINPSIDLHTDSLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 VAFMVCAINPSIDLHTDSLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 PDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 PDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 EDEEIYKEFFEVANDVIPNLLKEAASLLEAGEERPGEQSQGTQSQGSALQDPECFAHLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 EDEEIYKEFFEVANDVIPNLLKEAASLLEAGEERPGEQSQGTQSQGSALQDPECFAHLLR
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 FYDGICKWEEGSPTPVLHVGWATFLVQSLGRFEGQVRQKVRIVSREAEAAEAEEPWGEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 FYDGICKWEEGSPTPVLHVGWATFLVQSLGRFEGQVRQKVRIVSREAEAAEAEEPWGEEA
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB4 REGRRRGPRRESKPEEPPPPKKPALDKGLGTGQGAVSGPPRKPPGTVAGTARGPEGGSTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 REGRRRGPRRESKPEEPPPPKKPALDKGLGTGQGAVSGPPRKPPGTVAGTARGPEGGSTA
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KB4 QVPAPAASPPPEGPVLTFQSEKMKGMKELLVATKINSSAIKLQLTAQSQVQMKKQKVSTP
       :::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS80 QVPAPTASPPPEGPVLTFQSEKMKGMKELLVATKINSSAIKLQLTAQSQVQMKKQKVSTP
              550       560       570       580       590       600

              610     
pF1KB4 SDYTLSFLKRQRKGL
       :::::::::::::::
CCDS80 SDYTLSFLKRQRKGL
              610     

>>CCDS31600.1 MEN1 gene_id:4221|Hs108|chr11               (610 aa)
 initn: 3131 init1: 3131 opt: 4064  Z-score: 2652.1  bits: 500.8 E(32554): 2.1e-141
Smith-Waterman score: 4064; 99.0% identity (99.2% similar) in 615 aa overlap (1-615:1-610)

               10        20        30        40        50        60
pF1KB4 MGLKAAQKTLFPLRSIDDVVRLFAAELGREEPDLVLLSLVLGFVEHFLAVNRVIPTNVPE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 MGLKAAQKTLFPLRSIDDVVRLFAAELGREEPDLVLLSLVLGFVEHFLAVNRVIPTNVPE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 LTFQPSPAPDPPGGLTYFPVADLSIIAALYARFTAQIRGAVDLSLYPREGGVSSRELVKK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 LTFQPSPAPDPPGGLTYFPVADLSIIAALYARFTAQIRGAVDLSLYPREGGVSSRELVKK
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 VSDVIWNSLSRSYFKDRAHIQSLFSFITGWSPVGTKLDSSGVAFAVVGACQALGLRDVHL
       ::::::::::::::::::::::::::::     :::::::::::::::::::::::::::
CCDS31 VSDVIWNSLSRSYFKDRAHIQSLFSFIT-----GTKLDSSGVAFAVVGACQALGLRDVHL
              130       140            150       160       170     

              190       200       210       220       230       240
pF1KB4 ALSEDHAWVVFGPNGEQTAEVTWHGKGNEDRRGQTVNAGVAERSWLYLKGSYMRCDRKME
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 ALSEDHAWVVFGPNGEQTAEVTWHGKGNEDRRGQTVNAGVAERSWLYLKGSYMRCDRKME
         180       190       200       210       220       230     

              250       260       270       280       290       300
pF1KB4 VAFMVCAINPSIDLHTDSLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 VAFMVCAINPSIDLHTDSLELLQLQQKLLWLLYDLGHLERYPMALGNLADLEELEPTPGR
         240       250       260       270       280       290     

              310       320       330       340       350       360
pF1KB4 PDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 PDPLTLYHKGIASAKTYYRDEHIYPYMYLAGYHCRNRNVREALQAWADTATVIQDYNYCR
         300       310       320       330       340       350     

              370       380       390       400       410       420
pF1KB4 EDEEIYKEFFEVANDVIPNLLKEAASLLEAGEERPGEQSQGTQSQGSALQDPECFAHLLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 EDEEIYKEFFEVANDVIPNLLKEAASLLEAGEERPGEQSQGTQSQGSALQDPECFAHLLR
         360       370       380       390       400       410     

              430       440       450       460       470       480
pF1KB4 FYDGICKWEEGSPTPVLHVGWATFLVQSLGRFEGQVRQKVRIVSREAEAAEAEEPWGEEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 FYDGICKWEEGSPTPVLHVGWATFLVQSLGRFEGQVRQKVRIVSREAEAAEAEEPWGEEA
         420       430       440       450       460       470     

              490       500       510       520       530       540
pF1KB4 REGRRRGPRRESKPEEPPPPKKPALDKGLGTGQGAVSGPPRKPPGTVAGTARGPEGGSTA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 REGRRRGPRRESKPEEPPPPKKPALDKGLGTGQGAVSGPPRKPPGTVAGTARGPEGGSTA
         480       490       500       510       520       530     

              550       560       570       580       590       600
pF1KB4 QVPAPAASPPPEGPVLTFQSEKMKGMKELLVATKINSSAIKLQLTAQSQVQMKKQKVSTP
       :::::.::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS31 QVPAPTASPPPEGPVLTFQSEKMKGMKELLVATKINSSAIKLQLTAQSQVQMKKQKVSTP
         540       550       560       570       580       590     

              610     
pF1KB4 SDYTLSFLKRQRKGL
       :::::::::::::::
CCDS31 SDYTLSFLKRQRKGL
         600       610




615 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:51:27 2016 done: Sat Nov  5 00:51:28 2016
 Total Scan time:  3.190 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]