FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3982, 119 aa
  1>>>pF1KB3982 119 - 119 aa - 119 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.0038+/-0.000718; mu= 11.8438+/- 0.043
 mean_var=59.6257+/-11.816, 0's: 0 Z-trim(107.7): 8  B-trim: 0 in 0/55
 Lambda= 0.166095
 statistics sampled from 9718 (9723) to 9718 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.699), E-opt: 0.2 (0.299), width:  16
 Scan time:  1.130

The best scores are:                                      opt bits E(32554)
CCDS6163.1 RPS20 gene_id:6224|Hs108|chr8           ( 119)  766 191.4 1.2e-49
CCDS55231.1 RPS20 gene_id:6224|Hs108|chr8          ( 142)  726 181.8   1e-46


>>CCDS6163.1 RPS20 gene_id:6224|Hs108|chr8                (119 aa)
 initn: 766 init1: 766 opt: 766  Z-score: 1005.1  bits: 191.4 E(32554): 1.2e-49
Smith-Waterman score: 766; 100.0% identity (100.0% similar) in 119 aa overlap (1-119:1-119)

               10        20        30        40        50        60
pF1KB3 MAFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 MAFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKT
               10        20        30        40        50        60

               70        80        90       100       110         
pF1KB3 LRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS61 LRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVEVEVTIADA
               70        80        90       100       110         

>>CCDS55231.1 RPS20 gene_id:6224|Hs108|chr8               (142 aa)
 initn: 723 init1: 723 opt: 726  Z-score: 952.2  bits: 181.8 E(32554): 1e-46
Smith-Waterman score: 726; 95.8% identity (97.5% similar) in 119 aa overlap (1-118:1-119)

               10        20        30        40        50        60
pF1KB3 MAFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS55 MAFKDTGKTPVEPEVAIHRIRITLTSRNVKSLEKVCADLIRGAKEKNLKVKGPVRMPTKT
               10        20        30        40        50        60

               70        80        90       100       110          
pF1KB3 LRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVE-VEVTIADA
       ::::::::::::::::::::::::::::::::::::::::::::::::::: .: : :. 
CCDS55 LRITTRKTPCGEGSKTWDRFQMRIHKRLIDLHSPSEIVKQITSISIEPGVELIESTDAEP
               70        80        90       100       110       120

CCDS55 MDTEGQQYTLRSVFESPGTCPF
              130       140  




119 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 02:46:07 2016 done: Fri Nov  4 02:46:07 2016
 Total Scan time:  1.130 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]