Result of FASTA (ccds) for
pF1KB3824
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3824, 1036 aa
1>>>pF1KB3824 1036 - 1036 aa - 1036 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.7278+/-0.00126; mu= 16.6992+/- 0.076
mean_var=204.5671+/-37.659, 0's: 0 Z-trim(109.9): 138 B-trim: 40 in 1/49
Lambda= 0.089672
statistics sampled from 11091 (11239) to 11091 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.678), E-opt: 0.2 (0.345), width: 16
Scan time: 4.730
The best scores are: opt bits E(32554)
CCDS1783.1 CRIM1 gene_id:51232|Hs108|chr2 (1036) 7794 1022.5 0
CCDS5442.1 BMPER gene_id:168667|Hs108|chr7 ( 685) 450 72.2 4.3e-12
>>CCDS1783.1 CRIM1 gene_id:51232|Hs108|chr2 (1036 aa)
initn: 7794 init1: 7794 opt: 7794 Z-score: 5463.3 bits: 1022.5 E(32554): 0
Smith-Waterman score: 7794; 99.9% identity (99.9% similar) in 1036 aa overlap (1-1036:1-1036)
10 20 30 40 50 60
pF1KB3 MYLVAGDRGLAGCGHLLVSLLGLLLLLARSGTRALVCLPCDESKCEEPRNCPGSIVQGVC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 MYLVAGDRGLAGCGHLLVSLLGLLLLLARSGTRALVCLPCDESKCEEPRNCPGSIVQGVC
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 GCCYTCASQRNESCGGTFGIYGTCDRGLRCVIRPPLNGDSLTEYEAGVCEDENWTDDQLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 GCCYTCASQRNESCGGTFGIYGTCDRGLRCVIRPPLNGDSLTEYEAGVCEDENWTDDQLL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 GFKPCNENLIAGCNIINGKCECNTIRTCSNPFEFPSQDMCLSALKRIEEEKPDCSKARCE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 GFKPCNENLIAGCNIINGKCECNTIRTCSNPFEFPSQDMCLSALKRIEEEKPDCSKARCE
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 VQFSPRCPEDSVLIEGYAPPGECCPLPSRCVCNPAGCLRKVCQPGNLNILVSKASGKPGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 VQFSPRCPEDSVLIEGYAPPGECCPLPSRCVCNPAGCLRKVCQPGNLNILVSKASGKPGE
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 CCDLYECKPVFGVDCRTVECPPVQQTACPPDSYETQVRLTADGCCTLPTRCECLSGLCGF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 CCDLYECKPVFGVDCRTVECPPVQQTACPPDSYETQVRLTADGCCTLPTRCECLSGLCGF
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 PVCEVGSTPRIVSRGDGTPGKCCDVFECVNDTKPACVFNNVEYYDGDMFRMDNCRFCRCQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 PVCEVGSTPRIVSRGDGTPGKCCDVFECVNDTKPACVFNNVEYYDGDMFRMDNCRFCRCQ
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 GGVAICFTAQCGEINCERYYVPEGECCPVCEDPVYPFNNPAGCYANGLILAHGDRWREDD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 GGVAICFTAQCGEINCERYYVPEGECCPVCEDPVYPFNNPAGCYANGLILAHGDRWREDD
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 CTFCQCVNGERHFVATVCGQTCTNPVKVPGECCPVCEEPTIITVDPPACGELSNCTLTGK
:::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 CTFCQCVNGERHCVATVCGQTCTNPVKVPGECCPVCEEPTIITVDPPACGELSNCTLTGK
430 440 450 460 470 480
490 500 510 520 530 540
pF1KB3 DCINGFKRDHNGCRTCQCINTEELCSERKQGCTLNCPFGFLTDAQNCEICECRPRPKKCR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 DCINGFKRDHNGCRTCQCINTEELCSERKQGCTLNCPFGFLTDAQNCEICECRPRPKKCR
490 500 510 520 530 540
550 560 570 580 590 600
pF1KB3 PIICDKYCPLGLLKNKHGCDICRCKKCPELSCSKICPLGFQQDSHGCLICKCREASASAG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 PIICDKYCPLGLLKNKHGCDICRCKKCPELSCSKICPLGFQQDSHGCLICKCREASASAG
550 560 570 580 590 600
610 620 630 640 650 660
pF1KB3 PPILSGTCLTVDGHHHKNEESWHDGCRECYCLNGREMCALITCPVPACGNPTIHPGQCCP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 PPILSGTCLTVDGHHHKNEESWHDGCRECYCLNGREMCALITCPVPACGNPTIHPGQCCP
610 620 630 640 650 660
670 680 690 700 710 720
pF1KB3 SCADDFVVQKPELSTPSICHAPGGEYFVEGETWNIDSCTQCTCHSGRVLCETEVCPPLLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 SCADDFVVQKPELSTPSICHAPGGEYFVEGETWNIDSCTQCTCHSGRVLCETEVCPPLLC
670 680 690 700 710 720
730 740 750 760 770 780
pF1KB3 QNPSRTQDSCCPQCTDQPFRPSLSRNNSVPNYCKNDEGDIFLAAESWKPDVCTSCICIDS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 QNPSRTQDSCCPQCTDQPFRPSLSRNNSVPNYCKNDEGDIFLAAESWKPDVCTSCICIDS
730 740 750 760 770 780
790 800 810 820 830 840
pF1KB3 VISCFSESCPSVSCERPVLRKGQCCPYCIEDTIPKKVVCHFSGKAYADEERWDLDSCTHC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 VISCFSESCPSVSCERPVLRKGQCCPYCIEDTIPKKVVCHFSGKAYADEERWDLDSCTHC
790 800 810 820 830 840
850 860 870 880 890 900
pF1KB3 YCLQGQTLCSTVSCPPLPCVEPINVEGSCCPMCPEMYVPEPTNIPIEKTNHRGEVDLEVP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 YCLQGQTLCSTVSCPPLPCVEPINVEGSCCPMCPEMYVPEPTNIPIEKTNHRGEVDLEVP
850 860 870 880 890 900
910 920 930 940 950 960
pF1KB3 LWPTPSENDIVHLPRDMGHLQVDYRDNRLHPSEDSSLDSIASVVVPIIICLSIIIAFLFI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 LWPTPSENDIVHLPRDMGHLQVDYRDNRLHPSEDSSLDSIASVVVPIIICLSIIIAFLFI
910 920 930 940 950 960
970 980 990 1000 1010 1020
pF1KB3 NQKKQWIPLLCWYRTPTKPSSLNNQLVSVDCKKGTRVQVDSSQRMLRIAEPDARFSGFYS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS17 NQKKQWIPLLCWYRTPTKPSSLNNQLVSVDCKKGTRVQVDSSQRMLRIAEPDARFSGFYS
970 980 990 1000 1010 1020
1030
pF1KB3 MQKQNHLQADNFYQTV
::::::::::::::::
CCDS17 MQKQNHLQADNFYQTV
1030
>>CCDS5442.1 BMPER gene_id:168667|Hs108|chr7 (685 aa)
initn: 241 init1: 114 opt: 450 Z-score: 330.5 bits: 72.2 E(32554): 4.3e-12
Smith-Waterman score: 569; 26.2% identity (48.7% similar) in 557 aa overlap (495-1027:22-508)
470 480 490 500 510 520
pF1KB3 DPPACGELSNCTLTGKDCINGFKRDHNGCRTCQCINTEELCSERKQGCTLNCPFGFLTDA
:: :. :: : .. .::: .
CCDS54 MLWFSGVGALAERYCRRSPGITC-CVLLLLNCS----GVPMSLASSFLTGS
10 20 30 40
530 540 550 560 570 580
pF1KB3 QNCEICECRPRPKKCR-PIICDKYCPLGLLKNKHGCDICRCKKCPELSCSKICPLGFQQD
. .:. . . . :.: :. : . . ::. :. .::: : :. : :...:
CCDS54 ----VAKCENEGEVLQIPFITDNPCIMCVCLNKEV--TCKREKCPVL--SRDCALAIKQR
50 60 70 80 90
590 600 610 620 630 640
pF1KB3 SHGCLICKCREASASAGPPILSGTCLTVDGHHHKNEESWHDGCRECY---CLNGREMCAL
. : :: : : : .:. ... .:.. . : : .: .
CCDS54 GACCEQCK--------G-------C-TYEGNTYNSSFKWQSPAEPCVLRQCQEGVVTESG
100 110 120 130 140
650 660 670 680 690 700
pF1KB3 ITCPVPACGNPTIHPGQCCPSCADDFVVQKPELSTPSICHAPGGEYFVEGETWNIDSCTQ
. : : : :: : :.:::.: : .. . : :. :: ..::.
CCDS54 VRCVVH-CKNPLEHLGMCCPTC--------PGCVFEGVQYQEGEEFQPEG-----SKCTK
150 160 170 180
710 720 730 740 750
pF1KB3 CTCHSGRVLCETEVCPPLLC-QNPSRTQDS-CCPQCTDQ------PFRPSLSRNNSVPNY
:.: .::. : :::: : : :. :. . :::.: : :: : :..
CCDS54 CSCTGGRTQCVREVCPILSCPQHLSHIPPGQCCPKCLGQRKVFDLPFGSCLFRSDVY---
190 200 210 220 230 240
760 770 780 790 800 810
pF1KB3 CKNDEGDIFLAAESWKPDVCTSCICIDSVISCFSESCPSVSCERPVLRKGQ--CCPYCIE
:.:. :: : ::.: : ::.. : . .:. .:: :: :.
CCDS54 ---DNGSSFLY------DNCTACTCRDSTVVCKRKCSHPGGCD-----QGQEGCCEECLL
250 260 270 280 290
820 830 840 850 860
pF1KB3 DTIPKKV-VCHFSGKAYADEERWDLDSCTHCYCLQGQTLCSTVSCPPL---PCVEPINVE
. :. . ::.:..: . : : :. .:: : :..:.: : . .: :. : . .: .
CCDS54 RVPPEDIKVCKFGNKIFQDGEMWSSINCTICACVKGRTECRNKQCIPISSCPQGKILNRK
300 310 320 330 340 350
870 880 890 900 910 920
pF1KB3 GSCCPMCPEMYVPEPTNIPIEKTNHRGEVDLEVPLWPTPSENDIVH-LPRDMGHLQVDYR
: :::.: : .: . : . : .. . . ... . .:: .
CCDS54 G-CCPICTE----KPGVCTVFGDPHYNTFDGRTFNFQGTCQYVLTKDCSSPASPFQVLVK
360 370 380 390 400
930 940 950 960 970 980
pF1KB3 DNRLHPSEDSSLDSIASVVVPIIICLSIIIAFLFINQKKQWIPLLCWYRTPTKPSSLNNQ
.. . : :. :. . :. : . . . : : : :.: .:..
CCDS54 NDARRTRSFSWTKSVELVLGESRVSLQ---QHLTVRWNGSRIALPC--RAPHFHIDLDGY
410 420 430 440 450 460
990 1000 1010 1020 1030
pF1KB3 LVSVDCKKGTRVQVDSSQRMLRIAEPDAR-----FSGFYSMQKQNHLQADNFYQTV
:..: : : ... :... . .: : . . : :. .:.. :
CCDS54 LLKVTTKAGLEISWDGDSFVEVMAAPHLKGKLCGLCGNYNGHKRDDLIGGDGNFKFDVDD
470 480 490 500 510 520
CCDS54 FAESWRVESNEFCNRPQRKPVPELCQGTVKVKLRAHRECQKLKSWEFQTCHSTVDYATFY
530 540 550 560 570 580
1036 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 14:00:18 2016 done: Thu Nov 3 14:00:19 2016
Total Scan time: 4.730 Total Display time: 0.040
Function used was FASTA [36.3.4 Apr, 2011]