Result of FASTA (ccds) for
pF1KB4033
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB4033, 1262 aa
1>>>pF1KB4033 1262 - 1262 aa - 1262 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.4423+/-0.00123; mu= 21.6383+/- 0.074
mean_var=62.6507+/-12.486, 0's: 0 Z-trim(99.6): 36 B-trim: 18 in 1/49
Lambda= 0.162036
statistics sampled from 5770 (5788) to 5770 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.528), E-opt: 0.2 (0.178), width: 16
Scan time: 4.890
The best scores are: opt bits E(32554)
CCDS6694.1 IARS gene_id:3376|Hs108|chr9 (1262) 8407 1975.1 0
CCDS1523.1 IARS2 gene_id:55699|Hs108|chr1 (1012) 1050 255.2 6.2e-67
>>CCDS6694.1 IARS gene_id:3376|Hs108|chr9 (1262 aa)
initn: 8407 init1: 8407 opt: 8407 Z-score: 10608.3 bits: 1975.1 E(32554): 0
Smith-Waterman score: 8407; 100.0% identity (100.0% similar) in 1262 aa overlap (1-1262:1-1262)
10 20 30 40 50 60
pF1KB4 MLQQVPENINFPAEEEKILEFWTEFNCFQECLKQSKHKPKFTFYDGPPFATGLPHYGHIL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MLQQVPENINFPAEEEKILEFWTEFNCFQECLKQSKHKPKFTFYDGPPFATGLPHYGHIL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB4 AGTIKDIVTRYAHQSGFHVDRRFGWDCHGLPVEYEIDKTLGIRGPEDVAKMGITEYNNQC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 AGTIKDIVTRYAHQSGFHVDRRFGWDCHGLPVEYEIDKTLGIRGPEDVAKMGITEYNNQC
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB4 RAIVMRYSAEWKSTVSRLGRWIDFDNDYKTLYPQFMESVWWVFKQLYDKGLVYRGVKVMP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 RAIVMRYSAEWKSTVSRLGRWIDFDNDYKTLYPQFMESVWWVFKQLYDKGLVYRGVKVMP
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB4 FSTACNTPLSNFESHQNYKDVQDPSVFVTFPLEEDETVSLVAWTTTPWTLPSNLAVCVNP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 FSTACNTPLSNFESHQNYKDVQDPSVFVTFPLEEDETVSLVAWTTTPWTLPSNLAVCVNP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB4 EMQYVKIKDVARGRLLILMEARLSALYKLESDYEILERFPGAYLKGKKYRPLFDYFLKCK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 EMQYVKIKDVARGRLLILMEARLSALYKLESDYEILERFPGAYLKGKKYRPLFDYFLKCK
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB4 ENGAFTVLVDNYVKEEEGTGVVHQAPYFGAEDYRVCMDFNIIRKDSLPVCPVDASGCFTT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 ENGAFTVLVDNYVKEEEGTGVVHQAPYFGAEDYRVCMDFNIIRKDSLPVCPVDASGCFTT
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB4 EVTDFAGQYVKDADKSIIRTLKEQGRLLVATTFTHSYPFCWRSDTPLIYKAVPSWFVRVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 EVTDFAGQYVKDADKSIIRTLKEQGRLLVATTFTHSYPFCWRSDTPLIYKAVPSWFVRVE
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB4 NMVDQLLRNNDLCYWVPELVREKRFGNWLKDARDWTISRNRYWGTPIPLWVSDDFEEVVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 NMVDQLLRNNDLCYWVPELVREKRFGNWLKDARDWTISRNRYWGTPIPLWVSDDFEEVVC
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB4 IGSVAELEELSGAKISDLHRESVDHLTIPSRCGKGSLHRISEVFDCWFESGSMPYAQVHY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 IGSVAELEELSGAKISDLHRESVDHLTIPSRCGKGSLHRISEVFDCWFESGSMPYAQVHY
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB4 PFENKREFEDAFPADFIAEGIDQTRGWFYTLLVLATALFGQPPFKNVIVNGLVLASDGQK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 PFENKREFEDAFPADFIAEGIDQTRGWFYTLLVLATALFGQPPFKNVIVNGLVLASDGQK
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB4 MSKRKKNYPDPVSIIQKYGADALRLYLINSPVVRAENLRFKEEGVRDVLKDVLLPWYNAY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 MSKRKKNYPDPVSIIQKYGADALRLYLINSPVVRAENLRFKEEGVRDVLKDVLLPWYNAY
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB4 RFLIQNVLRLQKEEEIEFLYNENTVRESPNITDRWILSFMQSLIGFFETEMAAYRLYTVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 RFLIQNVLRLQKEEEIEFLYNENTVRESPNITDRWILSFMQSLIGFFETEMAAYRLYTVV
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB4 PRLVKFVDILTNWYVRMNRRRLKGENGMEDCVMALETLFSVLLSLCRLMAPYTPFLTELM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 PRLVKFVDILTNWYVRMNRRRLKGENGMEDCVMALETLFSVLLSLCRLMAPYTPFLTELM
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB4 YQNLKVLIDPVSVQDKDTLSIHYLMLPRVREELIDKKTESAVSQMQSVIELGRVIRDRKT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 YQNLKVLIDPVSVQDKDTLSIHYLMLPRVREELIDKKTESAVSQMQSVIELGRVIRDRKT
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB4 IPIKYPLKEIVVIHQDPEALKDIKSLEKYIIEELNVRKVTLSTDKNKYGIRLRAEPDHMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 IPIKYPLKEIVVIHQDPEALKDIKSLEKYIIEELNVRKVTLSTDKNKYGIRLRAEPDHMV
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB4 LGKRLKGAFKAVMTSIKQLSSEELEQFQKTGTIVVEGHELHDEDIRLMYTFDQATGGTAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 LGKRLKGAFKAVMTSIKQLSSEELEQFQKTGTIVVEGHELHDEDIRLMYTFDQATGGTAQ
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB4 FEAHSDAQALVLLDVTPDQSMVDEGMAREVINRIQKLRKKCNLVPTDEITVYYKAKSEGT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 FEAHSDAQALVLLDVTPDQSMVDEGMAREVINRIQKLRKKCNLVPTDEITVYYKAKSEGT
970 980 990 1000 1010 1020
1030 1040 1050 1060 1070 1080
pF1KB4 YLNSVIESHTEFIFTTIKAPLKPYPVSPSDKVLIQEKTQLKGSELEITLTRGSSLPGPAC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 YLNSVIESHTEFIFTTIKAPLKPYPVSPSDKVLIQEKTQLKGSELEITLTRGSSLPGPAC
1030 1040 1050 1060 1070 1080
1090 1100 1110 1120 1130 1140
pF1KB4 AYVNLNICANGSEQGGVLLLENPKGDNRLDLLKLKSVVTSIFGVKNTELAVFHDETEIQN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 AYVNLNICANGSEQGGVLLLENPKGDNRLDLLKLKSVVTSIFGVKNTELAVFHDETEIQN
1090 1100 1110 1120 1130 1140
1150 1160 1170 1180 1190 1200
pF1KB4 QTDLLSLSGKTLCVTAGSAPSLINSSSTLLCQYINLQLLNAKPQECLMGTVGTLLLENPL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 QTDLLSLSGKTLCVTAGSAPSLINSSSTLLCQYINLQLLNAKPQECLMGTVGTLLLENPL
1150 1160 1170 1180 1190 1200
1210 1220 1230 1240 1250 1260
pF1KB4 GQNGLTHQGLLYEAAKVFGLRSRKLKLFLNETQTQEITEDIPVKTLNMKTVYVSVLPTTA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS66 GQNGLTHQGLLYEAAKVFGLRSRKLKLFLNETQTQEITEDIPVKTLNMKTVYVSVLPTTA
1210 1220 1230 1240 1250 1260
pF1KB4 DF
::
CCDS66 DF
>>CCDS1523.1 IARS2 gene_id:55699|Hs108|chr1 (1012 aa)
initn: 764 init1: 235 opt: 1050 Z-score: 1315.1 bits: 255.2 E(32554): 6.2e-67
Smith-Waterman score: 1052; 29.1% identity (54.7% similar) in 919 aa overlap (1-858:65-923)
10 20
pF1KB4 MLQQVPENINFPAEEEKILEFWTEFNC-FQ
.: :. ... .... :. . .: :.
CCDS15 GATKRLLVRSVSGASNHQPNSNSGRYRDTVLLPQTSFPMKLLGRQQPDTELEIQQKCGFS
40 50 60 70 80 90
30 40 50 60 70 80
pF1KB4 ECL---KQSKHKPKFTFYDGPPFATGLPHYGHILAGTIKDIVTRYAHQSGFHVDRRFGWD
: .. : : .: ..::::.:.: :: :: : .:::..:. ..: .. :::
CCDS15 ELYSWQRERKVKTEFCLHDGPPYANGDPHVGHALNKILKDIANRFHMMNGSKIHFVPGWD
100 110 120 130 140 150
90 100 110 120 130 140
pF1KB4 CHGLPVEYEIDKTLGIRGPEDVAKMGITEYNNQCRAIVMRYSAEWKSTVSRLGRWIDFDN
:::::.: .. . :: : .... : : .. :... . ::. : : :..:
CCDS15 CHGLPIEIKVLSELG-REAQNLSAM---EIRKKARSFAKAAIEKQKSAFIRWGIMADWNN
160 170 180 190 200 210
150 160 170 180 190 200
pF1KB4 DYKTLYPQFMESVWWVFKQLYDKGLVYRGVKVMPFSTACNTPLSNFESHQNYKDVQDPSV
: :. .. . .: :.::::::::. : . .: . : :.. : . : . :. :.
CCDS15 CYYTFDGKYEAKQLRTFYQMYDKGLVYRSYKPVFWSPSSRTALAEAELEYNPEHVSR-SI
220 230 240 250 260
210 220 230 240 250
pF1KB4 FVTFPL-----------EEDETVSLVAWTTTPWTLPSNLAVCVNPEMQYVKIKDVARGRL
.: ::: . . ::...::: :::.:.: ::: :: .:. .: : :
CCDS15 YVKFPLLKPSPKLASLIDGSSPVSILVWTTQPWTIPANEAVCYMPESKYAVVKCSKSGDL
270 280 290 300 310 320
260 270 280 290 300 310
pF1KB4 LILMEARLSALYK-LESDYEILERFPGAYLK-GKKYRPLFDYFLKCKENGAFTVLVDNYV
.: ..... . ::. .: . . :. :. : .::. . : .: :.:
CCDS15 YVLAADKVASVASTLETTFETISTLSGVDLENGTCSHPLIP-------DKASPLLPANHV
330 340 350 360 370 380
320 330 340 350 360 370
pF1KB4 KEEEGTGVVHQAPYFGAEDYRVCMDFNIIRKDSLPV-CPVDASGCFTTEVTDFAGQYVKD
.:::.:: :: : ::: : . : ::. : :: .: :: : :: ...
CCDS15 TMAKGTGLVHTAPAHGMEDYGVASQHN------LPMDCLVDEDGVFT----DVAGPELQN
390 400 410 420 430
380 390 400 410 420
pF1KB4 ------ADKSIIRTLKEQGRLLVATTFTHSYPFCWRSDTPLIYKAVPSWFVRVENMVDQL
. .:. :. :: ..::::. ::. :.. .: .::. .
CCDS15 KAVLEEGTDVVIKMLQTAKNLLKEEKLVHSYPYDWRTKKPVVIRASKQWFINI-------
440 450 460 470 480
430 440 450 460 470
pF1KB4 LRNNDLCYWVPELVREKRF--GNWLK------DARD-WTISRNRYWGTPIPLWVSDDFEE
.:. . ::... .: :. :. : : : :::.: ::.:::.. .:
CCDS15 ---TDIKTAAKELLKKVKFIPGSALNGMVEMMDRRPYWCISRQRVWGVPIPVFHHKTKDE
490 500 510 520 530 540
480 490 500 510 520
pF1KB4 VVCIGS-----VAELEELSGAKIS-DLHRESVDHLTIPSRCG-KGSLHRI--SEVFDCWF
. :.: ...: : :. : : :.. . :. : .:. . ....: ::
CCDS15 YL-INSQTTEHIVKLVEQHGSDIWWTLPPEQLLPKEVLSEVGGPDALEYVPGQDILDIWF
550 560 570 580 590 600
530 540 550 560 570 580
pF1KB4 ESGSMPYAQVHYPFENKREFEDAFPADFIAEGIDQTRGWFYTLLVLATALFGQPPFKNVI
.::. .. : : ..: ::. :: :: ::: . :. ..: . :.:.::
CCDS15 DSGT-SWSYV-LPGPDQR-------ADLYLEGKDQLGGWFQSSLLTSVAARKRAPYKTVI
610 620 630 640 650
590 600 610 620 630
pF1KB4 VNGLVLASDGQKMSKRKKN--YPDPV-------SIIQKYGADALRLYLINSPVVRAENLR
:.:..:. :.:::: : .:: : : ::::.:: .. .: : .
CCDS15 VHGFTLGEKGEKMSKSLGNVIHPDVVVNGGQDQSKEPPYGADVLRWWVADSNVFTEVAIG
660 670 680 690 700 710
640 650 660 670 680 690
pF1KB4 FKEEGVRDVLKDVLLPWYNAYRFLIQNVLRLQKEEEIEFLYNENTVRESPNITDRWILSF
.: .. .: . :. :::. :: .. : ... .. . :...: .
CCDS15 ---PSVLNAARDDISKLRNTLRFLLGNVADFNPE-------TDSIPVNDMYVIDQYMLHL
720 730 740 750 760
700 710 720 730 740 750
pF1KB4 MQSLIGFFETEMAAYRLYTVVPRLVK--FVDILTNWYVRMNRRRL--KGENGME--DCVM
.:.: . . ::. . : ::.. .. :.:.: . . :: . :: . .:
CCDS15 LQDLANKI-TELYKQYDFGKVVRLLRTFYTRELSNFYFSIIKDRLYCEKENDPKRRSCQT
770 780 790 800 810 820
760 770 780 790 800 810
pF1KB4 ALETLFSVLLSLCRLMAPYTPFLTELMYQNLKVLIDPVSVQDKDTLSIHYLMLPRVREEL
:: ...:.. : .:: : :.: ..:.. . .: :: .: . ..
CCDS15 ALVEILDVIV---RSFAPILPHLAEEVFQHIPYIKEPKSVFRTGWISTSSIW----KKPG
830 840 850 860 870
820 830 840 850 860
pF1KB4 IDKKTESAVSQMQSVIEL--GRVIRDRKTIPIKYP--LKEIVVIHQDPEALKDIKSLEKY
... .::: .. .: . :. . :.: . : : ::. . :. :
CCDS15 LEEAVESACAMRDSFLGSIPGKNAAEYKVITVIEPGLLFEIIEMLQSEETSSTSQLNELM
880 890 900 910 920 930
870 880 890 900 910 920
pF1KB4 IIEELNVRKVTLSTDKNKYGIRLRAEPDHMVLGKRLKGAFKAVMTSIKQLSSEELEQFQK
CCDS15 MASESTLLAQEPREMTADVIELKGKFLINLEGGDIREESSYKVIVMPTTKEKCPRCWKYT
940 950 960 970 980 990
1262 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 23:03:26 2016 done: Fri Nov 4 23:03:27 2016
Total Scan time: 4.890 Total Display time: 0.090
Function used was FASTA [36.3.4 Apr, 2011]