FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB3876, 165 aa
  1>>>pF1KB3876 165 - 165 aa - 165 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.7956+/-0.000643; mu= 11.6084+/- 0.039
 mean_var=91.5397+/-18.250, 0's: 0 Z-trim(113.3): 2  B-trim: 242 in 1/51
 Lambda= 0.134051
 statistics sampled from 13978 (13980) to 13978 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.791), E-opt: 0.2 (0.429), width:  16
 Scan time:  2.000

The best scores are:                                      opt bits E(32554)
CCDS4792.1 RPS10 gene_id:6204|Hs108|chr6           ( 165) 1134 228.1 1.9e-60
CCDS43772.1 PLEC gene_id:5339|Hs108|chr8           (4684)  416 90.3 1.6e-17


>>CCDS4792.1 RPS10 gene_id:6204|Hs108|chr6                (165 aa)
 initn: 1134 init1: 1134 opt: 1134  Z-score: 1198.8  bits: 228.1 E(32554): 1.9e-60
Smith-Waterman score: 1134; 99.4% identity (99.4% similar) in 165 aa overlap (1-165:1-165)

               10        20        30        40        50        60
pF1KB3 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB3 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPAILRRSRPETGRPRPKGLEGERPARLTRG
       :::::::::::::::::::::::::::::::: :::::::::::::::::::::::::::
CCDS47 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRG
               70        80        90       100       110       120

              130       140       150       160     
pF1KB3 EADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPPQ
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPPQ
              130       140       150       160     

>>CCDS43772.1 PLEC gene_id:5339|Hs108|chr8                (4684 aa)
 initn: 403 init1: 296 opt: 416  Z-score: 428.1  bits: 90.3 E(32554): 1.6e-17
Smith-Waterman score: 419; 51.8% identity (70.2% similar) in 141 aa overlap (1-129:5-142)

                   10        20        30          40        50    
pF1KB3     MLMPKKNRIAIYELLFKEGVMVAKKDVHMPK--HPELADKNVPNLHVMKAMQSLKS
           ::::. .  ::::.::.::::::::: . :.  ::..   .: ::.::.:: ::..
CCDS43 MVAGMLMPRDQLRAIYEVLFREGVMVAKKD-RRPRSLHPHVP--GVTNLQVMRAMASLRA
               10        20        30         40          50       

           60        70        80        90              100       
pF1KB3 RGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPAILRRSR-------PETGRPRPK
       :: :.: ::: ::::::::::: .::.::::::::::: :.: :       :    :. .
CCDS43 RGLVRETFAWCHFYWYLTNEGIAHLRQYLHLPPEIVPASLQRVRRPVAMVMPARRTPHVQ
        60        70        80        90       100       110       

       110       120          130       140       150       160    
pF1KB3 GLEGERPARLTRGE---ADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPP
       ...:   .   ::     .. .:::                                   
CCDS43 AVQGPLGSPPKRGPLPTEEQRVYRRKELEEVSPETPVVPATTQRTLARPGPEPAPATDER
       120       130       140       150       160       170       




165 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:53:42 2016 done: Fri Nov  4 20:53:43 2016
 Total Scan time:  2.000 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]