FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB3876, 165 aa 1>>>pF1KB3876 165 - 165 aa - 165 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.7956+/-0.000643; mu= 11.6084+/- 0.039 mean_var=91.5397+/-18.250, 0's: 0 Z-trim(113.3): 2 B-trim: 242 in 1/51 Lambda= 0.134051 statistics sampled from 13978 (13980) to 13978 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.791), E-opt: 0.2 (0.429), width: 16 Scan time: 2.000 The best scores are: opt bits E(32554) CCDS4792.1 RPS10 gene_id:6204|Hs108|chr6 ( 165) 1134 228.1 1.9e-60 CCDS43772.1 PLEC gene_id:5339|Hs108|chr8 (4684) 416 90.3 1.6e-17 >>CCDS4792.1 RPS10 gene_id:6204|Hs108|chr6 (165 aa) initn: 1134 init1: 1134 opt: 1134 Z-score: 1198.8 bits: 228.1 E(32554): 1.9e-60 Smith-Waterman score: 1134; 99.4% identity (99.4% similar) in 165 aa overlap (1-165:1-165) 10 20 30 40 50 60 pF1KB3 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS47 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPKHPELADKNVPNLHVMKAMQSLKSRGYVKE 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB3 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPAILRRSRPETGRPRPKGLEGERPARLTRG :::::::::::::::::::::::::::::::: ::::::::::::::::::::::::::: CCDS47 QFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPATLRRSRPETGRPRPKGLEGERPARLTRG 70 80 90 100 110 120 130 140 150 160 pF1KB3 EADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPPQ ::::::::::::::::::::::::::::::::::::::::::::: CCDS47 EADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPPQ 130 140 150 160 >>CCDS43772.1 PLEC gene_id:5339|Hs108|chr8 (4684 aa) initn: 403 init1: 296 opt: 416 Z-score: 428.1 bits: 90.3 E(32554): 1.6e-17 Smith-Waterman score: 419; 51.8% identity (70.2% similar) in 141 aa overlap (1-129:5-142) 10 20 30 40 50 pF1KB3 MLMPKKNRIAIYELLFKEGVMVAKKDVHMPK--HPELADKNVPNLHVMKAMQSLKS ::::. . ::::.::.::::::::: . :. ::.. .: ::.::.:: ::.. CCDS43 MVAGMLMPRDQLRAIYEVLFREGVMVAKKD-RRPRSLHPHVP--GVTNLQVMRAMASLRA 10 20 30 40 50 60 70 80 90 100 pF1KB3 RGYVKEQFAWRHFYWYLTNEGIQYLRDYLHLPPEIVPAILRRSR-------PETGRPRPK :: :.: ::: ::::::::::: .::.::::::::::: :.: : : :. . CCDS43 RGLVRETFAWCHFYWYLTNEGIAHLRQYLHLPPEIVPASLQRVRRPVAMVMPARRTPHVQ 60 70 80 90 100 110 110 120 130 140 150 160 pF1KB3 GLEGERPARLTRGE---ADRDTYRRSAVPPGADKKAEAGAGSATEFQFRGGFGRGRGQPP ...: . :: .. .::: CCDS43 AVQGPLGSPPKRGPLPTEEQRVYRRKELEEVSPETPVVPATTQRTLARPGPEPAPATDER 120 130 140 150 160 170 165 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 20:53:42 2016 done: Fri Nov 4 20:53:43 2016 Total Scan time: 2.000 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]