Result of FASTA (omim) for
pF1KB3766
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB3766, 504 aa
1>>>pF1KB3766 504 - 504 aa - 504 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0506+/-0.000433; mu= 11.1633+/- 0.027
mean_var=145.5605+/-29.939, 0's: 0 Z-trim(114.4): 103 B-trim: 303 in 1/53
Lambda= 0.106305
statistics sampled from 24111 (24232) to 24111 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.639), E-opt: 0.2 (0.284), width: 16
Scan time: 7.930
The best scores are: opt bits E(85289)
NP_006251 (OMIM: 601184,616192) dnaJ homolog subfa ( 504) 3318 521.0 3.1e-147
XP_016876163 (OMIM: 601184,616192) PREDICTED: dnaJ ( 421) 2782 438.8 1.5e-122
XP_011519406 (OMIM: 601184,616192) PREDICTED: dnaJ ( 533) 2519 398.5 2.5e-110
XP_011519407 (OMIM: 601184,616192) PREDICTED: dnaJ ( 450) 2506 396.5 8.7e-110
XP_016876164 (OMIM: 601184,616192) PREDICTED: dnaJ ( 383) 2503 395.9 1.1e-109
NP_003306 (OMIM: 601964) dnaJ homolog subfamily C ( 494) 638 110.0 1.6e-23
XP_011523469 (OMIM: 601964) PREDICTED: dnaJ homolo ( 438) 609 105.5 3.3e-22
XP_011523471 (OMIM: 601964) PREDICTED: dnaJ homolo ( 438) 609 105.5 3.3e-22
XP_011523470 (OMIM: 601964) PREDICTED: dnaJ homolo ( 438) 609 105.5 3.3e-22
NP_001138238 (OMIM: 601964) dnaJ homolog subfamily ( 438) 609 105.5 3.3e-22
XP_016880483 (OMIM: 601964) PREDICTED: dnaJ homolo ( 438) 609 105.5 3.3e-22
XP_016867122 (OMIM: 603511,611332) PREDICTED: dnaJ ( 211) 280 54.8 2.9e-07
NP_005485 (OMIM: 603511,611332) dnaJ homolog subfa ( 241) 280 54.8 3.2e-07
XP_006715886 (OMIM: 603511,611332) PREDICTED: dnaJ ( 257) 280 54.9 3.4e-07
NP_490647 (OMIM: 603511,611332) dnaJ homolog subfa ( 326) 280 54.9 4e-07
XP_011514006 (OMIM: 603511,611332) PREDICTED: dnaJ ( 334) 280 55.0 4.1e-07
XP_005249572 (OMIM: 603511,611332) PREDICTED: dnaJ ( 334) 280 55.0 4.1e-07
XP_005249573 (OMIM: 603511,611332) PREDICTED: dnaJ ( 334) 280 55.0 4.1e-07
XP_006713582 (OMIM: 611337) PREDICTED: dnaJ homolo ( 232) 266 52.7 1.4e-06
NP_699161 (OMIM: 611337) dnaJ homolog subfamily B ( 232) 266 52.7 1.4e-06
NP_057390 (OMIM: 611341) dnaJ homolog subfamily B ( 358) 251 50.5 9.4e-06
XP_006716814 (OMIM: 611328) PREDICTED: dnaJ homolo ( 348) 249 50.2 1.1e-05
XP_005251485 (OMIM: 611328) PREDICTED: dnaJ homolo ( 348) 249 50.2 1.1e-05
NP_036398 (OMIM: 611328) dnaJ homolog subfamily B ( 348) 249 50.2 1.1e-05
NP_660157 (OMIM: 611336) dnaJ homolog subfamily B ( 309) 248 50.0 1.2e-05
XP_011516144 (OMIM: 611328) PREDICTED: dnaJ homolo ( 420) 249 50.3 1.3e-05
NP_001128477 (OMIM: 611328) dnaJ homolog subfamily ( 420) 249 50.3 1.3e-05
NP_001128476 (OMIM: 611328) dnaJ homolog subfamily ( 462) 249 50.3 1.4e-05
XP_005269989 (OMIM: 608376) PREDICTED: dnaJ homolo ( 409) 246 49.8 1.8e-05
NP_060096 (OMIM: 608376) dnaJ homolog subfamily B ( 409) 246 49.8 1.8e-05
NP_001002762 (OMIM: 608376) dnaJ homolog subfamily ( 409) 246 49.8 1.8e-05
XP_005269988 (OMIM: 608376) PREDICTED: dnaJ homolo ( 411) 246 49.8 1.8e-05
NP_001034639 (OMIM: 604139,614881,617017) dnaJ hom ( 277) 243 49.2 1.8e-05
NP_006727 (OMIM: 604139,614881,617017) dnaJ homolo ( 324) 243 49.3 2.1e-05
NP_001304028 (OMIM: 611327) dnaJ homolog subfamily ( 337) 231 47.4 7.6e-05
NP_008965 (OMIM: 611327) dnaJ homolog subfamily B ( 337) 231 47.4 7.6e-05
NP_006136 (OMIM: 604572) dnaJ homolog subfamily B ( 340) 229 47.1 9.4e-05
NP_036460 (OMIM: 602634) dnaJ homolog subfamily B ( 223) 225 46.4 0.00011
NP_001128582 (OMIM: 608382) dnaJ homolog subfamily ( 453) 226 46.8 0.00016
NP_005138 (OMIM: 608382) dnaJ homolog subfamily A ( 480) 226 46.8 0.00017
NP_001530 (OMIM: 602837) dnaJ homolog subfamily A ( 397) 224 46.4 0.00018
NP_001304032 (OMIM: 611327) dnaJ homolog subfamily ( 77) 211 43.8 0.00021
NP_001012339 (OMIM: 617048,617052) dnaJ homolog su ( 531) 214 45.0 0.00065
XP_005248307 (OMIM: 617048,617052) PREDICTED: dnaJ ( 553) 214 45.0 0.00067
NP_919259 (OMIM: 617048,617052) dnaJ homolog subfa ( 576) 214 45.0 0.00069
XP_011512268 (OMIM: 617048,617052) PREDICTED: dnaJ ( 598) 214 45.0 0.00071
XP_005248306 (OMIM: 617048,617052) PREDICTED: dnaJ ( 631) 214 45.1 0.00074
XP_011512267 (OMIM: 617048,617052) PREDICTED: dnaJ ( 676) 214 45.1 0.00078
NP_001139547 (OMIM: 611477) RNA polymerase II-asso ( 631) 209 44.3 0.0013
NP_078880 (OMIM: 611477) RNA polymerase II-associa ( 665) 209 44.3 0.0013
>>NP_006251 (OMIM: 601184,616192) dnaJ homolog subfamily (504 aa)
initn: 3318 init1: 3318 opt: 3318 Z-score: 2764.3 bits: 521.0 E(85289): 3.1e-147
Smith-Waterman score: 3318; 100.0% identity (100.0% similar) in 504 aa overlap (1-504:1-504)
10 20 30 40 50 60
pF1KB3 MVAPGSVTSRLGSVFPFLLVLVDLQYEGAECGVNADVEKHLELGKKLLAAGQLADALSQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MVAPGSVTSRLGSVFPFLLVLVDLQYEGAECGVNADVEKHLELGKKLLAAGQLADALSQF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB3 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB3 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHEL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB3 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 SLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB3 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 IAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAI
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB3 QDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 QDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB3 WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLDAESQQGGGGNPFHR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLDAESQQGGGGNPFHR
430 440 450 460 470 480
490 500
pF1KB3 SWNSWQGFNPFSSGGPFRFKFHFN
::::::::::::::::::::::::
NP_006 SWNSWQGFNPFSSGGPFRFKFHFN
490 500
>>XP_016876163 (OMIM: 601184,616192) PREDICTED: dnaJ hom (421 aa)
initn: 2782 init1: 2782 opt: 2782 Z-score: 2321.1 bits: 438.8 E(85289): 1.5e-122
Smith-Waterman score: 2782; 100.0% identity (100.0% similar) in 421 aa overlap (84-504:1-421)
60 70 80 90 100 110
pF1KB3 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH
::::::::::::::::::::::::::::::
XP_016 MGKSKAALPDLTKVIQLKMDFTAARLQRGH
10 20 30
120 130 140 150 160 170
pF1KB3 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAA
40 50 60 70 80 90
180 190 200 210 220 230
pF1KB3 IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYY
100 110 120 130 140 150
240 250 260 270 280 290
pF1KB3 QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYES
160 170 180 190 200 210
300 310 320 330 340 350
pF1KB3 VMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 VMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIE
220 230 240 250 260 270
360 370 380 390 400 410
pF1KB3 EMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 EMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKA
280 290 300 310 320 330
420 430 440 450 460 470
pF1KB3 YRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLDAESQQGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLDAESQQGG
340 350 360 370 380 390
480 490 500
pF1KB3 GGNPFHRSWNSWQGFNPFSSGGPFRFKFHFN
:::::::::::::::::::::::::::::::
XP_016 GGNPFHRSWNSWQGFNPFSSGGPFRFKFHFN
400 410 420
>>XP_011519406 (OMIM: 601184,616192) PREDICTED: dnaJ hom (533 aa)
initn: 2481 init1: 2481 opt: 2519 Z-score: 2101.8 bits: 398.5 E(85289): 2.5e-110
Smith-Waterman score: 3250; 94.6% identity (94.6% similar) in 533 aa overlap (1-504:1-533)
10 20 30 40 50 60
pF1KB3 MVAPGSVTSRLGSVFPFLLVLVDLQYEGAECGVNADVEKHLELGKKLLAAGQLADALSQF
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MVAPGSVTSRLGSVFPFLLVLVDLQYEGAECGVNADVEKHLELGKKLLAAGQLADALSQF
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB3 HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 HAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK
70 80 90 100 110 120
130 140 150
pF1KB3 LDEAEDDFKKV-----------------------------LKSNPSENEEKEAQSQLIKS
::::::::::: ::::::::::::::::::::
XP_011 LDEAEDDFKKVVFPVPSLLGLQRSLLDDLYLLFWFFLMKKLKSNPSENEEKEAQSQLIKS
130 140 150 160 170 180
160 170 180 190 200 210
pF1KB3 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDL
190 200 210 220 230 240
220 230 240 250 260 270
pF1KB3 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL
250 260 270 280 290 300
280 290 300 310 320 330
pF1KB3 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSE
310 320 330 340 350 360
340 350 360 370 380 390
pF1KB3 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQ
370 380 390 400 410 420
400 410 420 430 440 450
pF1KB3 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 KRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSD
430 440 450 460 470 480
460 470 480 490 500
pF1KB3 PEMRKKFDDGEDPLDAESQQGGGGNPFHRSWNSWQGFNPFSSGGPFRFKFHFN
:::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PEMRKKFDDGEDPLDAESQQGGGGNPFHRSWNSWQGFNPFSSGGPFRFKFHFN
490 500 510 520 530
>>XP_011519407 (OMIM: 601184,616192) PREDICTED: dnaJ hom (450 aa)
initn: 2481 init1: 2481 opt: 2506 Z-score: 2092.0 bits: 396.5 E(85289): 8.7e-110
Smith-Waterman score: 2714; 93.6% identity (93.6% similar) in 450 aa overlap (84-504:1-450)
60 70 80 90 100 110
pF1KB3 ADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGH
::::::::::::::::::::::::::::::
XP_011 MGKSKAALPDLTKVIQLKMDFTAARLQRGH
10 20 30
120 130 140
pF1KB3 LLLKQGKLDEAEDDFKKV-----------------------------LKSNPSENEEKEA
:::::::::::::::::: :::::::::::::
XP_011 LLLKQGKLDEAEDDFKKVVFPVPSLLGLQRSLLDDLYLLFWFFLMKKLKSNPSENEEKEA
40 50 60 70 80 90
150 160 170 180 190 200
pF1KB3 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEP
100 110 120 130 140 150
210 220 230 240 250 260
pF1KB3 RKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQ
160 170 180 190 200 210
270 280 290 300 310 320
pF1KB3 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVE
220 230 240 250 260 270
330 340 350 360 370 380
pF1KB3 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQ
280 290 300 310 320 330
390 400 410 420 430 440
pF1KB3 RLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAA
340 350 360 370 380 390
450 460 470 480 490 500
pF1KB3 AKEVLSDPEMRKKFDDGEDPLDAESQQGGGGNPFHRSWNSWQGFNPFSSGGPFRFKFHFN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 AKEVLSDPEMRKKFDDGEDPLDAESQQGGGGNPFHRSWNSWQGFNPFSSGGPFRFKFHFN
400 410 420 430 440 450
>>XP_016876164 (OMIM: 601184,616192) PREDICTED: dnaJ hom (383 aa)
initn: 2503 init1: 2503 opt: 2503 Z-score: 2090.4 bits: 395.9 E(85289): 1.1e-109
Smith-Waterman score: 2503; 100.0% identity (100.0% similar) in 377 aa overlap (128-504:7-383)
100 110 120 130 140 150
pF1KB3 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRL
::::::::::::::::::::::::::::::
XP_016 MCFLHFFKKVLKSNPSENEEKEAQSQLIKSDEMQRL
10 20 30
160 170 180 190 200 210
pF1KB3 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL
40 50 60 70 80 90
220 230 240 250 260 270
pF1KB3 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 KNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEE
100 110 120 130 140 150
280 290 300 310 320 330
pF1KB3 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEP
160 170 180 190 200 210
340 350 360 370 380 390
pF1KB3 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYK
220 230 240 250 260 270
400 410 420 430 440 450
pF1KB3 ILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 ILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEMRKK
280 290 300 310 320 330
460 470 480 490 500
pF1KB3 FDDGEDPLDAESQQGGGGNPFHRSWNSWQGFNPFSSGGPFRFKFHFN
:::::::::::::::::::::::::::::::::::::::::::::::
XP_016 FDDGEDPLDAESQQGGGGNPFHRSWNSWQGFNPFSSGGPFRFKFHFN
340 350 360 370 380
>>NP_003306 (OMIM: 601964) dnaJ homolog subfamily C memb (494 aa)
initn: 323 init1: 187 opt: 638 Z-score: 543.1 bits: 110.0 E(85289): 1.6e-23
Smith-Waterman score: 638; 28.2% identity (62.8% similar) in 479 aa overlap (36-503:27-493)
10 20 30 40 50 60
pF1KB3 SVTSRLGSVFPFLLVLVDLQYEGAECGVNADVEKHLELGKKLLAAGQLADALSQFHAAVD
..: : :. : . .: . . :.:
NP_003 MAAAAECDVVMAATEPELLDDQEAKREAETFKEQGNAYYAKKDYNEAYNYYTKAID
10 20 30 40 50
70 80 90 100 110 120
pF1KB3 GDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAE
: : : ::.... .:. . :: : . ..: .:. ..:..:. :. :. :
NP_003 MCPKNASYYGNRAATLMMLGRFREALGDAQQSVRLDDSFVRGHLREGKCHLSLGNAMAAC
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB3 DDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV
.:...:. .... .::... ... ... .. : . : . :. .. .:. ::
NP_003 RSFQRALEL---DHKNAQAQQEFKNANAVMEYEKIAETDFEKRDFRKVVFCMDRALEFAP
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB3 WDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFY-KISTLYYQLGDHELSLSE
... :.:::. :. .: : . .. . :..:.: . :::. : ...
NP_003 ACHRFKILKAECLAMLGRYPEAQSVASDILRMDSTNADALYVRGLCLYYE-DCIEKAVQF
180 190 200 210 220 230
250 260 270 280 290 300
pF1KB3 VRECLKLDQDHKR-CFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAE
. :.. ::.. :.: ...: :. :.... ...: : : : .. .:.
NP_003 FVQALRMAPDHEKACIAC-RNAKALKAKKEDGNKAFKEGNYKLAYELYTEALGIDPN---
240 250 260 270 280
310 320 330 340 350
pF1KB3 YTVRSKERI-CH---CFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEA
..... .. :. :: .: .::. :....... ..: ::. :. :.:.::
NP_003 -NIKTNAKLYCNRGTVNSKLRKLDDAIEDCTNAVKLDDTYIKAYLRRAQCYMDTEQYEEA
290 300 310 320 330 340
360 370 380 390 400 410
pF1KB3 IQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLAL
..::: . . .:. .. .. :..:: ::.:...:::::::: .::...:: ::::: ::
NP_003 VRDYEKVYQ-TEKTKEHKQLLKNAQLELKKSKRKDYYKILGVDKNASEDEIKKAYRKRAL
350 360 370 380 390 400
420 430 440 450 460 470
pF1KB3 QWHPDNFQ--NEEEKKKAEKKFIDIAAAKEVLSDPEMRKKFDDGEDPLDAESQQGGGGNP
. ::: . . : .:. :::: ... : .::::. . ..:.:.: :: :... : .:
NP_003 MHHPDRHSGASAEVQKEEEKKFKEVGEAFTILSDPKKKTRYDSGQD-LDEEGMNMGDFDP
410 420 430 440 450 460
480 490 500
pF1KB3 ---FHRSWNSWQGFNPFSSGGPFRFKFHFN
:. ... ::. : ..:: : :.:
NP_003 NNIFKAFFGGPGGFS-FEASGPGNFFFQFG
470 480 490
>>XP_011523469 (OMIM: 601964) PREDICTED: dnaJ homolog su (438 aa)
initn: 323 init1: 187 opt: 609 Z-score: 519.8 bits: 105.5 E(85289): 3.3e-22
Smith-Waterman score: 609; 28.8% identity (64.1% similar) in 448 aa overlap (68-503:3-437)
40 50 60 70 80 90
pF1KB3 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV
: : : ::.... .:. . :: : .
XP_011 MCPKNASYYGNRAATLMMLGRFREALGDAQQS
10 20 30
100 110 120 130 140 150
pF1KB3 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRL
..: .:. ..:..:. :. :. : .:...:. .... .::... ... ...
XP_011 VRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALEL---DHKNAQAQQEFKNANAVMEY
40 50 60 70 80
160 170 180 190 200 210
pF1KB3 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL
.. : . : . :. .. .:. :: ... :.:::. :. .: : . ..
XP_011 EKIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRM
90 100 110 120 130 140
220 230 240 250 260 270
pF1KB3 KNDNTEAFY-KISTLYYQLGDH-ELSLSEVRECLKLDQDHKR-CFAHYKQVKKLNKLIES
. :..:.: . :::. : : ... . :.. ::.. :.: ...: :. :.
XP_011 DSTNADALYVRGLCLYYE--DCIEKAVQFFVQALRMAPDHEKACIAC-RNAKALKAKKED
150 160 170 180 190 200
280 290 300 310 320 330
pF1KB3 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERI-CH---CFSKDEKPVEAIRVCS
... ...: : : : .. .:. ..... .. :. :: .: .::. :.
XP_011 GNKAFKEGNYKLAYELYTEALGIDPN----NIKTNAKLYCNRGTVNSKLRKLDDAIEDCT
210 220 230 240 250 260
340 350 360 370 380 390
pF1KB3 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS
...... ..: ::. :. :.:.::..::: . . .:. .. .. :..:: ::.:
XP_011 NAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQ-TEKTKEHKQLLKNAQLELKKS
270 280 290 300 310 320
400 410 420 430 440
pF1KB3 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ--NEEEKKKAEKKFIDIAAAKEV
...:::::::: .::...:: ::::: ::. ::: . . : .:. :::: ... : .
XP_011 KRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTI
330 340 350 360 370 380
450 460 470 480 490 500
pF1KB3 LSDPEMRKKFDDGEDPLDAESQQGGGGNP---FHRSWNSWQGFNPFSSGGPFRFKFHFN
::::. . ..:.:.: :: :... : .: :. ... ::. : ..:: : :.:
XP_011 LSDPKKKTRYDSGQD-LDEEGMNMGDFDPNNIFKAFFGGPGGFS-FEASGPGNFFFQFG
390 400 410 420 430
>>XP_011523471 (OMIM: 601964) PREDICTED: dnaJ homolog su (438 aa)
initn: 323 init1: 187 opt: 609 Z-score: 519.8 bits: 105.5 E(85289): 3.3e-22
Smith-Waterman score: 609; 28.8% identity (64.1% similar) in 448 aa overlap (68-503:3-437)
40 50 60 70 80 90
pF1KB3 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV
: : : ::.... .:. . :: : .
XP_011 MCPKNASYYGNRAATLMMLGRFREALGDAQQS
10 20 30
100 110 120 130 140 150
pF1KB3 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRL
..: .:. ..:..:. :. :. : .:...:. .... .::... ... ...
XP_011 VRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALEL---DHKNAQAQQEFKNANAVMEY
40 50 60 70 80
160 170 180 190 200 210
pF1KB3 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL
.. : . : . :. .. .:. :: ... :.:::. :. .: : . ..
XP_011 EKIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRM
90 100 110 120 130 140
220 230 240 250 260 270
pF1KB3 KNDNTEAFY-KISTLYYQLGDH-ELSLSEVRECLKLDQDHKR-CFAHYKQVKKLNKLIES
. :..:.: . :::. : : ... . :.. ::.. :.: ...: :. :.
XP_011 DSTNADALYVRGLCLYYE--DCIEKAVQFFVQALRMAPDHEKACIAC-RNAKALKAKKED
150 160 170 180 190 200
280 290 300 310 320 330
pF1KB3 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERI-CH---CFSKDEKPVEAIRVCS
... ...: : : : .. .:. ..... .. :. :: .: .::. :.
XP_011 GNKAFKEGNYKLAYELYTEALGIDPN----NIKTNAKLYCNRGTVNSKLRKLDDAIEDCT
210 220 230 240 250 260
340 350 360 370 380 390
pF1KB3 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS
...... ..: ::. :. :.:.::..::: . . .:. .. .. :..:: ::.:
XP_011 NAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQ-TEKTKEHKQLLKNAQLELKKS
270 280 290 300 310 320
400 410 420 430 440
pF1KB3 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ--NEEEKKKAEKKFIDIAAAKEV
...:::::::: .::...:: ::::: ::. ::: . . : .:. :::: ... : .
XP_011 KRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTI
330 340 350 360 370 380
450 460 470 480 490 500
pF1KB3 LSDPEMRKKFDDGEDPLDAESQQGGGGNP---FHRSWNSWQGFNPFSSGGPFRFKFHFN
::::. . ..:.:.: :: :... : .: :. ... ::. : ..:: : :.:
XP_011 LSDPKKKTRYDSGQD-LDEEGMNMGDFDPNNIFKAFFGGPGGFS-FEASGPGNFFFQFG
390 400 410 420 430
>>XP_011523470 (OMIM: 601964) PREDICTED: dnaJ homolog su (438 aa)
initn: 323 init1: 187 opt: 609 Z-score: 519.8 bits: 105.5 E(85289): 3.3e-22
Smith-Waterman score: 609; 28.8% identity (64.1% similar) in 448 aa overlap (68-503:3-437)
40 50 60 70 80 90
pF1KB3 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV
: : : ::.... .:. . :: : .
XP_011 MCPKNASYYGNRAATLMMLGRFREALGDAQQS
10 20 30
100 110 120 130 140 150
pF1KB3 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRL
..: .:. ..:..:. :. :. : .:...:. .... .::... ... ...
XP_011 VRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALEL---DHKNAQAQQEFKNANAVMEY
40 50 60 70 80
160 170 180 190 200 210
pF1KB3 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL
.. : . : . :. .. .:. :: ... :.:::. :. .: : . ..
XP_011 EKIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRM
90 100 110 120 130 140
220 230 240 250 260 270
pF1KB3 KNDNTEAFY-KISTLYYQLGDH-ELSLSEVRECLKLDQDHKR-CFAHYKQVKKLNKLIES
. :..:.: . :::. : : ... . :.. ::.. :.: ...: :. :.
XP_011 DSTNADALYVRGLCLYYE--DCIEKAVQFFVQALRMAPDHEKACIAC-RNAKALKAKKED
150 160 170 180 190 200
280 290 300 310 320 330
pF1KB3 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERI-CH---CFSKDEKPVEAIRVCS
... ...: : : : .. .:. ..... .. :. :: .: .::. :.
XP_011 GNKAFKEGNYKLAYELYTEALGIDPN----NIKTNAKLYCNRGTVNSKLRKLDDAIEDCT
210 220 230 240 250 260
340 350 360 370 380 390
pF1KB3 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS
...... ..: ::. :. :.:.::..::: . . .:. .. .. :..:: ::.:
XP_011 NAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQ-TEKTKEHKQLLKNAQLELKKS
270 280 290 300 310 320
400 410 420 430 440
pF1KB3 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ--NEEEKKKAEKKFIDIAAAKEV
...:::::::: .::...:: ::::: ::. ::: . . : .:. :::: ... : .
XP_011 KRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTI
330 340 350 360 370 380
450 460 470 480 490 500
pF1KB3 LSDPEMRKKFDDGEDPLDAESQQGGGGNP---FHRSWNSWQGFNPFSSGGPFRFKFHFN
::::. . ..:.:.: :: :... : .: :. ... ::. : ..:: : :.:
XP_011 LSDPKKKTRYDSGQD-LDEEGMNMGDFDPNNIFKAFFGGPGGFS-FEASGPGNFFFQFG
390 400 410 420 430
>>NP_001138238 (OMIM: 601964) dnaJ homolog subfamily C m (438 aa)
initn: 323 init1: 187 opt: 609 Z-score: 519.8 bits: 105.5 E(85289): 3.3e-22
Smith-Waterman score: 609; 28.8% identity (64.1% similar) in 448 aa overlap (68-503:3-437)
40 50 60 70 80 90
pF1KB3 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKV
: : : ::.... .:. . :: : .
NP_001 MCPKNASYYGNRAATLMMLGRFREALGDAQQS
10 20 30
100 110 120 130 140 150
pF1KB3 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRL
..: .:. ..:..:. :. :. : .:...:. .... .::... ... ...
NP_001 VRLDDSFVRGHLREGKCHLSLGNAMAACRSFQRALEL---DHKNAQAQQEFKNANAVMEY
40 50 60 70 80
160 170 180 190 200 210
pF1KB3 RSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKL
.. : . : . :. .. .:. :: ... :.:::. :. .: : . ..
NP_001 EKIAETDFEKRDFRKVVFCMDRALEFAPACHRFKILKAECLAMLGRYPEAQSVASDILRM
90 100 110 120 130 140
220 230 240 250 260 270
pF1KB3 KNDNTEAFY-KISTLYYQLGDH-ELSLSEVRECLKLDQDHKR-CFAHYKQVKKLNKLIES
. :..:.: . :::. : : ... . :.. ::.. :.: ...: :. :.
NP_001 DSTNADALYVRGLCLYYE--DCIEKAVQFFVQALRMAPDHEKACIAC-RNAKALKAKKED
150 160 170 180 190 200
280 290 300 310 320 330
pF1KB3 AEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERI-CH---CFSKDEKPVEAIRVCS
... ...: : : : .. .:. ..... .. :. :: .: .::. :.
NP_001 GNKAFKEGNYKLAYELYTEALGIDPN----NIKTNAKLYCNRGTVNSKLRKLDDAIEDCT
210 220 230 240 250 260
340 350 360 370 380 390
pF1KB3 EVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS
...... ..: ::. :. :.:.::..::: . . .:. .. .. :..:: ::.:
NP_001 NAVKLDDTYIKAYLRRAQCYMDTEQYEEAVRDYEKVYQ-TEKTKEHKQLLKNAQLELKKS
270 280 290 300 310 320
400 410 420 430 440
pF1KB3 QKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQ--NEEEKKKAEKKFIDIAAAKEV
...:::::::: .::...:: ::::: ::. ::: . . : .:. :::: ... : .
NP_001 KRKDYYKILGVDKNASEDEIKKAYRKRALMHHPDRHSGASAEVQKEEEKKFKEVGEAFTI
330 340 350 360 370 380
450 460 470 480 490 500
pF1KB3 LSDPEMRKKFDDGEDPLDAESQQGGGGNP---FHRSWNSWQGFNPFSSGGPFRFKFHFN
::::. . ..:.:.: :: :... : .: :. ... ::. : ..:: : :.:
NP_001 LSDPKKKTRYDSGQD-LDEEGMNMGDFDPNNIFKAFFGGPGGFS-FEASGPGNFFFQFG
390 400 410 420 430
504 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Nov 3 13:55:26 2016 done: Thu Nov 3 13:55:28 2016
Total Scan time: 7.930 Total Display time: 0.070
Function used was FASTA [36.3.4 Apr, 2011]