FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB4011, 551 aa
  1>>>pF1KB4011 551 - 551 aa - 551 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.5497+/-0.000862; mu= 12.5325+/- 0.052
 mean_var=86.0338+/-17.181, 0's: 0 Z-trim(107.9): 21  B-trim: 95 in 1/50
 Lambda= 0.138274
 statistics sampled from 9836 (9843) to 9836 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.673), E-opt: 0.2 (0.302), width:  16
 Scan time:  3.530

The best scores are:                                      opt bits E(32554)
CCDS82646.1 CBSL gene_id:102724560|Hs108|chr21     ( 551) 3684 744.9 5.6e-215
CCDS13693.1 CBS gene_id:875|Hs108|chr21            ( 551) 3684 744.9 5.6e-215


>>CCDS82646.1 CBSL gene_id:102724560|Hs108|chr21          (551 aa)
 initn: 3684 init1: 3684 opt: 3684  Z-score: 3973.0  bits: 744.9 E(32554): 5.6e-215
Smith-Waterman score: 3684; 100.0% identity (100.0% similar) in 551 aa overlap (1-551:1-551)

               10        20        30        40        50        60
pF1KB4 MPSETPQAEVGPTGCPHRSGPHSAKGSLEKGSPEDKEAKEPLWIRPDAPSRCTWQLGRPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 MPSETPQAEVGPTGCPHRSGPHSAKGSLEKGSPEDKEAKEPLWIRPDAPSRCTWQLGRPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 SESPHHHTAPAKSPKILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 SESPHHHTAPAKSPKILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 RISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 RISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 LRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 LQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 LQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 YEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 YEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 AQELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKEEDLTEKKPWWWHLRVQELGLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 AQELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKEEDLTEKKPWWWHLRVQELGLS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 APLTVLPTITCGHTIEILREKGFDQAPVVDEAGVILGMVTLGNMLSSLLAGKVQPSDQVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 APLTVLPTITCGHTIEILREKGFDQAPVVDEAGVILGMVTLGNMLSSLLAGKVQPSDQVG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB4 KVIYKQFKQIRLTDTLGRLSHILEMDHFALVVHEQIQYHSTGKSSQRQMVFGVVTAIDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS82 KVIYKQFKQIRLTDTLGRLSHILEMDHFALVVHEQIQYHSTGKSSQRQMVFGVVTAIDLL
              490       500       510       520       530       540

              550 
pF1KB4 NFVAAQERDQK
       :::::::::::
CCDS82 NFVAAQERDQK
              550 

>>CCDS13693.1 CBS gene_id:875|Hs108|chr21                 (551 aa)
 initn: 3684 init1: 3684 opt: 3684  Z-score: 3973.0  bits: 744.9 E(32554): 5.6e-215
Smith-Waterman score: 3684; 100.0% identity (100.0% similar) in 551 aa overlap (1-551:1-551)

               10        20        30        40        50        60
pF1KB4 MPSETPQAEVGPTGCPHRSGPHSAKGSLEKGSPEDKEAKEPLWIRPDAPSRCTWQLGRPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MPSETPQAEVGPTGCPHRSGPHSAKGSLEKGSPEDKEAKEPLWIRPDAPSRCTWQLGRPA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB4 SESPHHHTAPAKSPKILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SESPHHHTAPAKSPKILPDILKKIGDTPMVRINKIGKKFGLKCELLAKCEFFNAGGSVKD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB4 RISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 RISLRMIEDAERDGTLKPGDTIIEPTSGNTGIGLALAAAVRGYRCIIVMPEKMSSEKVDV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB4 LRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LRALGAEIVRTPTNARFDSPESHVGVAWRLKNEIPNSHILDQYRNASNPLAHYDTTADEI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB4 LQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 LQQCDGKLDMLVASVGTGGTITGIARKLKEKCPGCRIIGVDPEGSILAEPEELNQTEQTT
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB4 YEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 YEVEGIGYDFIPTVLDRTVVDKWFKSNDEEAFTFARMLIAQEGLLCGGSAGSTVAVAVKA
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB4 AQELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKEEDLTEKKPWWWHLRVQELGLS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 AQELQEGQRCVVILPDSVRNYMTKFLSDRWMLQKGFLKEEDLTEKKPWWWHLRVQELGLS
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB4 APLTVLPTITCGHTIEILREKGFDQAPVVDEAGVILGMVTLGNMLSSLLAGKVQPSDQVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 APLTVLPTITCGHTIEILREKGFDQAPVVDEAGVILGMVTLGNMLSSLLAGKVQPSDQVG
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KB4 KVIYKQFKQIRLTDTLGRLSHILEMDHFALVVHEQIQYHSTGKSSQRQMVFGVVTAIDLL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 KVIYKQFKQIRLTDTLGRLSHILEMDHFALVVHEQIQYHSTGKSSQRQMVFGVVTAIDLL
              490       500       510       520       530       540

              550 
pF1KB4 NFVAAQERDQK
       :::::::::::
CCDS13 NFVAAQERDQK
              550 




551 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 05:32:00 2016 done: Sat Nov  5 05:32:00 2016
 Total Scan time:  3.530 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]