FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4055, 333 aa
  1>>>pF1KB4055 333 - 333 aa - 333 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6422+/-0.000833; mu= 15.0068+/- 0.050
 mean_var=80.1644+/-15.984, 0's: 0 Z-trim(108.5): 29  B-trim: 0 in 0/49
 Lambda= 0.143246
 statistics sampled from 10228 (10245) to 10228 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.689), E-opt: 0.2 (0.315), width:  16
 Scan time:  1.790

The best scores are:                                      opt bits E(32554)
CCDS9507.1 EFNB2 gene_id:1948|Hs108|chr13          ( 333) 2243 472.9 1.6e-133
CCDS11120.1 EFNB3 gene_id:1949|Hs108|chr17         ( 340)  839 182.8 3.5e-46
CCDS14391.1 EFNB1 gene_id:1947|Hs108|chrX          ( 346)  603 134.0 1.7e-31


>>CCDS9507.1 EFNB2 gene_id:1948|Hs108|chr13               (333 aa)
 initn: 2243 init1: 2243 opt: 2243  Z-score: 2510.8  bits: 472.9 E(32554): 1.6e-133
Smith-Waterman score: 2243; 100.0% identity (100.0% similar) in 333 aa overlap (1-333:1-333)

               10        20        30        40        50        60
pF1KB4 MAVRRDSVWKYCWGVLMVLCRTAISKSIVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 MAVRRDSVWKYCWGVLMVLCRTAISKSIVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDI
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 ICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 ICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEFSPN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 LWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASSAGSTRNKDPT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 LWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASSAGSTRNKDPT
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 RRPELEAGTNGRSSTTSPFVKPNPGSSTDGNSAGHSGNNILGSEVALFAGIASGCIIFIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 RRPELEAGTNGRSSTTSPFVKPNPGSSTDGNSAGHSGNNILGSEVALFAGIASGCIIFIV
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 IIITLVVLLLKYRRRHRKHSPQHTTTLSLSTLATPKRSGNNNGSEPSDIIIPLRTADSVF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS95 IIITLVVLLLKYRRRHRKHSPQHTTTLSLSTLATPKRSGNNNGSEPSDIIIPLRTADSVF
              250       260       270       280       290       300

              310       320       330   
pF1KB4 CPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV
       :::::::::::::::::::::::::::::::::
CCDS95 CPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV
              310       320       330   

>>CCDS11120.1 EFNB3 gene_id:1949|Hs108|chr17              (340 aa)
 initn: 811 init1: 393 opt: 839  Z-score: 942.6  bits: 182.8 E(32554): 3.5e-46
Smith-Waterman score: 839; 42.6% identity (67.1% similar) in 331 aa overlap (14-333:14-340)

               10        20        30        40        50        60
pF1KB4 MAVRRDSVWKYCWGVLMVLCRTAISKSIVLEPIYWNSSNSKFLPGQGLVLYPQIGDKLDI
                    :.:..:   .. ... :::.::::.:..:    : ::::::::.::.
CCDS11 MGPPHSGPGGVRVGALLLLGVLGLVSGLSLEPVYWNSANKRFQAEGGYVLYPQIGDRLDL
               10        20        30        40        50        60

                  70        80        90       100       110       
pF1KB4 ICPKV---DSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEF
       .::..     ..  .::.::.:.:   :. ::      . ::.: .:: :..:::::::.
CCDS11 LCPRARPPGPHSSPNYEFYKLYLVGGAQGRRCEAPPAPNLLLTCDRPDLDLRFTIKFQEY
               70        80        90       100       110       120

       120       130       140       150       160       170       
pF1KB4 SPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASSAGSTRNK
       :::::: ::....:::::.::.:. :::.. .:::: ::.::.:..:::  :  :..  .
CCDS11 SPNLWGHEFRSHHDYYIIATSDGTREGLESLQGGVCLTRGMKVLLRVGQ--SPRGGAVPR
              130       140       150       160         170        

       180       190       200        210       220       230      
pF1KB4 DPTRRPELEAGTNGRSSTTSPFVKPNPGSST-DGNSAGHSGNNILGSEVALFAGIASGCI
        :. .  .:    : . .  :  .  ::. : ...: :  :     :  :. :: :.:  
CCDS11 KPVSEMPMERDR-GAAHSLEPGKENLPGDPTSNATSRGAEGPLPPPSMPAV-AGAAGGLA
      180       190        200       210       220        230      

        240       250       260       270       280           290  
pF1KB4 IFIVIIITLVVLLLKYRRRHRKHSPQHTTTLSLSTLATPKRSGNNN-G---SEPSDIIIP
       .... .      .   ::: .    .:    :..  ..   .:... :   .::... : 
CCDS11 LLLLGVAGAGGAMCWRRRRAKPSESRHPGPGSFGRGGSLGLGGGGGMGPREAEPGELGIA
        240       250       260       270       280       290      

               300       310       320       330   
pF1KB4 LR---TADSVFCPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV
       ::   .::  ::::::::::::::::::::. ::::: ::::::
CCDS11 LRGGGAADPPFCPHYEKVSGDYGHPVYIVQDGPPQSPPNIYYKV
        300       310       320       330       340

>>CCDS14391.1 EFNB1 gene_id:1947|Hs108|chrX               (346 aa)
 initn: 1189 init1: 562 opt: 603  Z-score: 678.9  bits: 134.0 E(32554): 1.7e-31
Smith-Waterman score: 1219; 55.7% identity (77.3% similar) in 343 aa overlap (9-333:8-346)

               10           20        30        40        50       
pF1KB4 MAVRRDSVWKYCWGVLMV---LCRTAISKSIVLEPIYWNSSNSKFLPGQGLVLYPQIGDK
               :   : : ::   ::: :   .  :::. :.: : ::: :.:::.::.::::
CCDS14  MARPGQRWLGKWLVAMVVWALCRLATPLAKNLEPVSWSSLNPKFLSGKGLVIYPKIGDK
                10        20        30        40        50         

        60        70        80        90       100       110       
pF1KB4 LDIICPKVDSKTVGQYEYYKVYMVDKDQADRCTIKKENTPLLNCAKPDQDIKFTIKFQEF
       ::::::....     :::::.:.:  .::  :.   . . :..: .:.:.:.::::::::
CCDS14 LDIICPRAEAGR--PYEYYKLYLVRPEQAAACSTVLDPNVLVTCNRPEQEIRFTIKFQEF
      60        70          80        90       100       110       

       120       130       140       150       160       170       
pF1KB4 SPNLWGLEFQKNKDYYIISTSNGSLEGLDNQEGGVCQTRAMKILMKVGQDASSAGSTRNK
       :::  ::::.:..:::: ::::::::::.:.:::::.::.:::.:::::: ...  : ..
CCDS14 SPNYMGLEFKKHHDYYITSTSNGSLEGLENREGGVCRTRTMKIIMKVGQDPNAV--TPEQ
       120       130       140       150       160       170       

       180       190       200                    210         220  
pF1KB4 DPTRRPELEAGTNGRSSTTSPFVKPNPGSSTD-------------GNSAGHSGN--NILG
         : ::  :: .. . .: .:  . . :.:               : :.: ::.  ....
CCDS14 LTTSRPSKEADNTVKMATQAPGSRGSLGDSDGKHETVNQEEKSGPGASGGSSGDPDGFFN
         180       190       200       210       220       230     

            230       240       250       260       270       280  
pF1KB4 SEVALFAGIASGCIIFIVIIITLVVLLLKYRRRHRKHSPQHTTTLSLSTLATPKRSGNNN
       :.:::::....::.::..::: :.::::: :.:::::. :....:::::::.:: .... 
CCDS14 SKVALFAAVGAGCVIFLLIIIFLTVLLLKLRKRHRKHTQQRAAALSLSTLASPKGGSGTA
         240       250       260       270       280       290     

            290       300       310       320       330   
pF1KB4 GSEPSDIIIPLRTADSVFCPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV
       :.:::::::::::... .:::::::::::::::::::::::::::::::::
CCDS14 GTEPSDIIIPLRTTENNYCPHYEKVSGDYGHPVYIVQEMPPQSPANIYYKV
         300       310       320       330       340      




333 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:35:04 2016 done: Sat Nov  5 05:35:05 2016
 Total Scan time:  1.790 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]