FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3929, 258 aa
  1>>>pF1KB3929 258 - 258 aa - 258 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 6.7759+/-0.000778; mu= 8.6394+/- 0.047
 mean_var=100.2707+/-19.643, 0's: 0 Z-trim(110.9): 12  B-trim: 11 in 1/51
 Lambda= 0.128082
 statistics sampled from 11951 (11959) to 11951 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.73), E-opt: 0.2 (0.367), width:  16
 Scan time:  2.330

The best scores are:                                      opt bits E(32554)
CCDS13784.1 SNAP29 gene_id:9342|Hs108|chr22        ( 258) 1684 320.9 5.3e-88


>>CCDS13784.1 SNAP29 gene_id:9342|Hs108|chr22             (258 aa)
 initn: 1684 init1: 1684 opt: 1684  Z-score: 1693.3  bits: 320.9 E(32554): 5.3e-88
Smith-Waterman score: 1684; 100.0% identity (100.0% similar) in 258 aa overlap (1-258:1-258)

               10        20        30        40        50        60
pF1KB3 MSAYPKSYNPFDDDGEDEGARPAPWRDARDLPDGPDAPADRQQYLRQEVLRRAEATAAST
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 MSAYPKSYNPFDDDGEDEGARPAPWRDARDLPDGPDAPADRQQYLRQEVLRRAEATAAST
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 SRSLALMYESEKVGVASSEELARQRGVLERTEKMVDKMDQDLKISQKHINSIKSVFGGLV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 SRSLALMYESEKVGVASSEELARQRGVLERTEKMVDKMDQDLKISQKHINSIKSVFGGLV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB3 NYFKSKPVETPPEQNGTLTSQPNNRLKEAISTSKEQEAKYQASHPNLRKLDDTDPVPRGA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 NYFKSKPVETPPEQNGTLTSQPNNRLKEAISTSKEQEAKYQASHPNLRKLDDTDPVPRGA
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB3 GSAMSTDAYPKNPHLRAYHQKIDSNLDELSMGLGRLKDIALGMQTEIEEQDDILDRLTTK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS13 GSAMSTDAYPKNPHLRAYHQKIDSNLDELSMGLGRLKDIALGMQTEIEEQDDILDRLTTK
              190       200       210       220       230       240

              250        
pF1KB3 VDKLDVNIKSTERKVRQL
       ::::::::::::::::::
CCDS13 VDKLDVNIKSTERKVRQL
              250        




258 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:35:11 2016 done: Fri Nov  4 23:35:12 2016
 Total Scan time:  2.330 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]